HK1164320B - Synthesis of bortezomib - Google Patents

Description

BACKGROUND OF THE INVENTION Field of the Invention

This invention relates to the synthesis of boronic ester and acid compounds. More particularly, the invention relates to large-scale synthetic processes for the preparation of boronic ester and acid compounds by Lewis acid promoted rearrangement of boron "ate" complexes.

Background of the Invention

Boronic acid and ester compounds display a variety of pharmaceutically useful biological activities. Shenvi et al., U.S. Pat. No. 4,499,082 (1985 ), discloses that peptide boronic acids are inhibitors of certain proteolytic enzymes. Kettner and Shenvi, U.S. Pat. No. 5,187,157 (1993 ), U.S. Pat. No. 5,242,904 (1993 ), and U.S. Pat. No. 5,250,720 (1993 ), describe a class of peptide boronic acids that inhibit trypsin-like proteases. Kleeman et al., U.S. Pat. No. 5,169,841 (1992 ), discloses N-terminally modified peptide boronic acids that inhibit the action of renin. Kinder et al., U.S. Pat. No. 5,106,948 (1992 ), discloses that certain tripeptide boronic acid compounds inhibit the growth of cancer cells.

More recently, boronic acid and ester compounds have displayed particular promise as inhibitors of the proteasome, a multicatalytic protease responsible for the majority of intracellular protein turnover. Ciechanover, Cell, 79: 13-21 (1994), discloses that the proteasome is the proteolytic component of the ubiquitin-proteasome pathway, in which proteins are targeted for degradation by conjugation to multiple molecules of ubiquitin. Ciechanover also discloses that the ubiquitin-proteasome pathway plays a key role in a variety of important physiological processes.

Adams et al., U.S. Patent No. 5,780,454 (1998 ), U.S. Patent No. 6,066,730 (2000 ), U.S. Patent No. 6,083,903 (2000 ), U.S. Patent No. 6,297,217 (2001 ), U.S. Patent No. 6,548,668 , and U.S. Patent No. 6,617,317 (2003 ), hereby incorporated by reference in their entirety, describe peptide boronic ester and acid compounds useful as proteasome inhibitors. The references also describe the use of boronic ester and acid compounds to reduce the rate of muscle protein degradation, to reduce the activity of NF-κB in a cell, to reduce the rate of degradation of p53 protein in a cell, to inhibit cyclin degradation in a cell, to inhibit the growth of a cancer cell, to inhibit antigen presentation in a cell, to inhibit NF-κB dependent cell adhesion, and to inhibit HIV replication.

Albanell and Adams, Drugs of the Future 27:1079-1092 (2002), discloses that one such peptide boronic acid proteasome inhibitor, bortezomib (N-2-pyrazinecarbonyl-L-phenylalanine-L-leucineboronic acid), shows significant antitumor activity in human tumor xenograft models and is undergoing clinical evaluation. Richardson et al., New Engl. J. Med., 348:2609 (2003), reports the results of a Phase 2 study of bortezomib, showing its effectiveness in treating relapsed and refractory multiple myeloma. Dou and Goldfarb, IDrugs 5:828-834 (2002) describes a synthesis of bortezomib.

Studies of boronic acid protease inhibitors have been greatly advanced by the development of chemistry for the preparation of functionalized boronic acid compounds, particularly alpha-halo- and alpha-aminoboronic acids. Matteson and Majumdar, J. Am. Chem. Soc., 102:7590 (1980), discloses a method for preparing alpha-chloroboronic esters by homologation of boronic esters, and Matteson and Ray, J. Am. Chem. Soc., 102:7591 (1980), reports that chiral control of the homologation reaction can be achieved by the use of pinanediol boronic esters. The preparation of alpha-aminoboronic add and ester compounds from the corresponding alpha-chloroboronic esters has also been reported (Matteson et al., J. Am. Chem. Soc., 103:5241 (1981); Shenvi, U.S. Patent No. 4,537,773 (1985 )).

Matteson and Sadhu, U.S. Patent No. 4,525,309 (1985 ), describes an improved procedure for the homologation of boronic esters by rearrangement of the intermediate boron "ate" complex in the presence of a Lewis acid catalyst. The Lewis acid is reported to promote the rearrangement reaction and to minimize epimerization at the alpha-carbon atom. Rigorous exclusion of water and careful control of Lewis acid stoichiometry are required for optimum results, however. These features render the reaction difficult to perform successfully on a production scale, and limit the availability of pharmaceutically important boronic ester and acid compounds, such as bortezomib. Thus, there remains a need in the art for improved methods for the large-scale production of boronic ester and acid compounds.

DESCRIPTION OF THE INVENTION

The invention is as defined in the appended claims.

The present invention provides improved synthetic processes for the large-scale production of boronic ester and add compounds. These processes offer increased yield and purity, increased throughput, and greater ease of handling as compared to prior art methods. Notably, the processes described herein are suitable for batch production on a large, multi-kilogram scale that is limited only by the size of the available manufacturing capabilities. The processes of the invention are particularly advantageous for the synthesis of chiral boronic ester and acid compounds, including alpha-aminoboronic ester and acid compounds. Regardless of scale, the desired products are produced with very high chemical and stereochemical purity.

The patent and scientific literature referred to herein establishes knowledge that is available to those with skill in the art. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention relates. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods and materials are described herein. The issued patents, applications, and references that are cited herein are hereby incorporated by reference to the same extent as if each was specifically and individually indicated to be incorporated by reference. In the case of inconsistencies, the present disclosure, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and are not intended to be limiting.

The term "about" is used herein to mean approximately, in the region of, roughly, or around. When the term "about" is used in conjunction with a numerical range, it modifies that range by extending the boundaries above and below the numerical values set forth. In general, the term "about" is used herein to modify a numerical value above and below the stated value by a variance of 10%.

The term "comprises" is used herein to mean "includes, but is not limited to."

The term "aliphatic", as used herein, means a straight-chain, branched or cyclic C_1-12 hydrocarbon which is completely saturated or which contains one or more units of unsaturation, but which is not aromatic. For example, suitable aliphatic groups include substituted or unsubstituted linear, branched or cyclic alkyl, alkenyl, alkynyl groups and hybrids thereof, such as (cylcoalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl. In various embodiments, the aliphatic group has 1-12,1-8,1-6, or 1-4 carbons.

The terms "alkyl", "alkenyl", and "alkynyl", used alone or as part of a larger moiety, refer to a straight and branched chain aliphatic group having from 1 to 12 carbon atoms, which is optionally substituted with one, two or three substituents. For purposes of the present invention, the term "alkyl" will be used when the carbon atom attaching the aliphatic group to the rest of the molecule is a saturated carbon atom. However, an alkyl group may include unsaturation at other carbon atoms. Thus, alkyl groups include, without limitation, methyl, ethyl, propyl, allyl, propargyl, butyl, pentyl, and hexyl.

For purposes of the present invention, the term "alkenyl" will be used when the carbon atom attaching the aliphatic group to the rest of the molecule forms part of a carbon-carbon double bond. Alkenyl groups include, without limitation, vinyl, 1-propenyl, 1-butenyl, 1-pentenyl, and 1-hexenyl. For purposes of the present invention, the term "alkynyl" will be used when the carbon atom attaching the aliphatic group to the rest of the molecule forms part of a carbon-carbon triple bond. Alkynyl groups include, without limitation, ethynyl, 1-propynyl, 1-butynyl, 1-pentynyl, and 1-hexynyl.

The terms "cycloalkyl", "carbocycle", "carbocyclyl", "carbocyclo", or "carbocyclic", used alone or as part of a larger moiety, means a saturated or partially unsaturated cyclic aliphatic ring system having from 3 to about 14 members, wherein the aliphatic ring system is optionally substituted. Cycloalkyl groups include, without limitation, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, cycloheptenyl, cyclooctyl, cyclooctenyl, and cyclooctadienyl. In some embodiments, the cycloalkyl has 3-6 carbons. The terms "cycloalkyl", "carbocycle", "carbocyclyl", "carbocyclo", or "carbocyclic" also include aliphatic rings that are fused to one or more aromatic or nonaromatic rings, such as decahydronaphthyl or tetrahydronaphthyl, where the radical or point of attachment is on the aliphatic ring.

The terms "haloalkyl", "haloalkenyl" and "haloalkoxy" refer to an alkyl, alkenyl or alkoxy group, as the case may be, substituted with one or more halogen atoms. As used herein, the term "halogen" or "halo" means F, C, Br, or I. Unless otherwise indicated, the terms "alkyl", "alkenyl", and "alkoxy" include haloalkyl, haloalkenyl and haloalkoxy groups, including, in particular, those with 1-5 fluorine atoms.

The terms "aryl" and "ar-", used alone or as part of a larger moiety, e.g., "aralkyl", "aralkoxy", or "aryloxyalkyl", refer to a C_6-14 aromatic moiety comprising one to three aromatic rings, which are optionally substituted. Preferably, the aryl group is a C_6-10 aryl group. Aryl groups include, without limitation, phenyl, naphthyl, and anthracenyl. The term "aryl", as used herein, also includes groups in which an aromatic ring is fused to one or more non-aromatic rings, such as indanyl, phenanthridinyl, or tetrahydronaphthyl, where the radical or point of attachment is on the aromatic ring. The term "aryl" may be used interchangeably with the term "aryl ring".

An "aralkyl" or "arylalkyl" group comprises an aryl group covalently attached to an alkyl group, either of which independently is optionally substituted. Preferably, the aralkyl group is C_6-10 aryl(C_1-6)alkyl, including, without limitation, benzyl, phenethyl, and naphthylmethyl.

The terms "heteroaryl" and "heteroar-", used alone or as part of a larger moiety, e.g., heteroaralkyl, or "heteroaralkoxy", refer to groups having 5 to 14 ring atoms, preferably 5, 6, 9, or 10 ring atoms; having 6, 10, or 14 π electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to four heteroatoms selected from the group consisting of N, O, and S. Heteroaryl groups include, without limitation, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, indolyl, isoindolyl, benzothienyl, benzofuranyl, dibenzofuranyl, indazolyl, benzimidazolyl, benzthiazolyl, purinyl, quinolyl, isoquinolyl, cinnolinyl, phthalazinyl, quinoxalinyl, naphthyridinyl, pteridinyl, carbazolyl, acridinyl, and phenazinyl. The terms "heteroaryl" and "heteroar-", as used herein, also include groups in which a heteroaromatic ring is fused to one or more nonaromatic rings, where the radical or point of attachment is on the heteroaromatic ring. Nonlimiting examples include tetrahydroquinolinyl, tetrahydroisoquinolinyl, and pyrido[3,4-d]pyrimidinyl. The term "heteroaryl" may be used interchangeably with the term "heteroaryl ring" or the term "heteroaromatic", any of which terms include rings that are optionally substituted. The term "heteroaralkyl" refers to an alkyl group substituted by a heteroaryl, wherein the alkyl and heteroaryl portions independently are optionally substituted.

As used herein, the terms "heterocycle", "heterocyclyl", or "heterocyclic radical" refer to a stable 5- to 7-membered monocyclic or 7- to 10-membered bicyclic heterocyclic moiety that is either saturated or partially unsaturated, and having, in addition to carbon atoms, one or more, preferably one to four, heteroatoms selected from the group consisting of N, O, and S, wherein the nitrogen and sulfur heteroatoms are optionally oxidized and the nitrogen atoms are optionally quaternized. The heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure, and any of the ring atoms can be optionally substituted. Examples of such saturated or partially unsaturated heterocyclic radicals include, without limitation, tetrahydrofuranyl, tetrahydrothienyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, pyrrolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, and morpholinyl. The terms "heterocycle", "heterocyclyl", and "heterocyclic radical", as used herein, also include groups in which a non-aromatic heteroatom-containing ring is fused to one or more aromatic or non-aromatic rings, such as indolinyl, chromanyl, phenanthridinyl, or tetrahydroquinolinyl, where the radical or point of attachment is on the non-aromatic heteroatom-containing ring. The term "heterocyclylalkyl" refers to an alkyl group substituted by a heterocyclyl, wherein the alkyl and heterocyclyl portions independently are optionally substituted.

As used herein, the term "partially unsaturated" refers to a ring moiety that includes at least one double or triple bond between ring atoms. The term "partially unsaturated" is intended to encompass rings having one or multiple sites of unsaturation, but is not intended to include aryl or heteroaryl moieties, as herein defined.

The term "substituted", as used herein, means that one or more hydrogen atoms of the designated moiety are replaced, provided that the substitution results in a stable or chemically feasible compound. A stable compound or chemically feasible compound is one in which the chemical structure is not substantially altered when kept at a temperature of 40 °C or less, in the absence of moisture or other chemically reactive conditions, for at least a week, or a compound which maintains its integrity long enough to be useful for the synthetic processes of the invention. The phrase "one or more substituents", as used herein, refers to a number of substituents that equals from one to the maximum number of substituents possible based on the number of available bonding sites, provided that the above conditions of stability and chemical feasibility are met.

An aryl (including the aryl moiety in aralkyl, aralkoxy, aryloxyalkyl and the like) or heteroaryl (including the heteroaryl moiety in heteroaralkyl and heteroarylalkoxy and the like) group may contain one or more substituents. Examples of suitable substituents on the unsaturated carbon atom of an aryl or heteroaryl group include -halo, -NO₂, -CN, -R*, -OR*, -SR°, -N(R⁺)₂, -NR⁺C(O)R*, -NR⁺C(O)N(R⁺)₂ -NR⁺CO₂R°, -O-CO₂R*, -O-C(O)R*, -CO₂R*, -C(O)R*, -C(O)N(R⁺)₂, -OC(O)N(R⁺)₂, -S(O)₂R°, -SO₂N(R⁺)₂, -S(O)R°, and -NR⁺SO₂N(R⁺)₂. Each R⁺ independently is selected from the group consisting of R*, -C(O)R*, -CO₂R*, and -SO₂R*, or two R⁺ on the same nitrogen atom, taken together with the nitrogen atom, form a 5-8 membered aromatic or non-aromatic ring having, in addition to the nitrogen, 0-2 ring heteroatoms selected from N, O, and S. Each R* independently is hydrogen or an optionally substituted aliphatic, aryl, heteroaryl, or heterocyclyl group. Each R° independently is an optionally substituted aliphatic or aryl group.

An aliphatic group also may be substituted with one or more substituents. Examples of suitable substituents on the saturated carbon of an aliphatic group or of a non-aromatic heterocyclic ring include, without limitation, those listed above for the unsaturated carbon of an aryl or heteroaryl group.

As used herein, the term "large-scale" refers to a reaction that utilizes at least about five moles of at least one starting material. Preferably, a large-scale process utilizes at least about 10, 20, 50, or 100 moles of at least one starting material.

The terms "stereoisomer", "enantiomer", "diastereomer", "epimer", and "chiral center", are used herein in accordance with the meaning each is given in ordinary usage by those of ordinary skill in the art. Thus, stereoisomers are compounds that have the same atomic connectivity, but differ in the spatial arrangement of the atoms. Enantiomers are stereoisomers that have a mirror image relationship, that is, the stereochemical configuration at all corresponding chiral centers is opposite. Diastereomers are stereoisomers having more than one chiral center, which differ from one another in that the stereochemical configuration of at least one, but not all, of the corresponding chiral centers is opposite. Epimers are diastereomers that differ in stereochemical configuration at only one chiral center.

As used herein, the term "diastereomeric ratio" refers to the ratio between diastereomers which differ in the stereochemical configuration at one chiral center, relative to a second chiral center in the same molecule. By way of example, a chemical structure with two chiral centers provides four possible stereoisomers: R*R, R*S, S*R, and S*S, wherein the asterisk denotes the corresponding chiral center in each stereoisomer. The diastereomeric ratio for such a mixture of stereoisomers is the ratio of one diastereomer and its enantiomer to the other diastereomer and its enantiomer = (R*R + S*S) : (R*S + S*R).

One of ordinary skill in the art will recognize that additional stereoisomers are possible when the molecule has more than two chiral centers. For purposes of the present invention, the term "diastereomeric ratio" has identical meaning in reference to compounds with multiple chiral centers as it does in reference to compounds having two chiral centers. Thus, the term "diastereomeric ratio" refers to the ratio of all compounds having R*R or S*S configuration at the specified chiral centers to all compounds having R*S or S*R configuration at the specified chiral centers. For convenience, this ratio is referred to herein as the diastereomeric ratio at the asterisked carbon, relative to the second specified chiral center.

The diastereomeric ratio can be measured by any analytical method suitable for distinguishing between diastereomeric compounds having different relative stereochemical configurations at the specified chiral centers. Such methods include, without limitation, nuclear magnetic resonance (NMR), gas chromatography (GC), and high performance liquid chromatography (HPLC) methods.

For purposes of the invention, the term "enantiomeric purity" is used to mean "enantiomeric excess", which is the amount by which the major enantiomer is in excess of the minor enantiomer, expressed as a percentage of the total.

As used herein, the term "epimeric ratio" refers to the ratio of product having one absolute stereochemical configuration at a given chiral center to product having the opposite absolute stereochemical configuration at the corresponding chiral center.

The invention relates to a large-scale process for forming a compound of formula ( XIV ) or a boronic acid anhydride thereof, comprising the steps:

• (aa) coupling a compound of formula (XVIII): or an add addition salt thereof, with a compound of formula (XIX): wherein: P1 is a cleavable amino group protecting moiety; andX is OH or a leaving group; to form a compound of formula (XX): wherein P1 is as defined above, said coupling step (aa) comprising the steps: (i) coupling the compound of formula (XVIII) with a compound of formula (XIX) wherein X is OH in the presence of 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU) and a tertiary amine in dichloromethane;(ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and(iii) performing an aqueous wash of the ethyl acetate solution;
• (bb) removing the protecting group P1 to form a compound of formula (XXI): or an acid addition salt thereof, said protecting group removing step (bb) comprising the steps: (i) treating the compound of formula (XX) with HCl in ethyl acetate;(ii) adding heptane to the reaction mixture; and(iii) isolating by crystallization the compound of formula (XXI) as its HCl addition salt;
• (cc) coupling the compound of formula (XXI) with a reagent of formula (XXII) wherein X is a OH or a leaving group, to form a compound of formula (XXIII): said coupling step (cc) comprising the steps: (i) coupling the compound of formula (XXI) with 2-pyrazinecarboxylic acid in the presence of TBTU and a tertiary amine in dichloromethane;(ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and(iii) performing an aqueous wash of the ethyl acetate solution; and
• (dd) deprotecting the boronic acid moiety to form the compound of formula (XIV) or a boronic acid anhydride thereof, said deprotecting step (dd) comprising the steps: (i) providing a biphasic mixture comprising the compound of formula (XXIII), an organic boronic acid acceptor, a lower alkanol, a C5-8 hydrocarbon solvent, and aqueous mineral acid;(ii) stirring the biphasic mixture to afford the compound of formula (XIV);(iii) separating the solvent layers; and(iv) extracting the compound of formula (XIV), or a boronic acid anhydride thereof, into an organic solvent

Preferably, step (dd)(iii) comprises the steps:

1. (1) separating the solvent layers;
2. (2) adjusting the aqueous layer to basic pH;
3. (3) washing the aqueous layer with an organic solvent; and
4. (4) adjusting the aqueous layer to a pH less than about 6;

The efficiency of the process described above is further enhanced by telescoping steps, for example, by carrying a reaction mixture or worked-up product solution from one reaction directly into the following reaction, without isolation of the intermediate product. For example, in some embodiments, step (aa)(iii) affords an ethyl acetate solution comprising a compound of formula ( XX ), and the ethyl acetate solution is directly subjected in step (bb) to conditions effective to remove the protecting group P¹. In some such embodiments, the protecting group P¹ is an acid-labile protecting group, for example, tert-butoxycarbonyl (Boc), and the ethyl acetate solution from step (aa)(iii) is treated with acid. In certain preferred embodiments, the ethyl acetate solution from step (aa)(iii) is dried azeotropically and then treated with gaseous HCl.

When the deprotecting step (bb) is performed under anhydrous conditions, as described above, the product of formula ( XXI ) can be isolated by crystallization from the reaction mixture as its HCl addition salt. Crystallization of the product salt is promoted by addition of a hydrocarbon solvent such as n-heptane. In some embodiments, the reaction mixture is partially concentrated prior to addition of the hydrocarbon solvent. The present inventors have discovered that crystallization of the compound of formula ( XXI ) in this manner efficiently removes any tripeptide impurity that may have formed during the coupling step (e) or (aa). Such impurities are difficult to remove at later stages in the synthesis.

Further telescoping of the process is possible by carrying the product mixture from the coupling step (cc) directly into the boronic acid moiety deprotecting step (dd). Preferably, the organic solvent from the coupling reaction is first replaced with ethyl acetate in order to facilitate aqueous washes. A second solvent exchange into a hydrocarbon solvent then permits the product solution from step (cc) to be used directly in the biphasic boronic acid deprotecting step (dd), without isolation of the compound of formula ( XXIII ).

In step (dd)(iv) of the process described above, the compound of formula ( XIV ), or a boronic acid anhydride thereof, preferably is extracted into ethyl acetate and crystallized by addition of hexane or heptane. In some embodiments, the process further comprises isolation of a boronic acid anhydride of the compound of formula ( XIV ), preferably a trimeric boronic acid anhydride of formula ( XXIV ):

The process of the invention permits the large-scale manufacture of bortezomib of very high chemical and stereochemical purity. Prior art processes were limited in scale and afforded product of lower overall purity.

An alternative process, provided for reference purposes, relates to a large-scale process for preparing an alpha-aminoboronic ester compound of formula ( VIIa ) or ( VIIb ): or an acid addition salt thereof, wherein:

• R1 is an optionally substituted aliphatic, aromatic, or heteroaromatic group; and
• R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted chiral cyclic boronic ester;

said process comprising:

1. (a) providing a boron "ate" complex of formula ( IIa ) or (IIb): where
   • Y is a nucleofugic group;
   • M⁺ is a cation;
   • R² is hydrogen;
   • R³ is a nucleofugic group; and
   • R⁴ and R⁵ are as defined above;
2. (b) contacting the boron "ate" complex of formula ( IIa ) or ( IIb ) with a Lewis acid under conditions that afford a boronic ester compound of formula ( Ia ) or ( Ib ): where each of R¹ to R⁵ is as defined above, said contacting step being conducted in a reaction mixture comprising:
   1. (i) a coordinating ether solvent that has low miscibility with water; or
   2. (ii) an ether solvent that has low miscibility with water and a coordinating co-solvent; and
3. (c) treating the boronic ester compound of formula ( Ia ) or ( Ib ) with a reagent of formula M¹-N(G)₂, where M¹ is an alkali metal and G is an amino group protecting moiety, to form a compound of formula ( VIIIa ) or ( VIIIb ): wherein each G and R¹ to R⁵ are as defined above; and
4. (d) removing the G groups to form a compound of formula ( VIIa ) or ( VIIb ):

or an acid addition salt thereof.

Preferred values for Y, M⁺, R¹ to R⁵, and G are as described above. The compound of formula ( VIIa ) or ( VIIb ) preferably has a diastereomeric ratio at the alpha-carbon of at least about 96:4, more preferably at least about 97:3, relative to a chiral center in the R⁴-R⁵ chiral moiety.

The alpha-aminoboronic ester compounds of formula ( VII ) are useful synthetic intermediates for the preparation of peptidyl boronic ester compounds. In some embodiments, therefore, the alternative process provided for reference purposes further comprises coupling the compound of formula ( VII ) with a compound of formula ( IX ): wherein:

• P1 is an amino group blocking moiety;
• R7 is selected from the group consisting of hydrogen, C1-10aliphatic, optionally substituted C6-10aryl, or C1-6aliphatic-R8; and
• R8 is selected from the group consisting of alkoxy, alkylthio, optionally substituted aryl, heteroaryl, and heterocyclyl groups, and optionally protected amino, hydroxy, and guanidino groups; and
• X is OH or a leaving group;

to form a compound of formula (X): wherein each of P¹, R¹, R⁴, R⁵, and R⁷ is as defined above.

The leaving group X is any group capable of nucleophilic displacement by the alpha-amino group of the compound of formula ( VII ). In some embodiments, the moiety - C(O)-X is an activated ester, such as an O-(N-hydroxysuccininimide) ester. In some embodiments, an activated ester is generated in situ by contacting a compound of formula ( IX ), wherein X is OH, with a peptide coupling reagent. Examples of suitable peptide coupling reagents include, without limitation, carbodiimide reagents, e.g., dicyclohexylcarbodiimide (DCC) or 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide (EDC); phosphonium reagents, e.g., benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate (BOP reagent); and uronium reagents, e.g., O-(1H-benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate (TBTU).

For purposes of the invention, the term "amino-group blocking moiety" refers to any group used to derivatize an amino group, especially an N-terminal amino group of a peptide or amino acid. The term "amino-group blocking moiety" includes, but is not limited to, protecting groups that are commonly employed in organic synthesis, especially peptide synthesis. See, for example, Gross and Mienhoffer, eds., The Peptides, Vol. 3, Academic Press, New York, 1981, pp. 3-88; Green and Wuts, Protective Groups in Organic Synthesis, 3rd edition, John Wiley and Sons, Inc., New York, 1999. Unless otherwise specified, however, it is not necessary for an amino-group blocking moiety to be readily cleavable. Amino-group blocking moieties include, e.g., alkyl, acyl, alkoxycarbonyl, aminocarbonyl, and sulfonyl moieties. In some embodiments, the amino-group blocking moiety is an acyl moiety derived from an amino acid or peptide, or a derivative or analog thereof.

As used herein, the term "amino acid" includes both naturally occurring and unnatural amino acids. For purposes of the invention, a "derivative" of an amino acid or peptide is one in which a functional group, e.g., a hydroxy, amino, carboxy, or guanidino group at the N-terminus or on a side chain, is modified with a blocking group. As used herein, an "analog" of an amino acid or peptide is one which includes a modified backbone or side chain. The term "peptide analog" is intended to include peptides wherein one or more stereocenters are inverted and one or more peptide bonds are replaced with a peptide isostere.

P¹ is a cleavable protecting group. Examples of cleavable protecting groups include, without limitation, acyl protecting groups, e.g., formyl, acetyl (Ac), succinyl (Suc), or methoxysuccinyl (MeOSuc), and urethane protecting groups, e.g., tert-butoxycarbonyl (Boc), benzyloxycarbonyl (Cbz), or fluorenylmethoxycarbonyl (Fmoc).

EXAMPLES Abbreviations

BOC

tert-butoxycarbonyl

D.I.

de-ionized

DMF

N,N-dimethylformamide

GC

gas chromatography

GC-MS

gas chromatography-mass spectrometry

h

hours

HDPE

high density polyethylene

HPLC

high performance liquid chromatography

LDA

lithium diisopropylamide

LOD

loss on drying

min

minutes

MTBE

t-butyl methyl ether

RP-HPLC

reverse phase high performance liquid chromatography

RPM

revolutions per minute

TBTU

O-benzotriazol-1-yl-N,N,N',N'-tetramethyluronium tetrafluoroborate

THF

tetrahydrofuran

Reference Example 1:(1R)-(S)-Pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate Manufacturing Process (1S)-(S)-Pinanediol 1-chloro-3-methylbutane-1-boronate

1. 1. (S)-Pinanediol-2-methylpropane-1-boronate (12.0 kg, 50.8 moles) was charged to a reaction vessel maintained under a nitrogen atmosphere.
2. 2. tert-Butyl methyl ether (53 kg) and dichloromethane (22.5 kg) were charged and the resultant mixture was cooled to -57 °C with stirring.
3. 3. Diisopropylamine, (6.7 kg) was charged to another reaction vessel maintained under a nitrogen atmosphere.
4. 4. tert-Butyl methyl ether (27 kg) was charged to the diisopropylamine and the resultant mixture was cooled to -10 °C with stirring.
5. 5. n-Hexyllithium in hexane (33.2 weight% solution) (17.6 kg) was added to the diisopropylamine mixture over a period of 57 minutes, while the reaction temperature was maintained at -10 °C to -7 °C.
6. 6. This mixture (LDA-mixture) was stirred for 33 minutes at -9 °C to -7 °C before it was used.
7. 7. Zinc chloride, (12.1 kg) was charged to a third reaction vessel maintained under a nitrogen atmosphere.
8. 8. tert-Butyl methyl ether (16 kg) was charged to the zinc chloride and the resultant mixture was warmed to 30 °C with stirring.
9. 9. Tetrahydrofuran (53 kg) was added to the zinc chloride suspension over a period of 18 minutes, while the reaction temperature was maintained at 35 °C to 40 °C.
10. 10. This mixture (ZnCl₂-mixture) was stirred for 4 hours and 28 minutes at 38 °C to 39 °C until it was used.
11. 11. The LDA-mixture (from # 3 - 6) was added over a period of 60 minutes to the reaction vessel containing (S)-pinanediol-2-methylpropane-1-boronate, while the reaction temperature was maintained at -60 °C to -55 °C.
12. 12. A tert-butyl methyl ether rinse (10 kg) was used to complete the addition.
13. 13. The reaction mixture was stirred for an additional 20 minutes at -59 °C to -55 °C.
14. 14. The reaction mixture was warmed to -50 °C over a period of 11 minutes.
15. 15. The ZnCl₂-mixture (from #7-10) was added over a period of 48 minutes to the reaction vessel containing (S)-pinanediol-2-methylpropane-1-boronate and the LDA-mixture, while the reaction temperature was maintained at -50 °C to -45 °C.
16. 16. A tert-butyl methyl ether rinse (10 kg) was used to complete the addition.
17. 17. The reaction mixture was stirred for an additional 30 minutes at -45 °C to -40 °C and then warmed to 10 °C over a period of 81 minutes.
18. 18. A 10% sulfuric acid solution (72 kg) was added over a period of 40 minutes to the reaction vessel, while the reaction temperature was maintained at 10 °C to 21 °C.
19. 19. The reaction mixture was stirred for 16 minutes at ambient temperature, before the aqueous phase was separated.
20. 20. The organic phase was washed successively with deionized (D.I.) water (32 kg), and 10% sodium chloride solution (26.7 kg), each wash involved vigorous stirring for 15 to 17 minutes at ambient temperature.
21. 21. The reaction mixture was concentrated under reduced pressure (p_min = 81 mbar), maintaining an external (jacket/bath) temperature of 50 °C to 55 °C, providing a residue which was dissolved in methylcyclohexane (56 kg).
22. 22. The reaction mixture was refluxed (in a Dean-Stark type condenser for water separation) under reduced pressure (p_min = 67 mbar), maintaining an external (jacket/bath) temperature of 50 °C to 55 °C for 2 hours and 7 minutes, until no more water was separated.
23. 23. About 35 L of the solvents were distilled off under reduced pressure (p_min = 81 mbar), maintaining an external (jacket/bath) temperature of 50 °C to 55 °C.
24. 24. The resultant dry methylcyclohexane mixture containing (1S)-(S)-pinanediol 1-chloro-3-methylbutane-1-boronate was cooled to 14 °C.

(1R)-(S)-Pinanediol 1-bis(trimethylsilyl)amino-3-methylbutane-1-boronate

1. 1. Lithium bis(trimethylsilyl)amide in tetrahydrofuran (19.4 weight% solution), (41.8 kg) was charged to a reaction vessel maintained under a nitrogen atmosphere and cooled to -19 °C with stirring.
2. 2. The methylcyclohexane mixture containing (1S)-(S)-pinanediol 1-chloro-3-methylbutane-1-boronate was added over a period of 55 minutes, while the reaction temperature was maintained at -19 °C to -13 °C.
3. 3. A methylcyclohexane rinse (5 kg) was used to complete the addition.
4. 4. The reaction mixture was stirred for an additional 65 minutes at -13 °C to -12 °C and then warmed to 25 °C over a period of 25 minutes.
5. 5. A suspension of Celite (2.5 kg) in methylcyclohexane (22 kg) was added to the reaction mixture.
6. 6. The reaction mixture was concentrated under reduced pressure (p_min = 25 mbar), maintaining an external (jacket/bath) temperature of 45 °C to 50 °C, providing a residue which was dissolved in methylcyclohexane (36 kg).
7. 7. A sample was then removed for in-process testing for tetrahydrofuran content by GC.
8. 8. The tetrahydrofuran assay was 0.58%.
9. 9. The solids were removed by filtration, the filtrate was filtered through a plug of Silica Gel (2.0 kg).
10. 10. Both filter units were washed with isopropyl ether (30 kg).
11. 11. The resultant methylcyclohexane/isopropyl ether mixture containing (1R)-(S)-pinanediol 1-bis(trimethylsilyl)amino-3-methylbutane-1-boronate was stored in a container at ambient temperature until it was used in the next step.

(1R)-(S)-Pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate

1. 1. Trifluoroacetic acid, (12 kg) was charged to another reaction vessel maintained under a nitrogen atmosphere.
2. 2. Isopropyl ether (78 kg) was charged to the trifluoroacetic acid and the resultant mixture was cooled to -10 °C with stirring.
3. 3. The methylcyclohexane/isopropyl ether mixture containing (1R)-(S)-pinanediol 1-bis(trimethylsilyl)amino-3-methylbutane-1-boronate was added over a period of 53 minutes causing product precipitation, while the reaction temperature was maintained at -10 °C to -5 °C.
4. 4. An isopropyl ether rinse (5 kg) was used to complete the addition.
5. 5. The reaction mixture was stirred for an additional 8 hours and 20 minutes at -9 °C to -7°C.
6. 6. The solid was collected by filtration, washed with isopropyl ether (70 kg) in two portions, and dried under reduced pressure (pmin = 56 mbar) at 41 °C to 42 °C for 2 hours and 15 minutes.
7. 7. The solid was stirred with D.I. water (60 kg) for 24 minutes at ambient temperature, before the D.I. water was removed by filtration.
8. 8. The solid was washed with D.I. water (12 kg).
9. 9. The solid was then dried under vacuum (pmin = 4 mbar) at 40 °C to 44 °C for 9 hours and 22 minutes, after that time the loss on drying was 0.51%, which meets the ≤ 1% requirement.
10. 10. The intermediate, (1R)-(S)-pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate, crude, was then packaged into single polyethylene bags in polypropylene drums and labeled. The yield was 72%.

Recrystallization of (1R)-(S)-pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate, crude

1. 1. (1R)-(S)-Pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate, crude, (13 kg) was charged to a reaction vessel maintained under a nitrogen atmosphere.
2. 2. Trifluoroacetic acid (31 kg) was charged to the reaction vessel and the resultant mixture was cooled to 4 °C with stirring.
3. 3. Once all of the solid was dissolved leaving a slightly turbid mixture, isopropyl ether (29 kg) was added over a period of 57 minutes, while the reaction temperature was maintained at 2 °C to 3 °C.
4. 4. After complete addition the mixture was filtered through a filter into a receiving vessel maintained under a nitrogen atmosphere.
5. 5. Reactor and filter were rinsed with a mixture of trifluoroacetic acid (3.8 kg) and isopropyl ether (5 kg). The rinse was added to the filtrate.
6. 6. Isopropyl ether (126 kg) was added over a period of 15 minutes causing product precipitation, while the reaction temperature was maintained at 16 °C to 18 °C.
7. 7. The mixture was stirred at 16 °C to 18 °C for 15 min, then cooled to -5 °C over a period of 67 minutes, and stirred at -3 °C to -5 °C under a nitrogen atmosphere for 89 minutes.
8. 8. The solid was then isolated by filtration, washed with isopropyl ether (48 kg) in two portions, and dried under vacuum (pmin = 2 mbar) at 34 °C to 40 °C for 2 hours and 55 minutes after that time the loss on drying was 0.32%, which meets the ≤ 0.5% requirement.
9. 9. The product, (1R)-(S)-pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate, was then packaged into double polyethylene bags in fiber drums and labeled. The yield was 86%.

Example 2: N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride Manufacturing Process (1S,2S,3R,5S)-Pinanediol N-BOC-L-phenylalanine-L-leucine boronate

1. 1. In a fume hood, a three-necked glass reaction flask equipped with a Claisen head temperature recorder and a mechanical stirrer was flushed with nitrogen.
2. 2. (1R)-(S)-Pinanediol 1-ammonium trifluoroacetate-3-methylbutane-1-boronate (2.0 kg), was charged to the flask.
3. 3. BOC-L-phenylalanine (1.398 kg) was charged to the flask.
4. 4. 2-(1H-Benzotriazol-1-yl)-1,1,3,3-tetramethyl uronium tetrafluoroborate, TBTU (1.864 kg) was charged to the flask.
5. 5. Dichloromethane (15.8 L) was charged to the flask.
6. 6. The stirring motor was adjusted to provide stirring at 260 RPM.
7. 7. Using an ice/water cooling bath, the reaction mixture was cooled to 1.0 °C, maintaining a nitrogen atmosphere.
8. 8. N,N-Diisopropylethylamine (2.778 L) was charged to a glass flask and transferred to the reaction mixture over a period of 117 minutes using a peristaltic pump maintaining a reaction temperature range of 0.7 °C - 2.1 °C. The overall addition rate was 23.7 mL/ min.
9. 9. A dichloromethane (0.2 L) rinse of the flask into the reaction mixture was used to complete the addition.
10. 10. The reaction mixture was stirred for an additional 35 minutes. The temperature at the start of the stir time was 1.8 °C, and 2.5 °C at the end.
11. 11. A sample was then removed for in-process testing by reverse phase high performance liquid chromatography (RP-HPLC). The percent conversion was determined to be 99.3%.
12. 12. The reaction mixture was transferred in approximately two equal halves to two rotary evaporator flasks. The reaction mixture was concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 29-30 °C.
13. 13. Ethyl acetate (4.0 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks.
14. 14. The mixtures in each flask were again concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 29-30 °C.
15. 15. The residues in each rotary evaporator flask were then transferred back to the reaction flask using ethyl acetate (13.34 L).
16. 16. In a glass flask equipped with a stirrer, a 1% aqueous phosphoric acid solution was prepared by mixing D.I. water (13.18 L) and phosphoric acid (0.160 kg).
17. 17. In a glass flask equipped with a stirrer, a 2% aqueous potassium carbonate solution (12.0 L) was prepared by mixing D.I. water (11.76 L) and potassium carbonate (0.24 kg).
18. 18. In a glass flask equipped with a stirrer, a 10% aqueous sodium chloride solution (13.34 L) was prepared by mixing D.I. water (13.34 L) and sodium chloride (1.334 kg).
19. 19. D.I. water (13.34 L) was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 380 RPM for 7 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred under vacuum to a suitable flask and discarded.
20. 20. Again, D.I. water (13.34 L) was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 385 RPM for 7 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred under vacuum to a suitable flask and discarded.
21. 21. The 1% phosphoric acid solution prepared in Step 16 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 365 RPM for 7 minutes. The layers were allowed to separate and the acidic aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
22. 22. The 2% potassium carbonate solution prepared in Step 17 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 367 RPM for 7 minutes. The layers were allowed to separate and the basic aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
23. 23. The 10% sodium chloride solution prepared in Step 18 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 373 RPM for 6 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
24. 24. The ethyl acetate solution was transferred to a rotary evaporator flask and concentrated under reduced pressure using a rotary evaporator, maintaining a bath temperature of 29-30 °C, to provide a residue.
25. 25. The residue was then redissolved in ethyl acetate (4.68 L).
26. 26. The solution was concentrated under vacuum using a rotary evaporator, maintaining a bath temperature of 29-30 °C, to provide a residue once more.
27. 27. Again, the residue was then redissolved in ethyl acetate (4.68 L) and two samples taken for determination of water content by Karl Fisher titration. The water content of two samples was determined as 0.216 % and 0.207 %.
28. 28. Using a further quantity of ethyl acetate (12.66 L), the mixture was transferred from the rotary evaporator flask to a dry reaction flask equipped with a temperature recorder, a mechanical stirrer, and a fritted gas dispersion tube, and purged with nitrogen.

(1S,2S,3R,5S)-Pinanediol L-phenylalanine-L-leucine boronate, HCl salt

1. 1. The ethyl acetate solution containing (1S,2S,3R,5S)-pinanediol N-BOC-L-phenylalanine-L-leucine boronate was cooled using an ice/water cooling bath to-0.9 °C.
2. 2. Hydrogen chloride (1.115 kg) gas was bubbled into the reaction mixture over a period of 1.48 hours. The temperature at the start of the addition was -0.9 °C, and 6.8 °C at the end.
3. 3. The reaction was then allowed to warm to 14.4 °C over 50 minutes, while maintaining a nitrogen atmosphere.
4. 4. A sample was removed for in-process testing by RP-HPLC. The percent conversion was 68.9 % (area %).
5. 5. The reaction was stirred for 35 minutes. The temperature at the start was 14 °C, and 14.8 °C at the end.
6. 6. A sample was removed for in-process testing by RP-HPLC. The percent conversion was 94.7% (area %).
7. 7. The reaction was stirred for approximately a further 50 minutes, maintaining a temperature of 10 °C ± 5 °C.
8. 8. A sample was removed for in-process testing by RP-HPLC. The percent conversion was 97.3%.
9. 9. The reaction was stirred for approximately a further 50 minutes, maintaining a temperature of 10°C ± 5 °C. The final temperature was 14.6 °C.
10. 10. A sample was removed for in-process testing by RP-HPLC. The total reaction time after addition of hydrogen chloride gas was four (4) hours.
11. 11. The percent conversion was 99%.
12. 12. A slurry was observed.
13. 13. n-Heptane (8.8 L) was charged to the reaction mixture.
14. 14. The slurry was stirred for 2 hours. The temperature at the start of the stir time was 12.7 °C, and 15.3 °C at the end.
15. 15. The solid was isolated by filtration on a Buchner funnel lined with a polypropylene felt filter pad.
16. 16. The solid was washed with n-heptane (4.68 L).
17. 17. In a hood, the solid was transferred to three drying trays at not more than 1" deep and air-dried for 1 hour.
18. 18. The solid was then dried at ≤35 °C under a vacuum of 27" of Hg for 16 hours 28 minutes in a vacuum oven equipped with a vacuum gauge and a temperature recorder.
19. 19. The solid was sampled from each drying tray to determine the % Loss on Drying. The LOD was determined to be 0 %, 0.02 %, and 0.02 % on the three samples taken.
20. 20. (1S,2S,3R,5S)-Pinanediol L-phenylalanine-L-leucine boronate, HCl salt was then packaged into double poly bags in fiber drums and labeled, and sampled.
21. 21. The isolated yield was 1.87 kg, 79.1%. The intermediate was stored at 2-8 °C until used in further manufacturing.

(1S,2S,3R,5S)-Pinanediol N-(2-pyrazinecarbonyl)-L-phenylalanine-L-leucine boronate

1. 1. In a fume hood a three-necked glass reaction flask equipped with a Claisen head, temperature recorder and a mechanical stirrer was flushed with nitrogen.
2. 2. (1S,2S,3R,5S)-Pinanediol L-phenylalanine-L-leucine boronate, HCl salt (1.85 kg) was charged to the flask.
3. 3. 2-Pyrazinecarboxylic acid (0.564 kg) was charged to the flask.
4. 4. 2-(H-Benzotriazol-1-yl)-1,1,3,3-tetramethyl uronium tetrafluoroborate, TBTU (1.460 kg) was charged to the flask.
5. 5. Dichloromethane (18.13 L) was charged to the flask.
6. 6. The stirring motor was adjusted to provide stirring at 272 RPM.
7. 7. Using a cooling bath, the reaction mixture was cooled to -1.2 °C.
8. 8. N,N-Diisopropylethylamine (1.865 kg) was charged to a glass flask and transferred to the reaction over a period of 50 minutes using a peristaltic pump maintaining a reaction temperature range of -1.2 °C to 2.8 °C.
9. 9. A dichloromethane rinse (0.37 L) of the flask into the reaction mixture was used to complete the addition.
10. 10. The reaction mixture was allowed to warm and stirred for an additional 81 minutes.
11. 11. The temperature at the start of the stir time was 15 °C, and 24.9 °C at the end.
12. 12. A sample was then removed for in-process testing by RP-HPLC. The percent conversion was determined to be 99.9%.
13. 13. The reaction mixture was transferred in approximately two equal halves to two rotary evaporator flasks. The reaction mixture was concentrated under reduced pressure using two rotary evaporators, maintaining an external bath temperature of 33-34 °C.
14. 14. Ethyl acetate (12.95 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks.
15. 15. The mixtures in each flask were then concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 33-34 °C.
16. 16. The residues in each rotary evaporator flask were then transferred back to the reaction flask using ethyl acetate (12.95 L).
17. 17. In a glass flask equipped with a stirrer, a 1% aqueous phosphoric acid solution (12.34 L) was prepared by mixing D.I. water (12.19 L) and phosphoric acid (0.148 kg).
18. 18. In a glass flask equipped with a stirrer, a 2% aqueous potassium carbonate solution (12.34 L) was prepared by mixing D.I. water (12.09 L) and potassium carbonate (0.247 kg).
19. 19. In a glass flask equipped with a stirrer, a 10% aqueous sodium chloride solution (12.34 L) was prepared by mixing D.I. water (12.34 L) and sodium chloride (1.234 kg).
20. 20. D.I. water (12.34 L) was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 382 RPM for 7 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
21. 21. Again, D.I. water (12.34 L) was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 398 RPM for 7 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
22. 22. The 1% phosphoric acid solution prepared in Step 17 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 364 RPM for 8 minutes. The layers were allowed to separate and the acidic aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
23. 23. The 2% potassium carbonate solution prepared in Step 18 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 367 RPM for 8 minutes. The layers were allowed to separate and the basic aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
24. 24. The 10% sodium chloride solution prepared in Step 19 was charged to the reaction flask containing the ethyl acetate solution and the mixture stirred at 374 RPM for 8 minutes. The layers were allowed to separate and the aqueous phase (bottom layer) was transferred to a suitable flask and discarded.
25. 25. The ethyl acetate solution was transferred under vacuum in approximately two equal halves to two rotary evaporator flasks and concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 34 °C.
26. 26. n-Heptane (14.8 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks. The mixtures in each flask were then concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 34 °C.

N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride, crude

1. 1. In a glass flask equipped with a stirrer, a 1N solution of hydrochloric acid (22.2 L) was prepared by mixing D.I. water (20.36 L) and hydrochloric acid (1.84 kg).
2. 2. In a glass flask equipped with a stirrer, a 2N sodium hydroxide solution (12.03 L) was prepared by mixing D.I. water (12.03 L) and sodium hydroxide (0.962 kg).
3. 3. The residues containing (1S,2S,3R,5S)-pinanediol N-(2-pyrazinecarbonyl)-L-phenylalanine-L-leucine boronate in each rotary evaporator flask were then transferred to a three-necked glass reaction flask equipped with a temperature recorder and a mechanical stirrer, using n-heptane (14.8 L) and methanol (14.8 L).
4. 4. The stirring motor was adjusted to provide stirring at 284 RPM.
5. 5. 2-Methylpropaneboronic acid (0.672 kg) was charged to the flask.
6. 6. 1N hydrochloric acid prepared in Step 1 (11.2 L) was charged to the flask.
7. 7. The stirring motor was adjusted to provide stirring at 326 RPM.
8. 8. The reaction mixture was stirred for 16.38 hours The start batch temperature was 28.6 °C, and the end batch temperature was 21.6 °C.
9. 9. A sample was then removed for in-process testing by RP-HPLC.
10. 10. The percent conversion was determined to be 100%.
11. 11. Stirring was stopped and the biphasic mixture allowed to separate.
12. 12. The n-heptane layer (upper layer) was transferred to a suitable flask and discarded.
13. 13. n-Heptane (5.37 L) was charged to the reaction flask and the mixture stirred at 381 RPM for 6 minutes. The layers were allowed to separate and the n-heptane phase (upper layer) was transferred to a suitable flask and discarded.
14. 14. Again, n-heptane (5.37 L) was charged to the reaction flask and the mixture stirred at 340 RPM for 6 minutes. The layers were allowed to separate and the n-heptane phase (upper layer) was transferred to a suitable flask and discarded.
15. 15. The aqueous methanol solution was transferred in approximately two equal halves to two rotary evaporator flasks and concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 33-34 °C.15 L of methanol were collected.
16. 16. Dichloromethane (5.37 L) was used to transfer the residue from the rotary evaporator flasks back into the reaction flask.
17. 17. 2N sodium hydroxide (11.2 L) prepared in Step 2 was charged to the flask.
18. 18. The dichloromethane layer (lower layer) was transferred to a suitable flask and discarded.
19. 19. Dichloromethane (5.37 L) was charged to the flask and the mixture stirred at 374 RPM for 6 minutes. The phases were allowed to separate and the dichloromethane layer (lower layer) was transferred to a suitable flask and discarded.
20. 20. Again, dichloromethane, (5.37 L) was charged to the flask and the mixture stirred at 368 RPM for 8 minutes. The phases were allowed to separate and the dichloromethane layer (lower layer) was transferred to a suitable flask and discarded.
21. 21. Dichloromethane (5.37 L) was charged to the flask.
22. 22. 1N hydrochloric acid (10.7 L) was charged to the flask with stirring. The pH of the aqueous phase was determined to be 6.
23. 23. Stirring was discontinued and the phases allowed to separate.
24. 24. The dichloromethane phase (lower layer) was transferred under vacuum to a glass receiving flask.
25. 25. Dichloromethane (5.37 L) was charged to the flask and the mixture stirred at 330 RPM for 6 minutes. The phases were allowed to separate and the dichloromethane layer (lower layer) was transferred to the glass receiving flask.
26. 26. Again, dichloromethane, (5.37 L) was charged to the flask and the mixture stirred at 335 RPM for 6 minutes. The phases were allowed to separate and the dichloromethane layer (lower layer) was transferred to the glass receiving flask.
27. 27. The dichloromethane extracts were combined and transferred in approximately two equal halves to two rotary evaporator flasks and concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 33-34 °C.
28. 28. Ethyl acetate (12.95 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks. The mixtures in each flask were then concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 45-46 °C.
29. 29. Again, ethyl acetate (12.95 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks. The mixtures in each flask were then concentrated under reduced pressure using a rotary evaporator, maintaining an external bath temperature of 45-46 °C, until approximately 10% of the original volume remained.
30. 30. n-Heptane (10.2 L) was divided into two approximately equal portions and charged to the two rotary evaporator flasks, and the slurry stirred under a nitrogen atmosphere for 2.67 hours at 22-23 °C.
31. 31. The solid was isolated by filtration on a Buchner funnel, lined with a polypropylene felt filter pad.
32. 32. The solid was washed with n-heptane (2.96 L).
33. 33. In a hood, the solid was transferred to four drying trays and air-dried for 1.25 hours.
34. 34. The solid was then dried at 36 - 50 °C under a vacuum of 27" of Hg for 18 hours 27 minutes in a vacuum oven equipped with a vacuum gauge and a temperature recorder.
35. 35. The solid was sampled from each tray to determine the % Loss on Drying (LOD). The LOD was determined to be 0.38%, 0.62%, 0.71%, and 0.63% on the four samples taken.
36. 36. N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride, crude was packaged into two 5L, HDPE, tamper-proof wide-mouth bottles and labeled.
37. 37. The isolated yield was 1.314 kg, 83%.

Recrystallization of N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride, crude

1. 1. In a hood a glass reaction flask equipped with a mechanical stirrer, a reflux condenser and a temperature recorder was flushed with nitrogen.
2. 2. Ethyl acetate (21 L) was charged to the flask.
3. 3. The ethyl acetate was heated to 66.8 °C under a nitrogen atmosphere, using a hot water/ steam bath.
4. 4. N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride, crude (1.311 kg) was slowly charged to the reaction flask. Charging occurred over a period of 3 minutes.
5. 5. The mixture was stirred for 1 minute until all the solid had dissolved. The temperature of the solution was 64 °C.
6. 6. The heat source was removed and the mixture was slowly cooled to 60 °C using a cold bath.
7. 7. The hot ethyl acetate solution was transferred into a receiving flask via poly tubing and a polypropylene in-line filter capsule using a peristaltic pump.
8. 8. The mixture was allowed to cool to 27.2 °C, and allowed to stand under a nitrogen atmosphere without stirring, for 17.75 hours. The final temperature was recorded as 20.5 °C.
9. 9. The mixture was cooled using an ice/water bath with stirring for 2.33 hours. The temperature at the start of the stir time was 3.8 °C, and -2.8 °C at the end.
10. 10. The solid was isolated by filtration on a Buchner funnel lined with a polypropylene felt filter pad. The filtrate was collected in a collection flask.
11. 11. The solid was washed with ethyl acetate (2.62 L), cooled to 4.7 °C.
12. 12. In a hood, the solid was transferred to two drying trays.
13. 13. The solid was then dried at 51-65 °C under a vacuum of 27" of Hg for 19 hours 10 minutes in a vacuum oven equipped with a vacuum gauge and a temperature recorder.
14. 14. The solid was sampled to determine the % Loss on Drying (LOD). The LOD was determined to be 0.65 % and 0.62 % on the two samples taken.
15. 15. N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride was packaged into four 1L, Type 3, Amber Wide-Mouth Bottles with Teflon-Lined Caps and labeled.
16. 16. The isolated yield was 1.132 kg, 86.3%.
17. 17. N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride was stored at-25 to-15 °C.

Example 3: Purity Assay for N-(2-Pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride

The purity of N-(2-pyrazinecarbonyl)-L-phenylalanine-L-leucine boronic anhydride (compound 3) was assayed by reverse phase HPLC.

		Water, HPLC grade
		Acetonitrile, HPLC grade
		Formic acid, ACS grade, ≥ 98% pure
		3% Hydrogen peroxide, ACS grade or equivalent
		Autosampler capable of delivering 20-υL injections and maintaining a temperature of 5 °C
		Pump capable of gradient delivery at 1.0 mL/min
		UV detector capable of monitoring effluent at 270 nm
		Symmetry C18 chromatographic column, 250 mm × 4.6 mm ID, 5-µm, Waters, cat# WAT054275.
		acetonitrile/water/formic acid, 30:70:0.1 (v/v/v), degassed
		acetonitrile/water/formic acid, 80:20:0.1 (v/v/v), degassed
		1.0 mL/ min
		UV at 270 nm
		20 µL
		ambient
		5 °C
		Time	%A	%B
		0	100	0
		15	100	0
		30	0	100
		45	0	100
		47	100	0
		55	100	0

The retention time of compound 3 was typically between 10 and 14 minutes when using an HPLC system with a 1.3 minute dwell volume. Compounds 4 and 5 co-eluted at longer retention time, with a resolution of ≥ 2.0.

The relative retention of compound 3 in a sample chromatogram to that in the standard chromatogram was calculated according to the following equation: $R_r=\frac{t_{\mathrm{sam}}}{t_{\mathrm{std}}}$ Where:

Rr

= relative retention

tsam

= retention time of compound 3 peak in the sample chromatogram, minutes

tstd

= retention time of the drug substance peak in the closest preceding standard chromatogram, minutes

Assay results were calculated for each sample according to the following equation: $\%\mathrm{assay}=\frac{A_{\mathrm{sam}}}{A_{\mathrm{std}}}\times \frac{W_{\mathrm{std}}\times P}{W_{\mathrm{sam}}}\times \frac{1}{\left(\frac{100-M}{100}\right)}\times 100$ Where:

Asam

= peak area response of compound 3 in the sample preparation

Astd

= mean peak area response of compound 3 in the working standard preparation

Wstd

= weight of the standard, mg

P

= assigned purity of the standard (decimal format)

Wsam

= weight of the sample, mg

M

= moisture content of the sample, %

100

= conversion to percent

Relative retention and impurity levels in each sample were calculated according to the following equations: $R_r=\frac{t_i}{t_{\mathrm{ds}}}$ Where:

Rr

= relative retention

ti

= retention time of the individual impurity

tds

= retention time of the compound 3 peak

$\%I_i=\frac{A_i\times W_{\mathrm{std}}\times P\times \mathrm{DF}\times \mathrm{RFi}}{A_{\mathrm{std},1\%}\times W_{\mathrm{sam}}}\times 100$ Where:

Ii

= individual impurity

Ai

= peak area response of individual impurity in the sample preparation

Astd,1%

= average peak area response of compound 3 in the 1 % standard preparation

Wstd

= weight of the standard, mg

Wsam

= weight of sample, mg

P

= assigned purity of the standard (decimal format)

DF

= dilution factor, 1/100

RFi

= relative response factor of individual impurity

100

= conversion to percentage factor

When assayed by this method, N-(2-pyrazinecarbonyl)-L-phenylalanine-L-leucineboronic anhydride from Example 2 showed total impurities of less than 1%.

While the foregoing invention has been described in some detail for purposes of clarity and understanding, these particular embodiments are to be considered as illustrative and not restrictive.

Claims (8)

1. A large-scale process for forming a compound of formula (XIV): or a boronic acid anhydride thereof, comprising the steps:

   (aa) coupling a compound of formula (XVIII): or an acid addition salt thereof, with a compound of formula (XIX): wherein:

   P¹ is a cleavable amino group protecting moiety; and

   X is OH or a leaving group;

   to form a compound of formula (XX): wherein P¹ is as defined above, said coupling step (aa) comprising the steps:

   (i) coupling the compound of formula ( XVIII ) with a compound of formula ( XIX ) wherein X is OH in the presence of 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU) and a tertiary amine in dichloromethane;

   (ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and

   (iii) performing an aqueous wash of the ethyl acetate solution;

   (bb) removing the protecting group P¹ to form a compound of formula ( XXI ): or an acid addition salt thereof, said protecting group removing step (bb) comprising the steps:

   (i) treating the compound of formula ( XX ) with HCl in ethyl acetate;

   (ii) adding heptane to the reaction mixture; and

   (iii)isolating by crystallization the compound of formula ( XXI ) as its HCl addition salt;

   (cc) coupling the compound of formula ( XXI ) with a reagent of formula ( XXII ) wherein X is a OH or a leaving group, to form a compound of formula ( XXIII ): said coupling step (cc) comprising the steps:

   (i) coupling the compound of formula ( XXI ) with 2-pyrazinecarboxylic acid in the presence of TBTU and a tertiary amine in dichloromethane;

   (ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and

   (iii) performing an aqueous wash of the ethyl acetate solution; and

   (dd) deprotecting the boronic acid moiety to form the compound of formula ( XIV ) or a boronic acid anhydride thereof, said deprotecting step (dd) comprising the steps:

   (i) providing a biphasic mixture comprising the compound of formula ( XXIII ), an organic boronic acid acceptor, a lower alkanol, a C_5-8 hydrocarbon solvent, and aqueous mineral acid;

   (ii) stirring the biphasic mixture to afford the compound of formula ( XIV );

   (iii)separating the solvent layers; and

   (iv) extracting the compound of formula ( XIV ), or a boronic acid anhydride thereof, into an organic solvent.
2. The process of claim 1, wherein P¹ is tert-butoxycarbonyl.
3. The process of claim 1 or 2, wherein the ethyl acetate solution from step (aa)(iii) is dried azeotropically and then treated with gaseous HCl.
4. The process of claim 1, wherein step (dd)(iii) comprises the steps:

   (1) separating the solvent layers;

   (2) adjusting the aqueous layer to basic pH;

   (3) washing the aqueous layer with an organic solvent; and

   (4) adjusting the aqueous layer to a pH less than 8.
5. The process of claim 4, wherein in step (dd)(iii)(4), the aqueous layer is adjusted to a pH less than 6.
6. The process of claim 4, wherein in step (dd)(iv), the compound of formula ( XIV ), or a boronic acid anhydride thereof, is extracted into dichloromethane, the solvent is exchanged to ethyl acetate, and the compound of formula ( XIV ), or a boronic acid anhydride thereof, is crystallized by addition of hexane or heptane.
7. The process of claim 6, wherein addition of hexane or heptane results in crystallization of a cyclic trimeric boronic acid anhydride of formula ( XXIV ):
8. The process of any preceding claim, wherein the process utilizes at least 5 moles of at least one starting material.