GB2381948A

GB2381948A - An ion tunnel ion trap

Info

Publication number: GB2381948A
Application number: GB0214581A
Authority: GB
Inventors: Robert Harold Bateman; Kevin Giles; Steve Pringle
Original assignee: Micromass UK Ltd
Current assignee: Micromass UK Ltd
Priority date: 2001-06-25
Filing date: 2002-06-24
Publication date: 2003-05-14
Anticipated expiration: 2022-06-24
Also published as: EP1271611A2; EP1271611A3; GB2382920A; CA2391140A1; CA2391474A1; GB2382920B; US20030006370A1; US6960760B2; US6903331B2; US6812453B2; US20050178958A1; US20040195505A1; EP1271608A3; GB0214639D0; GB0214581D0; CA2391140C; GB2381948B; EP1271608A2; US20030001088A1; EP1271608B1

Abstract

A mass spectrometer including an ion tunnel ion trap 1 comprising a plurality of ring or plate-like electrodes having apertures (see figure 3), each of substantially the same size, through which ions are transmitted. The electrodes forming the ion trap are connected to both a DC and AC or RF voltage supply. Preferably adjacent electrodes are connected to opposite phases of the AC/RF supply, the peak voltage of which may be varied, while a axial DC potential gradient is maintained along at least a portion of the ion tunnel. In other modes of operation a V-shaped, W-shaped, sinusoidal, curved, stepped or linear axial DC potential profile, or a profile comprising at least one DC potential well, may be applied to the apertured electrodes (see figures 4-7). The ion trap may be connected to a TOF mass spectrometer, and a gas may also be introduced to the ion trap for collisional cooling of the ions without fragmentation.

Description

- 1- 2381948

75567004.353

MASS SPECTROMETER

5 The present invention relates to mass spectrometers. I Time of flight mass analysers are discontinuous devices in that they receive a packet of ions which is then injected into the drift region of the time of 10 flight mass analyser by energising a pusher/puller electrode. Once injected into the drift regions, the ions become temporally separated according to their mass to charge ratio and the time taken for an ion to reach a detector can be used to give an accurate determination 15 of the mass to charge ratio of the ion in question.

Many commonly used ion sources are continuous ion sources such as Electrospray or Atmospheric Pressure Chemical Ionisation ("APCI"). In order to couple a continuous ion source to a discontinuous time of flight 20 mass analyser an ion trap may be used. The ion trap may continuously accumulate ions from the ion source and periodically release ions in a pulsed manner so as to ensure a high duty cycle when coupled to a time of flight mass analyser.

25 A commonly used ion trap is a 3D quadrupole ion trap. 3D quadrupole ion traps comprise a central doughnut shaped electrode together with two generally concave endcap electrodes with hyperbolic surfaces. 3D quadrupole ion traps are relatively small devices and 30 the internal diameter of the central doughnut shaped electrode may be less than 1 cm with the two generally concave endcap electrodes being spaced by a similar amount. Once appropriate confining electric fields have

been applied to the ion trap, then the ion containment 35 volume (and hence the number of ions which may be trapped) is relatively small. The maximum density of ions which can be confined in a particular volume is limited by space charge effects since at high densities

ions begin to electrostatically repel one another.

It is desired to provide an improved ion trap, particularly one which is suitable for use with a time of flight mass analyzer.

5 According to a first aspect of the present invention, there is provided a mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are 10 transmitted in use; and a time of flight mass analyser.

In all embodiments of the present invention ions are not substantially fragmented within the ion tunnel ion trap i.e. the ion tunnel ion trap is not used as a 15 fragmentation cell. Furthermore, an ion tunnel ion trap should not be construed as covering either a linear 2D rod set ion trap or a 3D quadrupole ion trap. An ion tunnel ion trap is different from other forms of ion optical devices such as multipole rod set ion guides 20 because the electrodes forming the main body of the ion trap comprise ring, annular, plate or substantially closed loop electrodes. Ions therefore travel within an aperture within the electrode which is not the case with multipole rod set ion guides.

25 The ion tunnel ion trap is advantageous compared with a 3D quadrupole ion trap since it may have a much larger ion confinement volume. For example, the ion confinement volume of the ion tunnel ion trap may be selected from the group consisting: (i) 2 20 mm3; (ii) 30 50 mm3; (iii) 2 00 mm3; (iv) 200 mm3; (v) 500 mm3; (vi) 2 1000 mm3; (vii) 1500 mm3; (viii) 2000 mm3; (ix) 2500 mm3; (x) 3000 mm3; and (xi) 2 3500 mm3.

The increase in the volume available for ion storage may be at least a factor x2, x3, x4, x5, x6, x7, x8, x9, 35 xlO, or more than x3O compared with a conventional 3D quadrupole ion trap.

The time of flight analyser comprises a pusher and/or puller electrode for ejecting packets of ions , B'-1 11 11 110111 111111 11'115 1 11 i 1111111|11 11111 5115 1 1, 1

- 3 - into a substantially field free or drift region wherein

ions contained in a packet of ions are temporally separated according to their mass to charge ratio. Ions are preferably arranged to be released from the ion 5 tunnel ion trap at a predetermined time before or at substantially the same time that the pusher and/or puller electrode ejects a packet of ions into the field

free or drift region.

Most if not all of the electrodes forming the ion 10 tunnel ion trap are connected to an AC or RF voltage supply which acts to confine ions with the ion tunnel ion trap. According to less preferred embodiments, the voltage supply may not necessarily output a sinusoidal waveform, and according to some embodiments a non 15 sinusoidal waveform such as a square wave may be provided. The ion tunnel ion trap is arranged to accumulate and periodically release ions without substantially fragmenting ions. According to a particularly preferred 20 embodiment, an axial DC voltage gradient may be maintained in use along at least a portion of the length of the ion tunnel ion trap. An axial DC voltage gradient may be particularly beneficial in that it can be arranged so as to urge ions within the ion trap 25 towards the downstream exit region of the ion trap.

When the trapping potential at the exit of the ion trap is then removed, ions are urged out of the ion tunnel ion trap by the axial DC voltage gradient. This represents a significant improvement over other forms of 30 ion traps which do not have axial DC voltage gradients.

Preferably, the axial DC voltage difference maintained along a portion of the ion tunnel ion trap is selected from the group consisting of: (i) 0.10.5 V; (ii) 0.5-.0 V; (iii) 1.0-.5 V; (iv) l.5-2.0 V; (v) 35 2.0-2.5 V; (vi) 2.5-3.0 V; (vii) 3.0-3.5 V; (viii) 3.5 4.0 V; (ix) 4.0-4.5 V; (x) 4. 5-5.0 V; (xi) 5.0-5.5 V; (xii) 5.5-6.0 V; (xiii) 6.0-6.5 V; (xiv) 6.5-7.0 V; (xv) 7.0-7.5 V; (xvi) 7.5-.0 V; (xvii).0-3.5 V; (xviii)

8.5-9.0 V; (xix) 9.0-9.5 V; (xx) 9.5-10.0 V; and (xxi) > lOV. Preferably, an axial DC voltage gradient is maintained along at least a portion of ion tunnel ion trap selected from the group consisting of: (i) 0.01 5 0. 05 V/cm; (ii) 0.05-0.10 V/cm; (iii) 0.10-0.15 V/cm; (iv) 0.15-0.20 V/cm; (v) 0.20-0.25 V/cm; (vi) 0.25-0.30 V,lcm; (viii 0.30-0.35 V/cm; (viii) 0. 35-0.40 V/cm; (ix) 0.40-0.45 V/cm; (x) 0.45-0.50 V/cm; (xi) 0.50-0.6-0 NT/Cmj (xii) 0.60-0.70 V/cm; (xiii) 0.70-0.80 V/cm; (xiv) O.So lO 0.90 V/cm; (xv) 0.90-1.0 V/cm; (xvi) 1.0-1.5 V/cm; (xvii) 1.5-2.0 V/cm; (xviii) 2.0-2.5 V/cm; (xix) 2.5-3.0 V/cm; and (xx):> 3.0 V/cm.

In a preferred form, the ion tunnel ion trap comprises a plurality of segments, each segment 15 comprising a plurality of electrodes having apertures through which ions are transmitted and wherein all the electrodes in a segment are maintained at substantially the same DC potential and wherein adj acent electrodes in a segment are supplied with different phases of an AC or 20 RF voltage. A segmented design simplifies the electronics associated with the ion tunnel ion trap.

The ion tunnel ion trap preferably consists of: (i) 10-20 electrodes; (ii) 20-30 electrodes; (iii) 30-40 electrodes; (iv) 40-50 electrodes; (v) 5060 electrodes; 25 (vi) 60-70 electrodes; (vii) 70-80 electrodes; (viii) BO-90 electrodes; (ix) 90-lOO electrodes; (x) 100-llO electrodes; (xi) 110-120 electrodes; (xii) 120-130 electrodes; (xiii) 130-140 electrodes; (xiv) 140-150 electrodes; (xv) > 150 electrodes; (xvi) 5 electrodes; 30 and (xvii) lO electrodes.

The diameter of the apertures of at least 50\ of the electrodes forming the ion tunnel ion trap is preferably selected from the group consisting of: (i) 10 mm; (ii) 9 mm; (iii) < 8 mm; (iv) 7 mm; (v) 6 35 mm; (vi) 5 mm; (vii) 4 mm; (viii) s 3 mm; (ix) s 2 mm; and (x) s 1 mm. At least 50, 60, 70%, 80, 909 or 95 of the electrodes forming the ion tunnel ion trap may have apertures which are substantially the same size __,,,,,_,,,,__,,,,_', ,_ # e 'ill 1 1 1111 1111 11 11 1111111 1 11l' 11l'11. 11111 111 11111111 11 11111111 1115 11

- 5 - or area in contrast to an ion funnel arrangement. The thickness of at least 50 of the electrodes forming the ion tunnel ion trap may be selected from the group consisting of: (i) 3 mm; (ii) 2.5 mm; (iii) 2.0 5 mm; (iv) 1.5 mm; (v) 1.0 mm; and (vi) 0.5 mm.

Preferably, at least 10\, 20\, 30, 40%, 50%, 60\, 70\, 80, 90\, or 95 of the electrodes are connected to both a DC and an AC or RF voltage supply. Preferably, the ion tunnel ion trap has a length selected from the group 10 consisting of: (i) < 5 cm; (ii) 5-10 cm; (iii) 10-15 cm; (iv) 15-20 cm; (v) 20-25 cm; (vi) 25-30 cm; and (vii) 30 cm.

Preferably, means is provided for introducing a gas into the ion tunnel ion trap for collisional cooling 15 without fragmentation of ions. Ions emerging from the ion tunnel ion trap will therefore have a narrower spread of energies which is beneficial when coupling the ion trap to a time of flight mass analyzer. The ions may be arranged to enter the ion tunnel ion trap with a 20 majority of the ions having an energy 5 eV for a singly charged ion so as to cause collisional cooling of the ions. The ion tunnel ion trap may be maintained, in use, at a pressure selected from the group consisting of: (i) > 1.0 x 10-3 mbar; (ii) > 5.0 X 10-3 mbar; (iii) 25 1.0 x 10-2 mbar; (iv) 10 3-10 2 mbar; and (v) 10-4-10-l mbar. Although the ion tunnel ion trap is envisaged to be used primarily with a continuous ion source other embodiments of the present invention are contemplated 30 wherein a pulsed ion source may nonetheless be used.

The ion source may comprise an Electrospray ("ESI"), Atmospheric Pressure Chemical Ionisation ("APCI"), Atmospheric Pressure Photo Ionisation ("APPI"), Matrix Assisted Laser Desorption Ionisation ("MALDI"), Laser 35 Desorption Ionisation ion source, Inductively Coupled Plasma ("ICP"), Electron Impact ("EI") or Chemical Ionisation ("CI") ion source.

Preferred ion sources such as Electrospray or APCI

ion sources are continuous ion sources whereas a time of flight analyser is a discontinuous device in that it requires a packet of ions. The ions are then injected with substantially the same energy into a drift region.

5 Ions become temporally separated in the drift region accordingly to their differing masses, and the transit time of the ion through the drift region is measured giving an indication of the mass of the ion. T He 1on tunnel ion trap according to the preferred embodiment is 10 effective in essentially coupling a continuous ion source with a discontinuous mass analyzer such as a time of flight mass analyzer.

Preferably, the ion tunnel ion trap comprises an entrance and/or exit electrode for trapping ions within 15 the ion tunnel ion trap.

According to a second aspect of the present invention, there is provided a mass spectrometer comprising: an ion tunnel ion trap comprising 10 ring or 20 plate electrodes having substantially similar internal apertures between 2-10 mm in diameter and wherein a DC potential gradient is maintained, in use, along a portion of the ion tunnel ion trap and two or more axial potential wells are formed along the length of the ion 25 trap The DC potential gradient can urge ions out of the ion trap once a trapping potential has been removed.

According to a third aspect of the present invention, there is provided: 30 an ion tunnel ion trap comprising at least three segments, each segment comprising at least four electrodes having substantially similar sized apertures through which ions are transmitted in use; wherein in a mode of operation: 35 electrodes in a first segment are maintained at substantially the same first DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; _ _ _ i,. Ilil I I I fell l l _l l lll!rII I 111 11111 11 Fat 1111 1 1 1 11 Aft 1 nE 111

electrodes in a second segment are maintained at substantially the same second DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; 5 electrodes in a third segment are maintained at substantially the same third DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; wherein the first, second and third DC potentials 10 are all different.

The ability to be able to individually control multiple segments of an ion trap affords significant versatility which is not an option with conventional ion traps. For example, multiple discrete trapping regions 15 can be provided.

According to a fourth aspect of the present invention, there is provided a mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of 20 electrodes having apertures through which ions are transmitted in use, wherein the transit time of ions through the ion tunnel ion trap is selected from the group comprising: (i) 0.5 ma; (ii) 1. 0 ms; (iii) 5 ms; (iv) 10 ms; (v) 20 ms; (vi) 0.01-0.5 ms; (vii) 25 0.5-l ma; (viii) 1-5 ms; (ix) 5-10 me; and (x) 10-20 ma.

By providing an axial DC potential ions can be urged through the ion trap much faster than conventional ion traps.

According to a fifth aspect of the present 30 invention, there is provided a mass spectrometer comprising: an ion tunnel ion trap, the ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use, and wherein 35 in a mode of operation trapping DC voltages are supplied to some of the electrodes so that ions are confined in two or more axial DC potential wells.

The ability to provide two or more trapping regions

in a single ion trap is particularly advantageous.

According to a sixth aspect of the present invention, there is provided a mass spectrometer comprising: 5 an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use, and wherein in a mode of operation a V-shaped, Wshaped, U-shaped, sinusoidal, curved, stepped or linear axial DC potential profile is 10 maintained along at least a portion of the ion tunnel ion trap.

Since preferably the DC potential applied to individual electrodes or groups of electrodes can be individually controlled, numerous different desired 15 axial DC potential profiles can be generated.

According to a seventh aspect of the present invention, there is provided a mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of 20 electrodes having apertures through which ions are transmitted in use, and wherein in a mode of operation an upstream portion of the ion tunnel ion trap continues to receive ions into the ion tunnel ion trap whilst a downstream portion of the ion tunnel ion trap separated 25 from the upstream portion by a potential barrier stores and periodically releases ions. According to this arrangement, no ions are lost as the ion trap substantially stores all the ions it receives.

Preferably, the upstream portion of the ion tunnel 30 ion trap has a length which is at least 10%, 20%, 30%, 40, 50%, 60%, 70%, 80, or 90 of the total length of the ion tunnel ion trap. Preferably, the downstream portion of the ion tunnel ion trap has a length which is less than or equal to 10%, 20%, 30%, 40%, 50%, 60, 70, 35 80%, or 90% of the total length of the ion tunnel ion trap. Preferably, the downstream portion of the ion tunnel ion trap is shorter than the upstream portion of the ion tunnel ion trap.

,__._. ' i' ' - ORB II! I8RIIIIIBIII IIIllBllilill lllIIII iIII 1 lilll. l l I.lI 1llll l It llIII IIII 1 ll 1l aim ll if lit I

- 9 According to an eighth aspect of the present invention, there is provided a mass spectrometer comprising: a continuous ion source for emitting a beam of 5 ions; an ion trap arranged downstream of the ion source, the ion trap comprising 5 electrodes having apertures through which ions are transmitted in use, wherein the electrodes are arranged to radially confine ions within 10 the apertures, and wherein ions are accumulated and periodically released from the ion trap without substantial fragmentation of the ions; and a discontinuous mass analyzer arranged to receive ions released from the ion trap.

15 Preferably, an axial DC voltage gradient is maintained along at least 5\, 10%, 15\, 20\, 25, 30t, 35, 40, 45, 50i, 55, 60t, 65, 70\, 75\, 80, 85\, 90 or 95 of the length of the ion trap.

Preferably, the continuous ion source comprises an 20 Electrospray or Atmospheric Pressure Chemical Ionisation on source.

Preferably, the discontinuous mass analyser comprises a time of flight mass analyser.

According to a ninth aspect of the present 25 invention, there is provided a method of mass spectrometry, comprising: trapping ions in an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use; and 30 releasing ions from the ion tunnel ion trap to a time of flight mass analyser.

Preferably, an axial DC voltage gradient is maintained along at least a portion of the length of the ion trap.

35 Various embodiments of the present invention will now be described, by way of example only, and with reference to the accompanying drawings in which: Fig. 1 shows a preferred ion tunnel ion trap;

- 10 Fig. 2 shows another ion tunnel ion trap wherein the DC voltage supply to each ion tunnel segment is individually controllable; Fig. 3(a) shows a front view of an ion tunnel 5 segment, Fig. 3(b) shows a side view of an upper ion tunnel section, and Fig. 3(c) shows a plan view of an ion tunnel segment; Fig. 4 shows an axial DC potential profile as a function of distance at a central portion of an ion JO tunnel ion trap; Fig. 5 shows a potential energy surface across a number of ion tunnel segments at a central portion of an ion tunnel ion trap; Fig. 6 shows a portion of an axial DC potential 15 profile for an ion tunnel ion trap being operated in an trapping mode without an accelerating axial DC potential gradient being applied along the length of the ion tunnel ion trap; and Fig. 7(a) shows an axial DC potential profile for 20 an ion tunnel ion trap operated in a "fill" mode of operation, Fig. 7(b) shows a corresponding "closed" mode of operation, and Fig. 7(c) shows a corresponding "empty" mode of operation.

A preferred ion tunnel ion trap will now be 25 described in relation to Figs. 1 and 2. The ion tunnel ion trap 1 comprises a housing having an entrance aperture 2 and an exit aperture 3. The entrance and exit apertures 2,3 are preferably substantially circular apertures. The plates forming the entrance and/or exit 30 apertures 2,3 may be connected to independent programmable DC voltage supplies (not shown).

Between the plate forming the entrance aperture 2 and the plate forming the exit aperture 3 are arranged a number of electrically isolated ion tunnel segments 35 4a,4b,4c. In one embodiment fifteen segments 4a,4b,4c are provided. Each ion tunnel segment 4a;4b;4c comprises two interleaved and electrically isolated sections i.e. an upper and lower section. The ion ,.__.,. __,, a Ilr Il le l 11 t ' 11 1 a 1 11111111 11 1 1 111 11511!

- 11 tunnel segment 4a closest to the entrance aperture 2 preferably comprises ten electrodes (with five electrodes in each section) and the remaining ion tunnel segments 4b,4c preferably each comprise eight electrodes 5 (with four electrodes in each section). All the electrodes are preferably substantially similar in that they have a central substantially circular aperture (preferably 5 mm in diameter) through which ions are transmitted. The entrance and exit apertures 2,3 may be 10 smaller e.g. 2.2 mm in diameter than the apertures in the electrodes or the same size.

All the ion tunnel segments 4a,4b,4c are preferably connected to the same AC or RF voltage supply, but different segments 4a;4b;4c may be provided with 15 different DC voltages. The two sections forming an ion tunnel segment 4a;4b;4c are connected to different, preferably opposite, phases of the AC or RF voltage supply. A single ion tunnel section is shown in greater 20 detail in Figs. 3(a)-(c). The ion tunnel section has four (or five) electrodes 5, each electrode S having a 5 mm diameter central aperture 6. The four (or five) electrodes 5 depend or extend from a common bar or spine 7 and are preferably truncated at the opposite end to 25 the bar 7 as shown in Fig. 3(a). Each electrode 5 is typically 0.5 mm thick. Two ion tunnel sections are interlocked or interleaved to provide a total of eight (or ten) electrodes 5 in an ion tunnel segment 4a;4b;4c with a 1 mm inter-electrode spacing once the two 30 sections have been interleaved. All the eight (or ten) electrodes 5 in an ion tunnel segment 4a;4b;4c comprised of two separate sections are preferably maintained at substantially the same DC voltage. Adjacent electrodes in an ion tunnel segment 4a;4b;4c comprised of two 35 interleaved sections are connected to different, preferably opposite, phases of an AC or RF voltage supply i. e. one section of an ion tunnel segment 4a;4b;4c is connected to one phase (RF+) and the other

- 12 section of the ion tunnel segment 4a;4b;4c is connected to another phase (RF-).

Each ion tunnel segment 4a;4b;4c is mounted on a machined PEEK support that acts as the support for the 5 entire assembly. Individual ion tunnel sections are located and fixed to the PEEK support by means of a dowel and a screw. The screw is also used to provide the electrical connection to the ion tunnel section.

The PEEK supports are held in the correct orientation by lo two stainless steel plates attached to the PEEK supports using screws and located correctly using dowels. These plates are electrically isolated and have a voltage applied to them.

Gas for collisionally cooling ions without 15 substantially fragmenting ions may be supplied to the ion tunnel ion trap l via a 4.5 mm ID tube.

The electrical connections shown in Fig. l are such that a substantially regular stepped axial accelerating DC electric field is provided along the length of the

20 ion tunnel ion trap 1 using two programmable DC power supplies DCl and DC2 and a resistor potential divider network of 1 MQ resistors. An AC or RF voltage supply provides phase (RF+) and anti-phase (RF-) voltages at a frequency of preferably 1.75 MHz and is coupled to the 25 ion tunnel sections 4a,4b,4c via capacitors which are preferably identical in value (lOOpF). According to other embodiments the frequency may be in the range of 0.1-3.0 MHz. Four 10 OH inductors are provided in the DC supply rails to reduce any RF feedback onto the DC 30 supplies. A regular stepped axial DC voltage gradient is provided if all the resistors are of the same value.

Similarly, the same AC or RF voltage is supplied to all the electrodes if all the capacitors are the same value.

Fig. 4 shows how, in one embodiment, the axial DC 35 potential varies across a 10 cm central portion of the ion tunnel ion trap l. The intersegment voltage step in this particular embodiment is -1V. However, according to more preferred embodiments lower voltage ,,_ 1 1 1! 111_ 1 1111 11 11 81 1111 1 111 1 11 111 1 1 1 1111 1 1 1 1 1 1 111 1 111 1 1 1 11 1 111 1 1 1111

- 13 steps of e.g. approximately -0.2V may be used. Fig. 5 shows a potential energy surface across several ion tunnel segments 4b at a central portion of the ion tunnel ion trap 1. As can be seen, the potential energy 5 profile is such that ions will cascade from one ion tunnel segment to the next.

As will now be described in relation to Fig. 1, the ion tunnel ion trap 1 traps, accumulates or otherwise confines ions within the ion tunnel ion trap 1. In the 10 embodiment shown in Fig. 1, the DC voltage applied to the final ion tunnel segment 4c (i.e. that closest and adjacent to the exit aperture 3) is independently controllable and can in one mode of operation be maintained at a relatively high DC blocking or trapping 15 potential (DC3) which is more positive for positively charged ions (and vice versa for negatively charged ions) than the preceding ion tunnel segment(s) 4b.

Other embodiments are also contemplated wherein other ion tunnel segments 4a,4b may alternatively and/or 20 additionally be maintained at a relatively high trapping potential. When the final ion tunnel segment 4c is being used to trap ions within the ion tunnel ion trap 1, an AC or RF voltage may or may not be applied to the final ion tunnel segment 4c.

25 The DC voltage supplied to the plates forming the entrance and exit apertures 2,3 is also preferably independently controllable and preferably no AC or RF voltage is supplied to these plates. Embodiments are also contemplated wherein a relatively high DC trapping 30 potential may be applied to the plates forming entrance and/or exit aperture 2,3 in addition to or instead of a trapping potential being supplied to one or more ion tunnel segments such as at least the final ion tunnel segment 4c.

35 In order to release ions from confinement within the ion tunnel ion trap 1, the DC trapping potential applied to e.g. the final ion tunnel segment 4c or to the plate forming the exit aperture 3 is preferably

- 14 momentarily dropped or varied, preferably in a pulsed manner. In one embodiment the DC voltage may be dropped to approximately the same DC voltage as is being applied to neighbouring ion tunnel segment(s) 4b. Embodiments 5 are also contemplated wherein the voltage may be dropped below that of neighbouring ion tunnel segment(s) so as to help accelerate ions out of the ion tunnel ion trap 1. In another embodiment a V-shaped trapping potential may be applied which is then changed to a linear profile 10 having a negative gradient in order to cause ions to be accelerated out of the ion tunnel ion trap 1. The voltage on the plate forming the exit aperture 3 can also be set to a DC potential such as to cause ions to be accelerated out of the ion tunnel ion trap 1.

15 Other less preferred embodiments are contemplated wherein no axial DC voltage difference or gradient is applied or maintained along the length of the ion tunnel ion trap 1. Fig. 6, for example, shows how the DC potential may vary along a portion of the length of the 20 ion tunnel ion trap l when no axial DC field is applied

and the ion tunnel ion trap l is acting in a trapping or accumulation mode. In this figure, 0 mm corresponds to the midpoint of the gap between the fourteenth 4b and fifteenth (and final) 4c ion tunnel segments. In this 25 particular example, the blocking potential was set to +5V (for positive ions) and was applied to the last (fifteenth) ion tunnel segment 4c only. The preceding fourteen ion tunnel segments 4a,4b had a potential of -

1V applied thereto. The plate forming the entrance 30 aperture 2 was maintained at 0V DC and the plate forming the exit aperture 3 was maintained at -1V.

More complex modes of operation are contemplated wherein two or more trapping potentials may be used to isolate one or more section(s) of the ion tunnel ion 35 trap 1. For example, Fig. 7(a) shows a portion of the axial DC potential profile for an ion tunnel ion trap 1 according to one embodiment operated in a "fill" mode of operation, Fig. 7(b) shows a corresponding "closed" mode _....,,_ e! - 1!1511111111 1111 1 11111 1 @ 111 11 1 11 1! 1111 1 1 i I I 111111!111 1 111 1 1Bl lllll ll 1lll I

- 15 of operation, and Fig. 7(c) shows a corresponding "empty" mode of operation. By sequencing the potentials, the ion tunnel ion trap 1 may be opened, closed and then emptied in a short defined pulse. In 5 the example shown in the figures, 0 mm corresponds to the midpoint of the gap between the tenth and eleventh ion tunnel segments 4b. The first nine segments 4a,4b are held at -1V, the tenth and fifteenth segments 4b act as potential barriers and ions are trapped within the 10 eleventh, twelfth, thirteenth and fourteenth segments 4b. The trap segments are held at a higher DC potential (+5V) than the other segments 4b. When closed the potential barriers are held at +5v and when open they are held at -1V or -5V. This arrangement allows ions to 15 be continuously accumulated and stored, even during the period when some ions are being released for subsequent mass analysis, since ions are free to continually enter the first nine segments 4a,4b. A relatively long upstream length of the ion tunnel ion trap 1 may be used 20 for trapping and storing ions and arelatively short downstream length may be used to hold and then release ions. By using a relatively short downstream length, the pulse width of the packet of ions released from the ion tunnel ion trap 1 may be constrained. In other 25 embodiments multiple isolated storage regions may be provided. Although the present invention has been described with reference to preferred embodiments, it will be understood by those skilled in the art that various 30 changes in form and detail may be made without departing from the scope of the invention as set forth in the accompanying claims.

Claims

- 16 75567004.353

Claims

5 1. A mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use; and a time of flight mass analyser.

2. A mass spectrometer as claimed in claim 1, wherein said electrodes are connected to an AC or RF voltage supply. 15 3. A mass spectrometer as claimed in claim 1 or 2, wherein said ion tunnel ion trap accumulates and periodically releases ions without substantially fragmenting ions.

20 4. A mass spectrometer as claimed in claim 2 or 3, wherein an axial DC voltage gradient is maintained in use along at least a portion of the length of the ion trap. 25 5. A mass spectrometer as claimed in any preceding claim, wherein said ion tunnel ion trap comprises a plurality of segments, each segment comprising a plurality of electrodes having apertures through which ions are transmitted and wherein all the electrodes in a 30 segment are maintained at substantially the same DC potential and wherein adjacent electrodes in a segment are supplied with different phases of an AC or RF voltage. 35 6. A mass spectrometer as claimed in any preceding claim, wherein said ion tunnel ion trap consists of: (i) 10-20 electrodes; (ii) 20-30 electrodes; (iii) 30-40 electrodes; (iv) 40-50 electrodes; (v) 50-60 electrodes; ,, l,,, 1,,,, I. 111 11 1 111 1 11111111 1 111 1il 11 11 11111

- 17 (vi) 60-70 electrodes; (vii) 70- 30 electrodes; (viii) 80-90 electrodes; (ix) 90-100 electrodes; (x) 100-110 electrodes; (xi) 110-120 electrodes; (xii) 120-130 electrodes; (xiii) 130-140 electrodes; (xiv) 140-150 5 electrodes; (xv) > 150 electrodes; (xvi) 5 electrodes; and (xvii) 2 10 electrodes.

7. A mass spectrometer as claimed in any preceding claim, wherein the diameter of the apertures of at least 10 50\ of the electrodes forming said ion tunnel ion trap is selected from the group consisting of: (i) 10 mm; (ii) 9 mm; (iii) 8 mm; (iv) 7 mm; (v) 6 mm; (vi) 5 mm; (vii) 4 mm; (viii) 3 mm; (ix) 2 mm; and (x) l mm.

8. A mass spectrometer as claimed in any preceding claim, wherein said ion tunnel ion trap is maintained, in use, at a pressure selected from the group consisting of: (i) 1.0 x 10-3 mbar; (ii) 5.0 X 10-3 mbar; (iii) > 20 1.0 x 10-2 mbar; (iv) 10-3-10-2 mbar; and (v) 10 9-1O mbar. 9. A mass spectrometer as claimed in any preceding claim, wherein at least 50t, 60, 70, 80t, 90\ or 95 25 of the electrodes forming the ion tunnel ion trap have apertures which are substantially the same size or area.

10. A mass spectrometer as claimed in any preceding claim, wherein the thickness of at least 50\ of the 30 electrodes forming said ion tunnel ion trap is selected from the group consisting of: (i) 3 mm; (ii) 2.5 mm; (iii) 2.0 mm; (iv) 1.5 mm; (v) 1.0 mm; and (vi) 0.5 mm.

35 11. A mass spectrometer as claimed in any preceding claim, further comprising a continuous or pulsed ion source.

- 18 12. A mass spectrometer as claimed in any of claims 1-

10, further comprising an ion source selected from the group consisting of: (i) Electrospray ("ESI") ion source; (ii) Atmospheric Pressure Chemical Ionisation 5 ("APCI") ion source; (iii) Atmospheric Pressure Photo Ionisation ("APPI") ion source; (iv) Matrix Assisted Laser Desorption Ionisation ("MALDI") ion source; (v) Laser Desorption Ionisation ion source; Evil Inductively Coupled Plasma ("ICP") ion source; (vii) Electron Impact 10 ("EI) ion source; and (viii) Chemical Ionisation ("CI") ion source.

13. A mass spectrometer as claimed in any preceding claim, wherein at least 10, 20, 30t, 40%, 50%, 60, 15 70%, 80, 90, or 95% of said electrodes are connected to both a DC and an AC or RF voltage supply.

14. A mass spectrometer as claimed in any preceding claim, wherein said ion tunnel ion trap has a length 20 selected from the group consisting of: (i) c 5 cm; (ii) 5-30 cm; (iii) 30-15 cm; (iv) 15-20 cm; (v) 20-25 cm; (vi) 25-30 cm; and (vii) 30 cm.

15. A mass spectrometer as claimed in any preceding 25 claim, wherein an axial DC voltage difference maintained along a portion of the ion tunnel ion trap is selected from the group consisting of: (i) 0.1-0.5 V; (ii) 0. 5-

3.0 V; (iii) 1.0-1.5 V; (iv) 1.5-2.0 V; (v) 2.0-.5 V; (vi) 2.5-3.0 V; (vii) 3.0-3.5 V; (viii) 3.5-4.0 V; (ix) 30 4.0-4.5 V; (x) 4.5-5.0 V; (xi) 5.0-5.5 V; (xii) 5.5-6.0 V; (xiii) 6.0-6.5 V; (xiv) 6.5-.0 V; (xv) 7.0-.5 V; (xvi) 7.5-B.0 V; (xvii) 8.0-B.5 V; (xviii) 8.5-9.0 V; (xix) 9.0-9.5 V; (xx) g.5-10.0 V; and (xxi) lOV.

35 16. A mass spectrometer as claimed in any preceding claim, wherein an axial DC voltage gradient is maintained along at least a portion of ion tunnel ion trap selected from the group consisting of: (i) 0.01 t1_511 1_1 1! 1 1 111 1 111 11 1 1 15 11 18 1 11 1 1 15 1 1 11 011 1 1. 1 1 1 11 1 1 1 1 aim Aim 1 1 1! 1111 1 1 111 1

- 19 0.05 V/cm; (ii) 0.05-0.10 V/cm; (iii) 0.10-0.15 V/cm; (iv) 0.15-0.20 V/cm; (v) 0.20-0.25 V/cm; (vi) 0.25-0.30 V/cm; (vii) 0.30-0.35 V/cm; (viii) 0.35-0.40 V/cm; (ix) 0.40-0.45 V/cm; (x) O.45-0.50 V/cm; (xi) 0.500.60 V/cm; 5 (xii) 0.60-0.70 V/cm; (xiii) 0.70-0.80 V/cm; (xiv) 0.80 O.gO V/cm; (xv) O.90-1.0 V/cm; (xvi) 1.0-.5 V/cm; (xvii) 1.5-2.0 V/cm; (xviii) 2.0-2.5 V/cm; (xix) 2.5-3.0 V/cm; and (xx) 3.0 V/cm.

10 17. A mass spectrometer as claimed in any preceding claim, wherein said electrodes comprise ring, annular, plate or substantially closed loop electrodes.

18. A mass spectrometer as claimed in any preceding 15 claim, wherein said ion tunnel ion trap comprises an entrance and/or exit electrode for trapping ions within said ion tunnel ion trap.

19. A mass spectrometer as claimed in any preceding 20 claim, further comprising means for introducing a gas into said ion tunnel ion trap for collisional cooling without fragmentation of ions.

20. A mass spectrometer as claimed in any preceding 25 claim, wherein the ion confinement volume of said ion tunnel ion trap is selected from the group consisting: (i) 2 20 mm3; (ii) 2 50 mm3; (iii) 2 100 mm3; (iv) 2 200 mm3; (v) 2 500 mm3; (vi) 1000 mm3; (vii) 2 1500 mm3; (viii) 2000 mm3; (ix) 2 2500 mm3; (x) 2 3000 mm3; and 30 (xi) 3500 mm3.

21. A mass spectrometer as claimed in any preceding claim, wherein said time of flight analyser comprises a pusher and/or puller electrode for ejecting packets of 35 ions into a substantially field free or drift region

wherein ions contained in a packet of ions are temporally separated according to their mass to charge ratio, wherein ions are arranged to be released from

- 20 said ion tunnel ion trap at a predetermined time before or at substantially the same time that said pusher and/or puller electrode ejects a packet of ions into said field free or drift region.

22. A mass spectrometer comprising: an ion tunnel ion trap comprising 10 ring or plate electrodes having substantially similar internal apertures between 2-lO mm in diameter and wherein a DC 10 potential gradient is maintained, in use, along a portion of the ion tunnel ion trap and two or more axial potential wells are formed along the length of the ion trap. 15 23. A mass spectrometer comprising: an ion tunnel ion trap comprising at least three segments, each segment comprising at least four electrodes having substantially similar sized apertures through which ions are transmitted in use; 20 wherein in a mode of operation: electrodes in a first segment are maintained at substantially the same first DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; 25 electrodes in a second segment are maintained at substantially the same second DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; electrodes in a third segment are maintained at 30 substantially the same third DC potential but adjacent electrodes are supplied with different phases of an AC or RF voltage supply; wherein said first, second and third DC potentials are all different.

24. A mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are _.,,,8,,, 115811111111111111111114 llIE111511111 1 11 1l lilll lllil8 lil l lllll l llllllIIIIIIllIIII

- 21 transmitted in use, wherein the transit time of ions through the ion tunnel ion trap is selected from the group comprising: (i) 0.5 ms; (ii) 1. 0 me; (iii) 5 ms; (iv) 10 ms; (v) < 20 ms; (vi) 0.01-0.5 ms; (vii) 5 0.51 ms; (viii) 1-5 ms; (ix) 5-10 ms; and (x) 10-20 ms.

25. A mass spectrometer comprising: an ion tunnel ion trap, said ion tunnel ion trap comprising a plurality of electrodes having apertures 10 through which ions are transmitted in use, and wherein in a mode of operation trapping DC voltages are supplied to some of said electrodes so that ions are confined in two or more axial DC potential wells.

15 26. A mass spectrometer comprising: an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use, and wherein in a mode of operation a V-shaped, Wshaped, U-shaped, sinusoidal, curved, 20 stepped or linear axial DC potential profile is maintained along at least a portion of said ion tunnel ion trap.

27. A mass spectrometer comprising: 25 an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use, and wherein in a mode of operation an upstream portion of the ion tunnel ion trap continues to receive ions into the ion tunnel ion trap whilst a 30 downstream portion of the ion tunnel ion trap separated from the upstream portion by a potential barrier stores and periodically releases ions.

28. A mass spectrometer as claimed in claim 27, wherein 35 said upstream portion of the ion tunnel ion trap has a length which is at least 10%, 20%, 30, 40%, 50%, 60%, 70\, 80, or 90\ of the total length of the ion tunnel ion trap.

- 22 29. A mass spectrometer as claimed in claim 27, wherein said downstream portion of the ion tunnel ion trap has a length which is less than or equal to 10%, 20%, 30, 40%, 50%, 60%, 70%, 80%, or 90% of the total length of 5 the ion tunnel ion trap.

30. A mass spectrometer as claimed in claim 27, wherein the downstream portion of the ion tunnel ion trap is shorter than the upstream portion of the ion tunnel ion lo trap.

31. A mass spectrometer as claimed in any preceding, wherein ions are substantially not fragmented within said ion tunnel ion trap.

32. A mass spectrometer comprising: a continuous ion source for emitting a beam of ions; an ion trap arranged downstream of said ion source, 20 said ion trap comprising 5 electrodes having apertures through which ions are transmitted in use, wherein said electrodes are arranged to radially confine ions within said apertures, and wherein ions are accumulated and periodically released from said ion trap without 25 substantial fragmentation of said ions; and a discontinuous mass analyzer arranged to receive ions released from said ion trap.

33. A mass spectrometer as claimed in claim 32, wherein 30 an axial DC voltage gradient is maintained along at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50t, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90% or 95% of the length of said ion trap.

35 34. A mass spectrometer as claimed in claim 32 or 33, wherein said continuous ion source comprises an Electrospray or Atmospheric Pressure Chemical Ionisation ion source.

,.,'_ It '',._ lie i 1111111B MUG 111 111 1 1 1 ' 1 I 1l 1,. 1 51 Ill' 1l'

- 23 35. A mass spectrometer as claimed in claim 32, 33 or 34, wherein said discontinuous mass analyser comprises a time of flight mass analyser.

5 36. A method of mass spectrometry, comprising: trapping ions in an ion tunnel ion trap comprising a plurality of electrodes having apertures through which ions are transmitted in use; and releasing ions from said ion tunnel ion trap to a 10 time of flight mass analyzer.

37. A method as claimed in claim 36, further comprising maintaining an axial DC voltage gradient along at least a portion of the length of the ion trap.