CN1699576A - An endo-β-1,3 glucanase gene and its cloning method - Google Patents
An endo-β-1,3 glucanase gene and its cloning method Download PDFInfo
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Abstract
Description
技术领域technical field
一种内切β-1,3葡聚糖酶基因及其克隆方法,属于微生物基因工程领域。An endo-beta-1,3 glucanase gene and its cloning method belong to the field of microbial genetic engineering.
背景技术Background technique
β-1,3-葡聚糖酶分为内切β-1,3-葡聚糖酶(EC3.2.1.39)和外切β-1,3-葡聚糖酶(EC3.2.1.58),广泛分布在细菌,真菌和高等植物中。内切β-1,3-葡聚糖酶以内部随机切割方式专一性水解以β-1,3-糖苷键聚合的高分子葡聚糖,产物为寡糖或葡萄糖。β-1,3-glucanase is divided into endo-β-1,3-glucanase (EC3.2.1.39) and exo-β-1,3-glucanase (EC3.2.1.58 ), widely distributed in bacteria, fungi and higher plants. Endo-β-1,3-glucanase specifically hydrolyzes high-molecular-weight glucan polymerized by β-1,3-glucosidic bonds by internal random cutting, and the product is oligosaccharide or glucose.
β-1,3-葡聚糖酶的生理功能因来源而异:在植物中,尽管有研究显示它在细胞分化中起一定作用,但它主要是作为一种病原真菌的防御系统;在细菌中,它起营养作用,因为大部分细菌不含有β-1,3-葡聚糖;在真菌中,β-1,3-葡聚糖酶有许多不同的功能,首先,有研究表明它在真菌发育和分化期间形态的形成与瓦解过程中具有一定生理作用;其次,作为裂解酶类,β-1,3-葡聚糖酶与碳源和能源枯竭时β-1,3-葡聚糖的转移有关系。The physiological function of β-1,3-glucanase varies depending on the source: in plants, although studies have shown that it plays a role in cell differentiation, it is mainly used as a defense system for pathogenic fungi; in bacteria Among them, it plays a nutritional role, because most bacteria do not contain β-1, 3-glucan; in fungi, β-1, 3-glucanase has many different functions. First, studies have shown that it plays a role in It has a certain physiological role in the formation and disintegration of fungal morphology during development and differentiation; secondly, as a lytic enzyme, β-1,3-glucanase interacts with β-1,3-glucan when carbon sources and energy sources are exhausted transfer is related.
β-1,3-糖苷键存在于禾本科植物(玉米、水稻、高粱等)细胞壁半纤维素的非淀粉多糖中,并且一般是在支链上,是导致溶液黏度上升的重要原因之一。内切β-1,3-葡聚糖酶的添加可以使β-1,3-糖苷键支链所形成的网状结构解体,增加多糖的水溶性,进而被有效利用。例如,在饮料工业中,葡聚糖是导致啤酒和果汁浑浊的因素之一,尤其在麦汁过滤过程中葡聚糖的存在严重的阻碍着过滤,大大减慢过滤速度。高活性又稳定的葡聚糖酶的添加无疑大大便于过虑和澄清。另外,在饲料工业中,一方面,β-葡聚糖溶解后使食糜的粘度增大,不利于其他营养成分的消化和吸收;另一方面,未被消化和吸收的葡聚糖具有强烈的吸水性,大大增加了动物的排便量,对环境是极不友好的。内切β-1,3-葡聚糖酶的添加既可以降低饲料的粘度,增加畜禽和鱼类的采食量,又可以减少其排便体积,从而减轻对环境的污染。可见,内切β-1,3-葡聚糖酶开发和研究具有重要意义。The β-1,3-glucosidic bond exists in the non-starch polysaccharide of hemicellulose in the cell wall of gramineous plants (corn, rice, sorghum, etc.), and is generally on the branch chain, which is one of the important reasons for the increase of the solution viscosity. The addition of endo-β-1,3-glucanase can disintegrate the network structure formed by the branched chain of β-1,3-glucosidic bonds, increase the water solubility of the polysaccharide, and then be effectively utilized. For example, in the beverage industry, dextran is one of the factors that cause turbidity of beer and fruit juice, especially in the process of wort filtration, the presence of dextran seriously hinders the filtration and greatly slows down the filtration speed. The addition of highly active and stable dextranase undoubtedly greatly facilitates filtration and clarification. In addition, in the feed industry, on the one hand, the viscosity of chyme increases after β-glucan dissolves, which is not conducive to the digestion and absorption of other nutrients; on the other hand, undigested and absorbed glucan has a strong The high water absorption greatly increases the amount of defecation of animals, which is extremely unfriendly to the environment. The addition of endo-β-1,3-glucanase can not only reduce the viscosity of the feed, increase the feed intake of livestock, poultry and fish, but also reduce the volume of their defecation, thereby reducing the pollution to the environment. It can be seen that the development and research of endo-β-1,3-glucanase is of great significance.
国内外学者在内切β-1,3-葡聚糖酶的异源表达方面进行的研究工作不多。Vladimir V.Zverlov等从热孢菌(Thermotoga neapolitana)中克隆并在大肠杆菌中成功表达了一种嗜热β-1,3-葡聚糖酶(LminA)。Hong等从链霉菌Scholars at home and abroad have done little research on the heterologous expression of endoβ-1,3-glucanase. Vladimir V.Zverlov etc. cloned from Thermotoga neapolitana and successfully expressed a thermophilic β-1,3-glucanase (LminA) in Escherichia coli. Streptomyces
(Streptomyces sioyaensis)中成功克隆并在大肠杆菌中表达了内切β-1,3-葡聚糖酶。蓝海燕等对烟草来源的β-1,3-葡聚糖酶进行了cDNA克隆,并成功在大肠杆菌中表达。(Streptomyces sioyaensis) was successfully cloned and expressed in Escherichia coli endo-β-1,3-glucanase. Lan Haiyan et al. cloned the tobacco-derived β-1,3-glucanase cDNA and successfully expressed it in Escherichia coli.
发明内容Contents of the invention
本发明的目的是寻找一种新的β-1,3-葡聚糖酶及其编码基因,再利用基因扩增等手段克隆了该酶基因,最后在大肠杆菌中表达和制备该β-1,3-葡聚糖酶。The purpose of the present invention is to find a new β-1,3-glucanase and its coding gene, then clone the enzyme gene by means of gene amplification, and finally express and prepare the β-1 in Escherichia coli , 3-glucanase.
本发明提供了一种来源于粗糙脉孢菌中的β-1,3-葡聚糖酶基因序列及其相应的氨基酸序列。提供了含有粗糙脉孢菌的β-1,3-葡聚糖酶基因在大肠杆菌中表达的表达载体pET28a-glu及其基因重组菌EC-Glu。利用本发明成果,可以用于β-1,3-葡聚糖酶工业化生产的基因工程菌的构建及其规模化制备。The invention provides a β-1,3-glucanase gene sequence and its corresponding amino acid sequence derived from Neurospora crassa. The expression vector pET28a-glu containing the β-1,3-glucanase gene of Neurospora crassa expressed in Escherichia coli and its gene recombinant strain EC-Glu are provided. The achievements of the invention can be used for the construction and large-scale preparation of genetically engineered bacteria for the industrial production of β-1,3-glucanase.
本发明的技术方案:用BLAST软件,以内切β-1,3-葡聚糖酶的氨基酸序列搜索微生物基因组序列,粗糙脉胞菌基因组序列中的开放阅读框架B23B10.170编码产物可能是内切β-1,3-葡聚糖酶。从基因组序列中提取这段序列,采用GenScan软件分析发现此基因含有两个内含子,用SignalP V2.0程序分析这段基因的编码产物。确定其为分泌性蛋白并确定了信号肽的切割位点。在上述分析的基础上,设计引物P1,P2,以粗糙脉胞菌AS 3.1604的染色体DNA为模板,PCR扩增出2432bp不含编码信号肽序列的核苷酸片段gluA,PCR扩增条件为95℃5min;94℃30s,54℃50s,72℃2min 30s,35个循环;72℃10min;扩增得到目的片段gluA经EcoRI酶切与相同酶切的pUC18连接,获得重组质粒pUC-gluA。核苷酸序列测定确认获得内切β-1,3葡聚糖酶基因gluA,其中在第267碱基之后的61bp为第一个内含子,在第448碱基之后的34bp为第二个内含子。Technical scheme of the present invention: use BLAST software to search the microbial genome sequence with the amino acid sequence of endo-β-1,3-glucanase, and the open reading frame B23B10.170 coding product in the genome sequence of Neuromonas crassa may be an endo-β-1,3-glucanase. beta-1,3-glucanase. This sequence was extracted from the genome sequence, and the GenScan software was used to analyze that the gene contained two introns, and the SignalP V2.0 program was used to analyze the coding product of this gene. It was identified as a secreted protein and the cleavage site of the signal peptide was determined. On the basis of the above analysis, primers P1 and P2 were designed, using the chromosomal DNA of Neuromonas crassa AS 3.1604 as a template, PCR amplified 2432bp nucleotide fragment gluA without coding signal peptide sequence, PCR amplification conditions were 95 5 min at 94 °C, 50 s at 54 °C, 2 min at 72 °C for 30 s, 35 cycles; 10 min at 72 °C; the amplified target fragment gluA was digested with EcoRI and ligated with pUC18 digested with the same enzyme to obtain the recombinant plasmid pUC-gluA. Nucleotide sequence determination confirmed the acquisition of the endo-β-1,3 glucanase gene gluA, in which the 61bp after the 267th base is the first intron, and the 34bp after the 448th base is the second Intron.
采用PCR方法进行外显子拼接,去除目的基因中的两个内含子。首先设计引物P3、P4、P5和P6,其中P3和P4,P5和P6两对引物5’端分别有20个和23个碱基是互补的,以便于拼接。以pUC-gluA为模板,P1和P3,P4和P2为引物作PCR,分别扩增获得PCR产物P1P3和P4P2。获得产物P1P3的PCR扩增条件是95℃5min;94℃30s,54℃50s,72℃30s,35个循环;72℃10min;获得PCR产物P4P2的PCR扩增条件是95℃5min;94℃30s,54℃50s,72℃2min,35个循环;72℃10min。然后以P1P3和P4P2的混合物为模板,通过引物P1和P2进行PCR拼接,去除第一个内含子intr1。以所得去除第一个内含子后的产物为模板,再用P1,P2,P5和P6组合,重复上述过程相同条件进行PCR扩增,先获得产物P1P5和P6P2,再通过引物P1,P2进行PCR拼接,去除第二个内含子intr2,将去除内含子的glu克隆入pUC18,获得重组质粒pUC-glu并进行序列测定,确认内含子已正确去除。基因glu的核苷酸序列如下Exon splicing was performed by PCR method to remove two introns in the target gene. At first, primers P3, P4, P5 and P6 were designed, wherein P3 and P4, and 20 and 23 bases at the 5' ends of the two pairs of primers of P5 and P6 were complementary to facilitate splicing. Using pUC-gluA as template, P1 and P3, P4 and P2 as primers for PCR, PCR products P1P3 and P4P2 were amplified respectively. The PCR amplification conditions for obtaining the product P1P3 are 95°C for 5min; 94°C for 30s, 54°C for 50s, 72°C for 30s, 35 cycles; 72°C for 10min; the PCR amplification conditions for obtaining the PCR product P4P2 are 95°C for 5min; 94°C for 30s , 54°C for 50s, 72°C for 2min, 35 cycles; 72°C for 10min. Then, using the mixture of P1P3 and P4P2 as a template, PCR splicing was performed by primers P1 and P2 to remove the first intron intr1. Use the obtained product after removing the first intron as a template, then use P1, P2, P5 and P6 combination, repeat the above process and perform PCR amplification under the same conditions, first obtain products P1P5 and P6P2, and then use primers P1 and P2 to perform PCR amplification. PCR splicing, the second intron intr2 was removed, the intron-removed glu was cloned into pUC18, and the recombinant plasmid pUC-glu was obtained and sequenced to confirm that the intron had been correctly removed. The nucleotide sequence of the gene glu is as follows
atgtctccat tgctggacgt ctccgcttca gtctccttga actggaccag cgctcaaggt 60 atg tctccat tgctggacgt ctccgcttca gtctccttga actggaccag cgctcaaggt 60
gtttccgacc gaccgaccag gttttggtac tccagtatcg accacagcac tccccttgtg 120gtttccgacc gaccgaccag gttttggtac tccagtatcg accacagcac tccccttgtg 120
cgcggcttcg ctcccgacct tgacggagat gtcaactatg ccgtcttcaa ggcagtgaaa 180cgcggcttcg ctcccgacct tgacggagat gtcaactatg ccgtcttcaa ggcagtgaaa 180
cccggcgatg gggcgagtat ccaaacagcg atcaactcgg ggaccaacgg tgctaagaga 240cccggcgatg gggcgagtat ccaaacagcg atcaactcgg ggaccaacgg tgctaagaga 240
cacggtctat ggtttgcttc ccagccacga gttgtgtaca taccgccggg aacatacgag 300cacggtctat ggtttgcttc ccagccacga gttgtgtaca taccgccggg aacatacgag 300
atctctgaga ccatcttcat gaacactgac acagttctga tgggcgacgc aacagatgta 360atctctgaga ccatcttcat gaacactgac acagttctga tgggcgacgc aacagatgta 360
aggacgatgg cctctcccat gcaagcggaa ccacccatca tcaaagcatc ttcgaacttc 420aggacgatgg cctctcccat gcaagcggaa ccacccatca tcaaagcatc ttcgaacttc 420
tccgggaatc aaacgttgat ctctggccaa gaccccgcaa ctggtatttc cggtgagcta 480tccgggaatc aaacgttgat ctctggccaa gaccccgcaa ctggtatttc cggtgagcta 480
tcgttcgccg tctccttgaa gaacttaatc ctcgacacca ccaatatccc aggagaccaa 540tcgttcgccg tctccttgaa gaacttaatc ctcgacacca ccaatatccc aggagaccaa 540
gccttcacag ctctctggtg gggtgttgct caaggagctc agttgcagaa tgtgaagatc 600gccttcacag ctctctggtg gggtgttgct caaggagctc agttgcagaa tgtgaagatc 600
cgtatggcgc ctgccatcga tggtgaggga cacagtggta ttcgcctcgg ccgtggctcg 660cgtatggcgc ctgccatcga tggtgaggga cacagtggta ttcgcctcgg ccgtggctcg 660
actctcggag tttcggatgt tcgtatcgaa tacgggcaaa acggtatctg gtataacggc 720actctcggag tttcggatgt tcgtatcgaa tacgggcaaa acggtatctg gtataacggc 720
catcagcaag cagttttcaa gagcatctac ttcttcaaaa atgctgtggg aatgttcatt 780catcagcaag cagttttcaa gagcatctac ttcttcaaaa atgctgtggg aatgttcatt 780
gacggtggcg ccacgatcag catcgtcaac ccgacctttg acggctgtgg cttgggcgtc 840gacggtggcg ccacgatcag catcgtcaac ccgacctttg acggctgtgg cttgggcgtc 840
taccacgtcg cgggcaaccc ttggattggt ctaatcgatg ccatctctat caactccggt 900taccacgtcg cgggcaaccc ttggattggt ctaatcgatg ccatctctat caactccggt 900
acgacgctga agacgacaga ctggccaaac tacctggtcg agaaccttcg tgtcatcagc 960acgacgctga agacgacaga ctggccaaac tacctggtcg agaaccttcg tgtcatcagc 960
ggaaaaaccg agaacgcggt cgaagggccc ggcgactttg ttctggcaac caagccaaac 1020ggaaaaaccg agaacgcggt cgaagggccc ggcgactttg ttctggcaac caagccaaac 1020
gtagcccagc tctcgtacgc caacactgtt ggccatgatc ccatctatgg ccccattgaa 1080gtagcccagc tctcgtacgc caacactgtt ggccatgatc ccatctatgg ccccattgaa 1080
gcagcgcagt tgaaccgtcc atcatcgctg gcgcctggac ctgatgggcg ttatgcatac 1140gcagcgcagt tgaaccgtcc atcatcgctg gcgcctggac ctgatgggcg ttatgcatac 1140
cttccagcac cgaactatgc cgagctcagc gtccaagact ttctcaacgt caaagatcct 1200cttccagcac cgaactatgc cgagctcagc gtccaagact ttctcaacgt caaagatcct 1200
cttcagaacg gaggctgcct cgtctttggc gacaacaccc gagacgagtc ctccaccctc 1260cttcagaacg gaggctgcct cgtctttggc gacaacaccc gagacgagtc ctccaccctc 1260
aacgccatcc ttcgtctggc cgctcgtcag aacaagatcg cttactttcc cttcggcaag 1320aacgccatcc ttcgtctggc cgctcgtcag aacaagatcg cttactttcc cttcggcaag 1320
taccgcgtcg actcgactct tttcgttccc tccggctccc gtattgtcgg cgaagcgtgg 1380taccgcgtcg actcgactct tttcgttccc tccggctccc gtattgtcgg cgaagcgtgg 1380
gccacaatca cgggatatgg ccccttcttc acagacagcg ctcatcccca accgatcatc 1440gccacaatca cgggatatgg ccccttcttc acagacagcg ctcatcccca accgatcatc 1440
aaggtcggca accccggcga tattggcacc gcgcacatcc aggatatgcg cttcaccgta 1500aaggtcggca accccggcga tattggcacc gcgcacatcc aggatatgcg cttcaccgta 1500
tcggacgtgc ttcccggagc catcatcctg cagttcaacc tcgccggtgc gcagccgggg 1560tcggacgtgc ttcccggagc catcatcctg cagttcaacc tcgccggtgc gcagccgggg 1560
gacgtggcaa tctggaactc gcttgtcaca gtcggaggaa cgcggggtgc gaaggcgtta 1620gacgtggcaa tctggaactc gcttgtcaca gtcggaggaa cgcggggtgc gaaggcgtta 1620
acggacaagt gcgtcaatcc ggagacggac gaggcgtgca aggctgcttt cttgggtatc 1680acggacaagt gcgtcaatcc ggagacggac gaggcgtgca aggctgcttt cttgggtatc 1680
catctcgctt cgacgtcgtc cgtgtatctc gagaacgtat ggaactgggt agccgaccac 1740catctcgctt cgacgtcgtc cgtgtatctc gagaacgtat ggaactgggt agccgaccac 1740
atcgccgaag aaccgatatc gccgggcggg agcaacatcg ccggaaaggg cggagtgctc 1800atcgccgaag aaccgatatc gccgggcggg agcaacatcg ccggaaaggg cggagtgctc 1800
gtcgaagcga ccaaggggac ctggctgcac gcgctgggat cggagcactg gtggctgtac 1860gtcgaagcga ccaaggggac ctggctgcac gcgctgggat cggagcactg gtggctgtac 1860
cagcttaatc tgcgaaaggc gtcgaatgtg ttagtgacga tgttgcaaag cgagaccaac 1920cagcttaatc tgcgaaaggc gtcgaatgtg ttagtgacga tgttgcaaag cgagaccaac 1920
tatgaccagg gagacaacgc ggtgcaggtg gtgccgcatc cgtggacgcc ggacgtggag 1980tatgaccagg gagacaacgc ggtgcaggtg gtgccgcatc cgtggacgcc ggacgtggag 1980
ggatggggcg atccggactt tggctggtgc gcggggcagg cgaacgagaa gaggtgtcga 2040ggatggggcg atccggactt tggctggtgc gcggggcagg cgaacgagaa gaggtgtcga 2040
atggggttcg cgaactacat caatggcgga agcaacattc ggacctacgc cagtgcctcg 2100atggggttcg cgaactacat caatggcgga agcaacattc ggacctacgc cagtgcctcg 2100
tgggcgttct tcagcgggcc gggataccaa gggtgcgcgg ggcagtatca gtgccaacgg 2160tgggcgttct tcagcgggcc gggataccaa gggtgcgcgg ggcagtatca gtgccaacgg 2160
tatatgcatt gggtggagga gacaccggcc aatttgcagg cgtttgggtt gtgctcgaag 2220tatatgcatt gggtggagga gacaccggcc aatttgcagg cgtttgggtt gtgctcgaag 2220
gatacgtggg cgacgttgag gttggagaat ggaaccgaga ttgtcacgaa cgaggggttc 2280gatacgtggg cgacgttgag gttggagaat ggaaccgaga ttgtcacgaa cgaggggttc 2280
accgggtcgt ggtctgggtc gggaggcgat gtcggcaggt acactccgga ggcatcg tga 2340accggtcgt ggtctgggtc gggaggcgat gtcggcaggt acactccgga ggcatcg tga 2340
其中, atg为起始密码子, tga为终止密码子。Wherein, atg is a start codon, and tga is a stop codon.
根据以上核苷酸序列,β-1,3-葡聚糖酶的氨基酸序列如下:According to the above nucleotide sequence, the amino acid sequence of β-1,3-glucanase is as follows:
Met Ser Pro Leu Leu Asp Val Ser Ala Ser Val Ser Leu Asn TrpMet Ser Pro Leu Leu Asp Val Ser Ala Ser Val Ser Leu Asn Trp
1 5 10 151 5 10 15
Thr Ser Ala Gln Gly Val Ser Asp Arg Pro Thr Arg Phe Trp TyrThr Ser Ala Gln Gly Val Ser Asp Arg Pro Thr Arg Phe Trp Tyr
20 25 3020 25 30
Ser Ser Ile Asp His Ser Thr Pro Leu Val Arg Gly Phe Ala ProSer Ser Ile Asp His Ser Thr Pro Leu Val Arg Gly Phe Ala Pro
35 40 4535 40 45
Asp Leu Asp Gly Asp Val Asn Tyr Ala Val Phe Lys Ala Val LysAsp Leu Asp Gly Asp Val Asn Tyr Ala Val Phe Lys Ala Val Lys
50 55 6050 55 60
Pro Gly Asp Gly Ala Ser Ile Gln Thr Ala Ile Asn Ser Gly ThrPro Gly Asp Gly Ala Ser Ile Gln Thr Ala Ile Asn Ser Gly Thr
65 70 7565 70 75
Asn Gly Ala Lys Arg His Gly Leu Trp Phe Ala Ser Gln Pro ArgAsn Gly Ala Lys Arg His Gly Leu Trp Phe Ala Ser Gln Pro Arg
80 85 9080 85 90
Val Val Tyr Ile Pro Pro Gly Thr Tyr Glu Ile Ser Glu Thr IleVal Val Tyr Ile Pro Pro Gly Thr Tyr Glu Ile Ser Glu Thr Ile
95 100 10595 100 105
Phe Met Asn Thr Asp Thr Val Leu Met Gly Asp Ala Thr Asp ValPhe Met Asn Thr Asp Thr Val Leu Met Gly Asp Ala Thr Asp Val
110 115 120110 115 120
Arg Thr Met Ala Ser Pro Met Gln Ala Glu Pro Pro Ile Ile LysArg Thr Met Ala Ser Pro Met Gln Ala Glu Pro Pro Ile Ile Lys
125 130 135125 130 135
Ala Ser Ser Asn Phe Ser Gly Asn Gln Thr Leu Ile Ser Gly GlnAla Ser Ser Asn Phe Ser Gly Asn Gln Thr Leu Ile Ser Gly Gln
140 145 150140 145 150
Asp Pro Ala Thr Gly Ile Ser Gly Glu Leu Ser Phe Ala Val SerAsp Pro Ala Thr Gly Ile Ser Gly Glu Leu Ser Phe Ala Val Ser
155 160 165155 160 165
Leu Lys Asn Leu Ile Leu Asp Thr Thr Asn Ile Pro Gly Asp GlnLeu Lys Asn Leu Ile Leu Asp Thr Thr Asn Ile Pro Gly Asp Gln
170 175 180170 175 180
Ala Phe Thr Ala Leu Trp Trp Gly Val Ala Gln Gly Ala Gln LeuAla Phe Thr Ala Leu Trp Trp Gly Val Ala Gln Gly Ala Gln Leu
185 190 195185 190 195
Gln Asn Val Lys Ile Arg Met Ala Pro Ala Ile Asp Gly Glu GlyGln Asn Val Lys Ile Arg Met Ala Pro Ala Ile Asp Gly Glu Gly
200 205 210200 205 210
His Ser Gly Ile Arg Leu Gly Arg Gly Ser Thr Leu Gly Val SerHis Ser Gly Ile Arg Leu Gly Arg Gly Ser Thr Leu Gly Val Ser
215 220 225215 220 225
Asp Val Arg Ile Glu Tyr Gly Gln Asn Gly Ile Trp Tyr Asn GlyAsp Val Arg Ile Glu Tyr Gly Gln Asn Gly Ile Trp Tyr Asn Gly
230 235 240230 235 240
His Gln Gln Ala Val Phe Lys Ser Ile Tyr Phe Phe Lys Asn AlaHis Gln Gln Ala Val Phe Lys Ser Ile Tyr Phe Phe Lys Asn Ala
245 250 255245 250 255
Val Gly Met Phe Ile Asp Gly Gly Ala Thr Ile Ser Ile Val AsnVal Gly Met Phe Ile Asp Gly Gly Ala Thr Ile Ser Ile Val Asn
260 265 270260 265 270
Pro Thr Phe Asp Gly Cys Gly Leu Gly Val Tyr His Val Ala GlyPro Thr Phe Asp Gly Cys Gly Leu Gly Val Tyr His Val Ala Gly
275 280 285275 280 285
Asn Pro Trp Ile Gly Leu Ile Asp Ala Ile Ser Ile Asn Ser GlyAsn Pro Trp Ile Gly Leu Ile Asp Ala Ile Ser Ile Asn Ser Gly
290 295 300290 295 300
Thr Thr Leu Lys Thr Thr Asp Trp Pro Asn Tyr Leu Val Glu AsnThr Thr Leu Lys Thr Thr Asp Trp Pro Asn Tyr Leu Val Glu Asn
305 310 315305 310 315
Leu Arg Val Ile Ser Gly Lys Thr Glu Asn Ala Val Glu Gly ProLeu Arg Val Ile Ser Gly Lys Thr Glu Asn Ala Val Glu Gly Pro
320 325 330320 325 330
Gly Asp Phe Val Leu Ala Thr Lys Pro Asn Val Ala Gln Leu SerGly Asp Phe Val Leu Ala Thr Lys Pro Asn Val Ala Gln Leu Ser
335 340 345335 340 345
Tyr Ala Asn Thr Val Gly His Asp Pro Ile Tyr Gly Pro Ile GluTyr Ala Asn Thr Val Gly His Asp Pro Ile Tyr Gly Pro Ile Glu
350 355 360350 355 360
Ala Ala Gln Leu Asn Arg Pro Ser Ser Leu Ala Pro Gly Pro AspAla Ala Gln Leu Asn Arg Pro Ser Ser Leu Ala Pro Gly Pro Asp
365 370 375365 370 375
Gly Arg Tyr Ala Tyr Leu Pro Ala Pro Asn Tyr Ala Glu Leu SerGly Arg Tyr Ala Tyr Leu Pro Ala Pro Asn Tyr Ala Glu Leu Ser
380 385 390380 385 390
Val Gln Asp Phe Leu Asn Val Lys Asp Pro Leu Gln Asn Gly GlyVal Gln Asp Phe Leu Asn Val Lys Asp Pro Leu Gln Asn Gly Gly
395 400 405395 400 405
Cys Leu Val Phe Gly Asp Asn Thr Arg Asp Glu Ser Ser Thr LeuCys Leu Val Phe Gly Asp Asn Thr Arg Asp Glu Ser Ser Thr Leu
410 415 420410 415 420
Asn Ala Ile Leu Arg Leu Ala Ala Arg Gln Asn Lys Ile Ala TyrAsn Ala Ile Leu Arg Leu Ala Ala Arg Gln Asn Lys Ile Ala Tyr
425 430 435425 430 435
Phe Pro Phe Gly Lys Tyr Arg Val Asp Ser Thr Leu Phe Val ProPhe Pro Phe Gly Lys Tyr Arg Val Asp Ser Thr Leu Phe Val Pro
440 445 450440 445 450
Ser Gly Ser Arg Ile Val Gly Glu Ala Trp Ala Thr Ile Thr GlySer Gly Ser Arg Ile Val Gly Glu Ala Trp Ala Thr Ile Thr Gly
455 460 465455 460 465
Tyr Gly Pro Phe Phe Thr Asp Ser Ala His Pro Gln Pro Ile IleTyr Gly Pro Phe Phe Thr Asp Ser Ala His Pro Gln Pro Ile Ile
470 475 480470 475 480
Lys Val Gly Asn Pro Gly Asp Ile Gly Thr Ala His Ile Gln AspLys Val Gly Asn Pro Gly Asp Ile Gly Thr Ala His Ile Gln Asp
485 490 495485 490 495
Met Arg Phe Thr Val Ser Asp Val Leu Pro Gly Ala Ile Ile LeuMet Arg Phe Thr Val Ser Asp Val Leu Pro Gly Ala Ile Ile Leu
500 505 510500 505 510
Gln Phe Asn Leu Ala Gly Ala Gln Pro Gly Asp Val Ala Ile TrpGln Phe Asn Leu Ala Gly Ala Gln Pro Gly Asp Val Ala Ile Trp
515 520 525515 520 525
Asn Ser Leu Val Thr Val Gly Gly Thr Arg Gly Ala Lys Ala LeuAsn Ser Leu Val Thr Val Gly Gly Thr Arg Gly Ala Lys Ala Leu
530 535 540530 535 540
Thr Asp Lys Cys Val Asn Pro Glu Thr Asp Glu Ala Cys Lys AlaThr Asp Lys Cys Val Asn Pro Glu Thr Asp Glu Ala Cys Lys Ala
545 550 555545 550 555
Ala Phe Leu Gly Ile His Leu Ala Ser Thr Ser Ser Val Tyr LeuAla Phe Leu Gly Ile His Leu Ala Ser Thr Ser Ser Val Tyr Leu
560 565 570560 565 570
Glu Asn Val Trp Asn Trp Val Ala Asp His Ile Ala Glu Glu ProGlu Asn Val Trp Asn Trp Val Ala Asp His Ile Ala Glu Glu Pro
575 580 585575 580 585
Ile Ser Pro Gly Gly Ser Asn Ile Ala Gly Lys Gly Gly Val LeuIle Ser Pro Gly Gly Ser Asn Ile Ala Gly Lys Gly Gly Val Leu
590 595 600590 595 600
Val Glu Ala Thr Lys Gly Thr Trp Leu His Ala Leu Gly Ser GluVal Glu Ala Thr Lys Gly Thr Trp Leu His Ala Leu Gly Ser Glu
605 610 615605 610 615
His Trp Trp Leu Tyr Gln Leu Asn Leu Arg Lys Ala Ser Asn ValHis Trp Trp Leu Tyr Gln Leu Asn Leu Arg Lys Ala Ser Asn Val
620 625 630620 625 630
Leu Val Thr Met Leu Gln Ser Glu Thr Asn Tyr Asp Gln Gly AspLeu Val Thr Met Leu Gln Ser Glu Thr Asn Tyr Asp Gln Gly Asp
635 640 645635 640 645
Asn Ala Val Gln Val Val Pro His Pro Trp Thr Pro Asp Val GluAsn Ala Val Gln Val Val Pro His Pro Trp Thr Pro Asp Val Glu
650 655 660650 655 660
Gly Trp Gly Asp Pro Asp Phe Gly Trp Cys Ala Gly Gln Ala AsnGly Trp Gly Asp Pro Asp Phe Gly Trp Cys Ala Gly Gln Ala Asn
665 670 675665 670 675
Glu Lys Arg Cys Arg Met Gly Phe Ala Asn Tyr Ile Asn Gly GlyGlu Lys Arg Cys Arg Met Gly Phe Ala Asn Tyr Ile Asn Gly Gly
680 685 690680 685 690
Ser Asn Ile Arg Thr Tyr Ala Ser Ala Ser Trp Ala Phe Phe SerSer Asn Ile Arg Thr Tyr Ala Ser Ala Ser Trp Ala Phe Phe Ser
695 700 705695 700 705
Gly Pro Gly Tyr Gln Gly Cys Ala Gly Gln Tyr Gln Cys Gln ArgGly Pro Gly Tyr Gln Gly Cys Ala Gly Gln Tyr Gln Cys Gln Arg
710 715 720710 715 720
Tyr Met His Trp Val Glu Glu Thr Pro Ala Asn Leu Gln Ala PheTyr Met His Trp Val Glu Glu Thr Pro Ala Asn Leu Gln Ala Phe
725 730 735725 730 735
Gly Leu Cys Ser Lys Asp Thr Trp Ala Thr Leu Arg Leu Glu AsnGly Leu Cys Ser Lys Asp Thr Trp Ala Thr Leu Arg Leu Glu Asn
740 745 750740 745 750
Gly Thr Glu Ile Val Thr Asn Glu Gly Phe Thr Gly Ser Trp SerGly Thr Glu Ile Val Thr Asn Glu Gly Phe Thr Gly Ser Trp Ser
755 760 765755 760 765
Gly Ser Gly Gly Asp Val Gly Arg Tyr Thr Pro Glu Ala SerGly Ser Gly Gly Asp Val Gly Arg Tyr Thr Pro Glu Ala Ser
770 775 779770 775 779
该β-甘露聚糖酶由779个氨基酸残基组成。This β-mannanase consists of 779 amino acid residues.
用EcoRI酶切重组质粒pUC-glu,胶回收获得基因glu片段,将基因glu克隆入质粒pET28a的EcoRI位点,得到基因glu顺向插入的重组质粒pET28a-glu。重组质粒pET28a-glu转化大肠杆菌DE3(RILplus),获得基因重组菌EC-Glu。The recombinant plasmid pUC-glu was digested with EcoRI, and the gene glu fragment was obtained by gel recovery. The gene glu was cloned into the EcoRI site of the plasmid pET28a to obtain the recombinant plasmid pET28a-glu in which the gene glu was inserted forward. The recombinant plasmid pET28a-glu was transformed into Escherichia coli DE3 (RILplus), and the gene recombinant strain EC-Glu was obtained.
本发明的有益效果:本发明提供了来源于粗糙脉孢菌(Neurospora crassa)AS 3.1604的一种内切β-1,3葡聚糖酶基因glu,提供了基因glu的核苷酸序列和相应蛋白质的氨基酸序列,提供了含有基因glu的大肠杆菌表达载体pET28a-glu以及在大肠杆菌中的高效表达。本发明可用于内切β-1,3葡聚糖酶工业化生产的基因工程菌的构建,提高微生物发酵法生产内切β-1,3葡聚糖酶的水平和质量。Beneficial effects of the present invention: the present invention provides a kind of endo-beta-1,3 glucanase gene glu derived from Neurospora crassa (Neurospora crassa) AS 3.1604, provides the nucleotide sequence of gene glu and corresponding The amino acid sequence of the protein provides the Escherichia coli expression vector pET28a-glu containing the gene glu and its high expression in Escherichia coli. The invention can be used for the construction of genetically engineered bacteria for the industrial production of endo-β-1,3 glucanase, and improves the level and quality of endo-β-1,3-glucanase produced by microbial fermentation.
附图说明Description of drawings
图1拼接法去除内含子的过程。P1-P6为引物,P1P3,P4P2,P1P5和P6P2是相对应的PCR扩增产物。Figure 1 The process of splicing to remove introns. P1-P6 are primers, and P1P3, P4P2, P1P5 and P6P2 are corresponding PCR amplification products.
图2重组表达质粒pET28a-glu的物理图谱。Fig. 2 Physical map of recombinant expression plasmid pET28a-glu.
图3重组菌表达β-1,3-葡聚糖酶的SDS-PAGE分析。1.蛋白质分子量标准;2.空载体对照;3.EC-Glu。Figure 3 SDS-PAGE analysis of recombinant bacteria expressing β-1,3-glucanase. 1. Protein molecular weight standard; 2. Empty vector control; 3. EC-Glu.
具体实施方式Detailed ways
实施例1内切β-1,3葡聚糖酶基因glu的克隆和改造Example 1 Cloning and transformation of endo-β-1,3 glucanase gene glu
P1 accggaattcatgtctccattgctggacgtP1 accggaattcatgtctccattgctggacgt
P2 cgtgaattcacgatgcctccggagtgtP2 cgtgaattcacgatgcctccggagtgt
P3 cccggcggtatgtacacaactcgtggctgggaagcaaaccP3 cccggcggtatgtacacaactcgtggctgggaagcaaacc
P4 gttgtgtacataccgccgggaacatP4 gttgtgtacataccgccgggaacat
P5 gatgctttgatgatgggtggttccgcttgcatgggagaggP5 gatgctttgatgatgggtggttccgcttgcatgggagg
P6 ccacccatcatcaaagcatctcgP6 ccacccatcatcaaagcatctcg
用BLAST软件,以内切β-1,3-葡聚糖酶的氨基酸序列搜索微生物基因组序列,粗糙脉胞菌基因组序列中的开放阅读框架B23B10.170编码产物可能是内切β-1,3-葡聚糖酶。从基因组序列中提取这段序列,采用GenScan软件分析发现此基因含有两个内含子,用Signa1PV2.0程序分析这段基因的编码产物。确定其为分泌性蛋白并确定了信号肽的切割位点。在上述分析的基础上,设计引物P1,P2,以粗糙脉胞菌AS3.1604的染色体DNA为模板,PCR扩增出2432bp不含编码信号肽序列的核苷酸片段gluA,PCR扩增条件为95℃5min;94℃30s,54℃50s,72℃2min 30s,35个循环;72℃10min;扩增得到目的片段gluA经EcoRI酶切与相同酶切的pUC18连接,获得重组质粒pUC-gluA。核苷酸序列测定确认获得内切β-1,3葡聚糖酶的基因gluA,其中在第267碱基之后的61bp为第一个内含子,在第448碱基之后的34bp为第二个内含子。采用PCR方法进行外显子拼接,去除目的基因中的两个内含子(图1)。首先设计引物P3、P4、P5和P6,其中P3和P4,P5和P6两对引物5’端分别有20和23个碱基是互补的,以便于拼接。以pUC-gluA为模板,P1和P3,P4和P2为引物作PCR,分别扩增获得PCR产物P1P3和P4P2。获得产物P1P3的PCR扩增条件是95℃5min;94℃30s,54℃50s,72℃30s,35个循环;72℃10min;获得PCR产物P4P2的PCR扩增条件是95℃5min;94℃30s,54℃50s,72℃2min,35个循环;72℃10min。以所得去除第一个内含子后的产物为模板,再用P1,P2,P5和P6适当组合,重复上述过程相同条件进行PCR扩增,先获得产物P1P5和P6P2,再通过引物P1,P2进行PCR拼接,去除第二个内含子,将去除内含子的glu克隆入pUC18,获得重组质粒pUC-glu并进行序列测定,确认内含子已正确去除。Use BLAST software to search the microbial genome sequence with the amino acid sequence of the endo-β-1,3-glucanase. The open reading frame B23B10.170 coding product in the genome sequence of Neuromonas crassa may be the endo-β-1,3- Glucanase. This sequence was extracted from the genome sequence, and the GenScan software was used to analyze that the gene contained two introns, and the coded product of this gene was analyzed by the program Signa1PV2.0. It was identified as a secreted protein and the cleavage site of the signal peptide was determined. On the basis of the above analysis, primers P1 and P2 were designed, and the chromosomal DNA of Neuromonas crassa AS3.1604 was used as a template to amplify a 2432bp nucleotide fragment gluA without coding signal peptide sequence by PCR. The PCR amplification conditions were as follows: 95°C for 5 min; 94°C for 30 s, 54°C for 50 s, 72°C for 2 min for 30 s, 35 cycles; 72°C for 10 min; the amplified target fragment gluA was digested with EcoRI and ligated with pUC18 digested with the same enzyme to obtain the recombinant plasmid pUC-gluA. Nucleotide sequence determination confirmed the endo-β-1,3 glucanase gene gluA, in which the 61bp after the 267th base is the first intron, and the 34bp after the 448th base is the second introns. Exon splicing was performed by PCR method to remove two introns in the target gene (Figure 1). At first, primers P3, P4, P5 and P6 were designed, wherein P3 and P4, and 20 and 23 bases at the 5' ends of the two pairs of primers of P5 and P6 were complementary, so as to facilitate splicing. Using pUC-gluA as template, P1 and P3, P4 and P2 as primers for PCR, PCR products P1P3 and P4P2 were amplified respectively. The PCR amplification conditions for obtaining the product P1P3 are 95°C for 5min; 94°C for 30s, 54°C for 50s, 72°C for 30s, 35 cycles; 72°C for 10min; the PCR amplification conditions for obtaining the PCR product P4P2 are 95°C for 5min; 94°C for 30s , 54°C for 50s, 72°C for 2min, 35 cycles; 72°C for 10min. Use the obtained product after removing the first intron as a template, then use appropriate combinations of P1, P2, P5 and P6, repeat the above process and perform PCR amplification under the same conditions, first obtain products P1P5 and P6P2, and then use primers P1, P2 Perform PCR splicing, remove the second intron, clone the intron-removed glu into pUC18, obtain the recombinant plasmid pUC-glu and perform sequence determination to confirm that the intron has been correctly removed.
实施例2内切β-1,3葡聚糖酶基因glu的表达Example 2 Expression of endo-β-1,3-glucanase gene glu
用EcoRI酶切重组质粒pUC-glu,胶回收获得基因glu片段,将基因glu克隆入质粒pET28a的EcoRI位点,得到基因glu顺向插入的重组质粒pET28a-glu(图2)。重组质粒pET28a-glu转化大肠杆菌DE3(RILplus),获得基因重组菌EC-Glu。重组菌EC-Glu接种于35mL LB培养基中,于37℃,200r/min振荡培养至OD值0.6左右,加入终浓度0.5mmol/L异丙基-β-D-半乳糖苷诱导培养4h。离心收集菌体,加入终浓度为12.5μg/mL溶菌酶进行细胞破碎,得到内切β-1,3葡聚糖酶粗酶液。用SDS-PAGE法检测表达产物(图3),重组菌EC-Glu在80kD处表达出明显的蛋白条带。重组β-1,3葡聚糖酶在45-55℃下表现出最佳的液化大麦葡聚糖的能力。The recombinant plasmid pUC-glu was digested with EcoRI, and the gene glu fragment was obtained by gel recovery. The gene glu was cloned into the EcoRI site of the plasmid pET28a to obtain the recombinant plasmid pET28a-glu with the gene glu inserted forward (Figure 2). The recombinant plasmid pET28a-glu was transformed into Escherichia coli DE3 (RILplus), and the gene recombinant strain EC-Glu was obtained. The recombinant strain EC-Glu was inoculated in 35mL LB medium, cultured at 37°C with shaking at 200r/min until the OD value was about 0.6, and induced by adding a final concentration of 0.5mmol/L isopropyl-β-D-galactoside for 4h. The cells were collected by centrifugation, and the cells were disrupted by adding lysozyme at a final concentration of 12.5 μg/mL to obtain a crude enzyme solution of endo-β-1,3 glucanase. The expression product was detected by SDS-PAGE (Fig. 3), and the recombinant strain EC-Glu expressed an obvious protein band at 80kD. Recombinant beta-1,3 glucanase exhibited the best ability to liquefy barley glucan at 45-55°C.
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| CN102168059A (en) * | 2011-01-06 | 2011-08-31 | 江苏锐阳生物科技有限公司 | Method for efficiently preparing beta-glucanase |
| CN105831428A (en) * | 2005-12-15 | 2016-08-10 | 美国礼来公司 | Enzymes for reduced immunological stress |
| CN117625507A (en) * | 2023-11-30 | 2024-03-01 | 江南大学 | Rhizobia genetic engineering modification and double-stage fermentation method for high-yield soluble beta-1, 3-glucan |
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| CN105831428A (en) * | 2005-12-15 | 2016-08-10 | 美国礼来公司 | Enzymes for reduced immunological stress |
| CN105831428B (en) * | 2005-12-15 | 2020-12-01 | 伊兰科美国公司 | Enzymes for reducing immune stress |
| CN102168059A (en) * | 2011-01-06 | 2011-08-31 | 江苏锐阳生物科技有限公司 | Method for efficiently preparing beta-glucanase |
| CN117625507A (en) * | 2023-11-30 | 2024-03-01 | 江南大学 | Rhizobia genetic engineering modification and double-stage fermentation method for high-yield soluble beta-1, 3-glucan |
| CN117625507B (en) * | 2023-11-30 | 2024-09-17 | 江南大学 | Rhizobia genetic engineering modification and double-stage fermentation method for high-yield soluble beta-1, 3-glucan |
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