CN1238501C - Novel externally tangent-beta-1,4-glucanase/internally tangent-beta-1,4-xylanase and application thereof - Google Patents
Novel externally tangent-beta-1,4-glucanase/internally tangent-beta-1,4-xylanase and application thereof Download PDFInfo
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- CN1238501C CN1238501C CNB021372837A CN02137283A CN1238501C CN 1238501 C CN1238501 C CN 1238501C CN B021372837 A CNB021372837 A CN B021372837A CN 02137283 A CN02137283 A CN 02137283A CN 1238501 C CN1238501 C CN 1238501C
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- glucanase
- endo
- exo
- xylanase
- enzyme
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Abstract
本发明提供了一种新的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶、编码该酶的多核苷酸和经DNA重组技术产生这种酶的方法。本发明还公开了含该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的载体和宿主细胞,及其在生产简单糖和葡萄糖方面的用途。The present invention provides a new exo-beta-1,4-glucanase/endo-beta-1,4-xylanase, a polynucleotide encoding the enzyme and the production of the enzyme by DNA recombination technology an enzymatic method. The present invention also discloses the carrier and host cell containing the exo-β-1,4-glucanase/endo-β-1,4-xylanase, and its effect on the production of simple sugars and glucose use.
Description
技术领域technical field
本发明涉及生物领域。更具体地,本发明涉及一种新的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶、编码该酶的多核苷酸和经DNA重组技术产生这种酶的方法。本发明还涉及含该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的载体和宿主细胞及其在生产简单糖和葡萄糖方面的用途。The present invention relates to the field of biology. More specifically, the present invention relates to a novel exo-β-1,4-glucanase/endo-β-1,4-xylanase, a polynucleotide encoding the enzyme, and Techniques for producing such enzymes. The present invention also relates to vectors and host cells containing the exo-β-1,4-glucanase/endo-β-1,4-xylanase and its use in the production of simple sugars and glucose.
背景技术Background technique
纤维素是自然界最丰富的可再生的能源。将未经任何化学处理的纤维素生物转化成简单糖或葡萄糖,作为发酵碳源生产酒精,是最理想和有效利用天然纤维素资源的方法之一。Cellulose is nature's most abundant renewable energy source. Bioconverting cellulose without any chemical treatment into simple sugar or glucose as a fermentative carbon source to produce ethanol is one of the most ideal and effective methods for utilizing natural cellulose resources.
通常认为,生物转化纤维素生成葡萄糖至少需要三种不同的酶的协同作用:(1)葡聚糖内切酶(Endo-1,4-β-D-glucanase,E.C.3.2.1.4,也称之为纤维素内切酶)。它作用于纤维素的非结晶区,随机水解β-1,4-糖苷键生成带非还原端的较短的寡聚糖,(2)葡聚糖外切酶(Exo-1,4-β-D-glucanase,E.C.3.2.1.91),它作用于纤维素分子的非还原末端水解β-1,4-糖苷键产生纤维二糖,(3)β-葡萄糖苷酶(β-D-glucosidase,E.C.3.2.1.21),它将纤维二糖水解为葡萄糖。It is generally believed that the biotransformation of cellulose to produce glucose requires the synergy of at least three different enzymes: (1) endoglucanase (Endo-1, 4-β-D-glucanase, E.C.3.2.1.4, also known as for endocellulase). It acts on the non-crystalline region of cellulose, randomly hydrolyzes β-1,4-glycosidic bonds to generate shorter oligosaccharides with non-reducing ends, (2) exoglucanase (Exo-1,4-β- D-glucanase, E.C.3.2.1.91), it acts on the non-reducing end of the cellulose molecule to hydrolyze the β-1,4-glucosidic bond to produce cellobiose, (3) β-glucosidase (β-D-glucosidase, E.C. 3.2.1.21), which hydrolyzes cellobiose to glucose.
目前,研究较为集中的是真菌和细菌的纤维素酶系。丝状真菌中的李氏木霉(T.reesei)和绿色木霉(T.viride)以及热纤梭菌(C.thermocellum)和cellulomonas fimi等物种的纤维素酶系较复杂,有多种亚类的内切酶,外切酶及葡萄糖苷酶[ThomasM.Wood,Biochemical.SocietyTransactions.1992,20,46-53],例如绿色木霉有6种亚型的内切酶[Beldman,G.et al Eur.J.Biochem.1985,146:301-308]。热纤梭菌的纤维素酶需要同多个蛋白质形成分子量巨大的纤维体(Cellulosome)才能起催化反应[Felix C.R and L.G.Ljiungdahl,Annu.Rev.Microbiol.1993,47:791-819],显然这样复杂的酶系必然会给研究和应用带来极大的困难。另一方面,纯化的单一组分的内切酶和外切酶要么不能水解未经化学处理的天然纤维素生成简单糖,要么水解活力极低,如李氏木霉(T.reesei)的纤维素酶系统中至少需14类纤维素酶的协同作用才能水解将未经化学处理的植物纤维。At present, the research is more concentrated on the cellulase system of fungi and bacteria. The cellulase systems of species such as Trichoderma reesei (T.reesei) and Trichoderma viride (T.viride), Clostridium thermocellum (C.thermocellum) and cellulomonas fimi in filamentous fungi are relatively complex, with a variety of sub Class endonuclease, exonuclease and glucosidase [ThomasM.Wood, Biochemical.SocietyTransactions.1992,20,46-53], for example Trichoderma viride has 6 subtypes of endonuclease [Beldman, G.et al Eur. J. Biochem. 1985, 146: 301-308]. The cellulase of Clostridium thermocellum needs to form a large molecular weight fiber body (Cellulosome) with multiple proteins to perform the catalytic reaction [Felix C.R and L.G.Ljiungdahl, Annu.Rev.Microbiol.1993, 47:791-819], obviously Complex enzyme systems will inevitably bring great difficulties to research and application. On the other hand, purified single-component endo- and exo-enzymes either cannot hydrolyze untreated natural cellulose to produce simple sugars, or have very low hydrolytic activity, such as the fiber of Trichoderma reesei (T.reesei) The synergistic action of at least 14 types of cellulase is needed in the enzyme system to hydrolyze the untreated plant fiber.
传统的观点认为动物没有自己的纤维素酶系,需依赖共生菌的纤维素酶将纤维素水解成单糖,供生命活动需要。但是90年代末发现了白蚁和小龙虾内在的纤维素内切酶[Hirofumi,W.Gaku,T,nathan,L Nature,1998,394:330-331;Keren A.B.et al.,Gene,1999,239,317-324]。此外,在拟南芥中也发现了12种内切酶基因[del Compillo,Curr.Top.Dev.Boil.1999,46:39-61]。动物纤维素酶可能成为新的应用研究的热点。The traditional view is that animals do not have their own cellulase system, and need to rely on the cellulase of symbiotic bacteria to hydrolyze cellulose into simple sugars for the needs of life activities. However, in the late 1990s, endocellulase in termites and crayfish was discovered [Hirofumi, W.Gaku, T, nathan, L Nature, 1998, 394: 330-331; Keren A.B. et al., Gene, 1999, 239 , 317-324]. In addition, 12 endonuclease genes were also found in Arabidopsis [del Compillo, Curr. Top. Dev. Boil. 1999, 46: 39-61]. Animal cellulase may become a hotspot of new applied research.
在地球上每年由固定CO2的光合作用就能形成100亿吨以是上的干植物物质,其中这些物质的组成一半以上是由纤维素,其次是半纤维素(主要由木聚糖所构成)。如果再加上人类活动所造成的废弃的纤维素,如稻草,麦秸等,其存在量则要以天文数字来计算。如何采用生物技术综合利用植物干物质或废弃的纤维素的问题上,纤维素酶和木聚糖酶(半纤维素酶)起着关键作用。有效地将这些天然的纤维素转化为简单糖是纤维素作为再生能源的关键。目前的纤维素酶还远不能适应将植物纤维素转化为简单糖作为再生能源的需求。因此,本领域迫切需要开发不同来源的具有能高效率水解纤维素的新的纤维素酶,以及新的生产葡萄糖的工艺。On the earth, more than 10 billion tons of dry plant matter can be formed by photosynthesis of fixed CO2 every year, and more than half of these materials are composed of cellulose, followed by hemicellulose (mainly composed of xylan) ). If we add the discarded cellulose caused by human activities, such as rice straw, wheat straw, etc., the amount of its existence will be calculated in astronomical figures. Cellulase and xylanase (hemicellulase) play a key role in how to comprehensively utilize plant dry matter or waste cellulose by biotechnology. Efficiently converting these native celluloses into simple sugars is key to the use of cellulose as a renewable energy source. Current cellulase enzymes are far from meeting the needs of converting plant cellulose into simple sugars as renewable energy sources. Therefore, there is an urgent need in this field to develop new cellulase enzymes from different sources that can hydrolyze cellulose with high efficiency, and a new process for producing glucose.
发明内容Contents of the invention
本发明的目的就是提供一种新的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶以及其片段、类似物和衍生物,及其编码序列。The purpose of the present invention is to provide a new exo-beta-1,4-glucanase/endo-beta-1,4-xylanase and its fragments, analogs and derivatives, and its coding sequence.
本发明的另一目的是提供生产外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的方法以及其用途。Another object of the present invention is to provide a method for producing exo-β-1,4-glucanase/endo-β-1,4-xylanase and its use.
本发明的另一目的是提供新的生产简单糖和葡萄糖的工艺。Another object of the present invention is to provide a new process for the production of simple sugars and glucose.
在本发明的第一方面,提供了新颖的分离出的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶,它包含:具有SEQ ID NO:2氨基酸序列的多肽、或其保守性变异多肽、或其活性片段、或其活性衍生物。较佳地,该酶选自下组:(a)具有SEQ ID NO:2氨基酸序列的多肽;(b)将SEQ ID NO:2氨基酸序列经过一个或多个氨基酸残基的取代、缺失或添加而形成的,且具有葡聚糖外切和/或木聚糖内切功能的由(a)衍生的多肽。In a first aspect of the present invention, there is provided a novel isolated exo-β-1,4-glucanase/endo-β-1,4-xylanase comprising: having SEQ ID NO : a polypeptide of 2 amino acid sequences, or a conservative variant polypeptide thereof, or an active fragment thereof, or an active derivative thereof. Preferably, the enzyme is selected from the group consisting of: (a) a polypeptide having the amino acid sequence of SEQ ID NO: 2; (b) the amino acid sequence of SEQ ID NO: 2 undergoes substitution, deletion or addition of one or more amino acid residues The polypeptide derived from (a) formed and having exoglucan and/or endo-xylan functions.
在本发明的第二方面,提供编码分离的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多核苷酸,该多核苷酸包含一核苷酸序列,该核苷酸序列与选自下组的一种核苷酸序列有至少70%相同性:(a)编码上述外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多核苷酸;和(b)与多核苷酸(a)互补的多核苷酸。较佳地,该多核苷酸编码具有SEQ ID NO:2所示氨基酸序列的多肽。更佳地,该多核苷酸的序列是选自下组的一种:具有SEQ ID NO:1中77-1261位的序列;具有SEQ IDNO:1中1-1293位的序列。In a second aspect of the present invention there is provided a polynucleotide encoding an isolated exo-β-1,4-glucanase/endo-β-1,4-xylanase comprising a A nucleotide sequence having at least 70% identity to a nucleotide sequence selected from the group consisting of: (a) encoding the aforementioned exo-β-1,4-glucanase/endo - a polynucleotide of beta-1,4-xylanase; and (b) a polynucleotide complementary to polynucleotide (a). Preferably, the polynucleotide encodes a polypeptide having the amino acid sequence shown in SEQ ID NO:2. More preferably, the sequence of the polynucleotide is one selected from the following group: having the sequence of 77-1261 in SEQ ID NO: 1; having the sequence of 1-1293 in SEQ ID NO: 1.
在本发明的第三方面,提供了含有上述多核苷酸的载体,以及被该载体转化或转导的宿主细胞或者被上述多核苷酸直接转化或转导的宿主细胞。In the third aspect of the present invention, there are provided vectors containing the above-mentioned polynucleotides, and host cells transformed or transduced by the vectors or host cells directly transformed or transduced by the above-mentioned polynucleotides.
在本发明的第四方面,提供了外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的制备方法,该方法包含:(a)在适合表达该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的条件下,培养上述被转化或转导的宿主细胞;(b)从培养物中分离出该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。In a fourth aspect of the present invention, a method for preparing exo-β-1,4-glucanase/endo-β-1,4-xylanase is provided, the method comprising: (a) suitable for Under the condition of expressing the exo-β-1,4-glucanase/endo-β-1,4-xylanase, cultivate the above-mentioned transformed or transduced host cells; (b) from the culture The exo-β-1,4-glucanase/endo-β-1,4-xylanase was isolated from
在本发明的第五方面,提供了本发明外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶、其编码序列、载体或宿主细胞的用途,它们可用于生产简单糖和葡萄糖,尤其是利用如稻草等植物干物质为原料。In the fifth aspect of the present invention, the use of exo-β-1,4-glucanase/endo-β-1,4-xylanase, its coding sequence, vector or host cell of the present invention is provided , they can be used for the production of simple sugars and glucose, especially from plant dry matter such as straw.
在本发明的第六方面,提供了一种新的生产葡萄糖的工艺,包括步骤:(a)用本发明上述的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶或转化或转导的宿主细胞处理纤维素材料,从而产生简单糖;(b)分离出所述的简单糖。较佳地,所述的纤维素材料是未经任何化学预处理的纤维素材料。In the sixth aspect of the present invention, a new process for producing glucose is provided, comprising the steps of: (a) using the above-mentioned exo-β-1,4-glucanase/endo-β-1 of the present invention , 4-xylanase or transformed or transduced host cells process the cellulosic material, thereby producing simple sugars; (b) isolating said simple sugars. Preferably, said cellulosic material is cellulosic material without any chemical pretreatment.
本发明的其它方面由于本文的技术的公开,对本领域的技术人员而言是显而易见的。Other aspects of the invention will be apparent to those skilled in the art from the technical disclosure herein.
附图说明Description of drawings
图1是内切-Glu C蛋白水解酶水解福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶所生成的水解肽片段的SDS-聚丙烯酰胺凝胶电泳(SDS-PAGE)图谱。Figure 1 is the SDS-polymerization of the hydrolyzed peptide fragments generated by endo-Glu C proteolytic enzyme hydrolysis of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase Acrylamide gel electrophoresis (SDS-PAGE) pattern.
图2显示了转入福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶cDNA序列的宿主细胞具有水解木聚糖的活性。Figure 2 shows that the host cells transformed with the apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase cDNA sequence have the activity of hydrolyzing xylan.
图3显示了氯离子对福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶[外切-β-1,4-葡聚糖酶]活性的影响。Figure 3 shows the effect of chloride ion on apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase [exo-β-1,4-glucanase] effect on activity.
具体实施方式Detailed ways
本发明人经过广泛而深入的研究,首次从从福寿螺(AmpullariumCrossean)中得到能有效水解未经过任何化学处理的稻草产生简单糖的纤维素酶系,分离出了纤维素外切酶和内切酶及β-葡萄糖苷酶。其中,一种分离的福寿螺纤维素外切酶还具有聚木糖水解酶(半纤维素酶)活力,即是一种酶具有两种酶活力的双功能酶,依据酶分类学的原则,该酶应属第10糖苷水解酶家族(family 10)。因此可称该酶为外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶(exo-β-1,4-glucanase/endo-β-1,4-xylanase),该酶的外切酶的活力不受高浓度产物抑制,SDS-PAGE均一的该双功能酶能水解稻草生成简单糖,同时还具有高比活的半纤维素酶的活性,是目前发现活力最高的半纤维素酶之一。在此基础上完成了本发明。After extensive and in-depth research, the inventors first obtained a cellulase system from Ampullarium Crossean that can effectively hydrolyze rice straw that has not undergone any chemical treatment to produce simple sugars, and isolated exo-cellulase and endo-cellulase and β-glucosidase. Wherein, a kind of isolated apple snail exocellulase also has xylohydrolase (hemicellulase) activity, that is, a bifunctional enzyme with two kinds of enzymatic activities. According to the principle of enzyme taxonomy, the The enzyme should belong to the 10th glycoside hydrolase family (family 10). Therefore, the enzyme can be called exo-β-1,4-glucanase/endo-β-1,4-xylanase (exo-β-1,4-glucanase/endo-β-1, 4-xylanase), the exonuclease activity of this enzyme is not inhibited by high-concentration products, the bifunctional enzyme with uniform SDS-PAGE can hydrolyze rice straw to generate simple sugars, and also has the activity of hemicellulase with high specific activity, It is one of the most active hemicellulases found so far. The present invention has been accomplished on this basis.
在本发明中,术语“福寿螺纤维素外切酶”“福寿螺葡聚糖外切酶”“福寿螺外切-1,4-β-D-葡聚糖外切酶”,或“外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶”可互换使用,都指具有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶氨基酸序列(SEQ ID NO:2)的蛋白或多肽。它们包括含有或不含起始甲硫氨酸的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。这里内切-β-1,4-木聚糖酶也可称之为半纤维素酶。In the present invention, the terms "Piaphylla exocellulase", "Piaphylla exoglucanase", "Piaphylla exo-1,4-β-D-glucanase", or "Exo-β -1,4-glucanase/endo-β-1,4-xylanase"are used interchangeably, both refer to -1,4-xylanase amino acid sequence (SEQ ID NO: 2) protein or polypeptide. They include exo-beta-1,4-glucanases/endo-beta-1,4-xylanases with or without an initial methionine. Here endo-β-1,4-xylanase may also be referred to as hemicellulase.
如本文所用,“分离的”是指物质从其原始环境中分离出来(如果是天然的物质,原始环境即是天然环境)。如活体细胞内的天然状态下的多聚核苷酸和多肽是没有分离纯化的,但同样的多聚核苷酸或多肽如从天然状态中同存在的其他物质中分开,则为分离纯化的。As used herein, "isolated" means that the material is separated from its original environment (if the material is native, the original environment is the natural environment). For example, polynucleotides and polypeptides in the natural state in living cells are not isolated and purified, but the same polynucleotides or polypeptides are isolated and purified if they are separated from other substances that exist together in the natural state .
如本文所用,“分离的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶蛋白或多肽”是指外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基本上不含天然与其相关的其它蛋白、脂类、糖类或其它物质。本领域的技术人员能用标准的蛋白质纯化技术纯化该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。基本上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一的带。As used herein, "isolated exo-β-1,4-glucanase/endo-β-1,4-xylanase protein or polypeptide" refers to exo-β-1,4-glucanase Glycanases/endo-beta-1,4-xylanases are substantially free of other proteins, lipids, carbohydrates or other substances with which they are naturally associated. Those skilled in the art can purify the exo-β-1,4-glucanase/endo-β-1,4-xylanase using standard protein purification techniques. Substantially pure polypeptides yield a single band on non-reducing polyacrylamide gels.
本发明的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶可以是重组的、天然的、合成的,优选是重组的。本发明的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶可以是天然纯化的产物,或是化学合成的产物,或使用重组技术从原核或真核宿主(例如,细菌、酵母、高等植物、昆虫和哺乳动物细胞)中产生。根据重组生产方案所用的宿主,本发明的多肽可以是糖基化的,或可以是非糖基化的。本发明的多肽还可包括或不包括起始的甲硫氨酸残基。The exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention may be recombinant, natural, synthetic, preferably recombinant. The exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention may be a natural purified product, or a chemically synthesized product, or obtained from prokaryotic Or produced in eukaryotic hosts (eg, bacteria, yeast, higher plants, insect and mammalian cells). Depending on the host used in the recombinant production protocol, the polypeptides of the invention may be glycosylated, or may be non-glycosylated. Polypeptides of the invention may or may not include an initial methionine residue.
本发明还包括该外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的片段、衍生物和类似物。如本文所用,术语“片段”、“衍生物”和“类似物”是指基本上保持本发明的天然外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶相同的生物学功能或活性的多肽。本发明的多肽片段、衍生物或类似物可以是(i)有一个或多个保守或非保守性氨基酸残基(优选保守性氨基酸残基)被取代的多肽,而这样的取代的氨基酸残基可以是也可以不是由遗传密码编码的,或(ii)在一个或多个氨基酸残基中具有取代基团的多肽,或(iii)成熟多肽与另一个化合物(比如延长多肽半衰期的化合物,例如聚乙二醇)融合所形成的多肽,或(iv)附加的氨基酸序列融合到此多肽序列而形成的多肽(如前导序列或分泌序列或用来纯化此多肽的序列或蛋白原序列)。根据本文的教导,这些片段、衍生物和类似物属于本领域熟练技术人员公知的范围。The present invention also includes fragments, derivatives and analogs of the exo-beta-1,4-glucanase/endo-beta-1,4-xylanase. As used herein, the terms "fragment", "derivative" and "analogue" refer to the native exo-beta-1,4-glucanase/endo-beta-1,4-glucanase/endo-beta-1,4-glucanase of the present invention A polypeptide having the same biological function or activity as xylanase. The polypeptide fragments, derivatives or analogs of the present invention may be (i) polypeptides having one or more conservative or non-conservative amino acid residues (preferably conservative amino acid residues) substituted, and such substituted amino acid residues It may or may not be encoded by the genetic code, or (ii) a polypeptide having a substituent group in one or more amino acid residues, or (iii) a mature polypeptide in combination with another compound (such as a compound that extends the half-life of the polypeptide, e.g. polyethylene glycol), or (iv) an additional amino acid sequence fused to the polypeptide sequence (such as a leader sequence or secretory sequence or a sequence used to purify the polypeptide or a proprotein sequence). Such fragments, derivatives and analogs are within the purview of those skilled in the art in light of the teachings herein.
在本发明中,术语“福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶”指具有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活性的SEQ ID NO:2序列的多肽。该术语还包括具有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的、SEQ IDNO:2序列的变异形式。这些变异形式包括(但并不限于):若干个(通常为1-50个,较佳地1-30个,更佳地1-20个,最佳地1-10个)氨基酸的缺失、插入和/或取代,以及在C末端和/或N末端添加一个或数个(通常为20个以内,较佳地为10个以内,更佳地为5个以内)氨基酸。例如,在本领域中,用性能相近或相似的氨基酸进行取代时,通常不会改变蛋白质的功能。又比如,在C末端和/或N末端添加一个或数个氨基酸通常也不会改变蛋白质的功能。该术语还包括福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的活性片段和活性衍生物。In the present invention, the term "Pipa snail exo-β-1,4-glucanase/endo-β-1,4-xylanase" refers to Enzyme/endo-beta-1,4-xylanase activity of the polypeptide of SEQ ID NO: 2 sequence. The term also includes variant forms of the sequence of SEQ ID NO: 2 having exo-β-1,4-glucanase/endo-β-1,4-xylanase. These variations include (but are not limited to): deletions and insertions of several (usually 1-50, preferably 1-30, more preferably 1-20, and most preferably 1-10) amino acids and/or substitution, and addition of one or several (usually within 20, preferably within 10, more preferably within 5) amino acids at the C-terminal and/or N-terminal. For example, in the art, substitutions with amino acids with similar or similar properties generally do not change the function of the protein. As another example, adding one or several amino acids at the C-terminus and/or N-terminus usually does not change the function of the protein. The term also includes active fragments and active derivatives of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase.
该多肽的变异形式包括:同源序列、保守性变异体、等位变异体、天然突变体、诱导突变体、在高或低的严紧度条件下能与福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶DNA杂交的DNA所编码的蛋白。本发明还提供了其他多肽,如包含福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶或其片段的融合蛋白。除了几乎全长的多肽外,本发明还包括了福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的可溶性片段。通常,该片段具有福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶序列的至少约30个连续氨基酸,较佳地至少约50个连续氨基酸,更佳地至少约80个连续氨基酸,最佳地至少约100个连续氨基酸。The variant forms of the polypeptide include: homologous sequences, conservative variants, allelic variants, natural mutants, induced mutants, and exo-β-1,4- Protein encoded by the DNA of the glucanase/endo-beta-1,4-xylanase DNA hybrid. The present invention also provides other polypeptides, such as fusion proteins comprising apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase or fragments thereof. In addition to the nearly full-length polypeptide, the present invention also includes soluble fragments of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase. Typically, the fragment has at least about 30 consecutive amino acids, preferably at least about 50 consecutive amino acids of the apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase sequence Amino acids, more preferably at least about 80 contiguous amino acids, most preferably at least about 100 contiguous amino acids.
发明还提供福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶或多肽的类似物。这些类似物与天然福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的差别可以是氨基酸序列上的差异,也可以是不影响序列的修饰形式上的差异,或者兼而有之。这些多肽包括天然或诱导的遗传变异体。诱导变异体可以通过各种技术得到,如通过辐射或暴露于诱变剂而产生随机诱变,还可通过定点诱变法或其他已知分子生物学的技术。类似物还包括具有不同于天然L-氨基酸的残基(如D-氨基酸)的类似物,以及具有非天然存在的或合成的氨基酸(如β、γ-氨基酸)的类似物。应理解,本发明的多肽并不限于上述例举的代表性的多肽。The invention also provides analogues of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase or polypeptide. The difference between these analogues and natural apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase may be the difference in amino acid sequence, or it may not affect the sequence A difference in the form of modification, or both. These polypeptides include natural or induced genetic variants. Induced variants can be obtained by various techniques, such as random mutagenesis by radiation or exposure to mutagens, but also by site-directed mutagenesis or other techniques known in molecular biology. Analogs also include analogs with residues other than natural L-amino acids (eg, D-amino acids), and analogs with non-naturally occurring or synthetic amino acids (eg, β, γ-amino acids). It should be understood that the polypeptides of the present invention are not limited to the representative polypeptides exemplified above.
修饰(通常不改变一级结构)形式包括:体内或体外的多肽的化学衍生形式如乙酰化或羧基化。修饰还包括糖基化,如那些在多肽的合成和加工中或进一步加工步骤中进行糖基化修饰而产生的多肽。这种修饰可以通过将多肽暴露于进行糖基化的酶(如哺乳动物的糖基化酶或去糖基化酶)而完成。修饰形式还包括具有磷酸化氨基酸残基(如磷酸酪氨酸,磷酸丝氨酸,磷酸苏氨酸)的序列。还包括被修饰从而提高了其抗蛋白水解性能或优化了溶解性能的多肽。Modified (usually without altering primary structure) forms include: chemically derivatized forms of polypeptides such as acetylation or carboxylation, in vivo or in vitro. Modifications also include glycosylation, such as those resulting from polypeptides that are modified by glycosylation during synthesis and processing of the polypeptide or during further processing steps. Such modification can be accomplished by exposing the polypeptide to an enzyme that performs glycosylation, such as a mammalian glycosylase or deglycosylation enzyme. Modified forms also include sequences with phosphorylated amino acid residues (eg, phosphotyrosine, phosphoserine, phosphothreonine). Also included are polypeptides that have been modified to increase their resistance to proteolysis or to optimize solubility.
在本发明中,“福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的保守性变异多肽”指与SEQ ID NO:2的氨基酸序列相比,有至多10个,较佳地至多8个,更佳地至多5个,最佳地至多3个氨基酸被性质相似或相近的氨基酸所替换而形成多肽。这些保守性变异多肽最好根据表A进行氨基酸替换而产生。In the present invention, "the conservative variant polypeptide of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase" refers to the amino acid sequence of SEQ ID NO:2 In contrast, at most 10, preferably at most 8, more preferably at most 5, and most preferably at most 3 amino acids are replaced by amino acids with similar or similar properties to form a polypeptide. These conservative variant polypeptides are preferably produced by amino acid substitutions according to Table A.
表A
本发明的多核苷酸可以是DNA形式或RNA形式。DNA形式包括cDNA、基因组DNA或人工合成的DNA。DNA可以是单链的或是双链的。DNA可以是编码链或非编码链。编码成熟多肽的编码区序列可以与SEQ ID NO:1所示的编码区序列相同或者是简并的变异体。如本文所用,“简并的变异体”在本发明中是指编码具有SEQ ID NO:2的蛋白质,但与SEQ ID NO:1所示的编码区序列有差别的核酸序列。A polynucleotide of the invention may be in the form of DNA or RNA. Forms of DNA include cDNA, genomic DNA or synthetic DNA. DNA can be single-stranded or double-stranded. DNA can be either the coding strand or the non-coding strand. The coding region sequence encoding the mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, "degenerate variant" in the present invention refers to a nucleic acid sequence that encodes a protein with SEQ ID NO: 2, but differs from the sequence of the coding region shown in SEQ ID NO: 1.
编码福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶成熟多肽的多核苷酸包括:只编码成熟多肽的编码序列;成熟多肽的编码序列+各种附加编码序列;成熟多肽的编码序列(和任选的附加编码序列)+非编码序列。The polynucleotide encoding the mature polypeptide of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase includes: the coding sequence that only encodes the mature polypeptide; the coding sequence of the mature polypeptide + Various additional coding sequences; the coding sequence (and optional additional coding sequences) of the mature polypeptide + non-coding sequences.
术语“编码福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多核苷酸”可以是包括仅编码福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多核苷酸,也可以是还包括附加编码和/或非编码序列的多核苷酸。The term "polynucleotide encoding apple snail exo-β-1, 4-glucanase/endo-β-1, 4-xylanase" may include only encoding apple snail exo-β-1,4 - A glucanase/endo-beta-1,4-xylanase polynucleotide, which may also comprise additional coding and/or non-coding sequences.
本发明还涉及上述多核苷酸的变异体,其编码与本发明有相同的氨基酸序列的多肽或多肽的片段、类似物和衍生物。此多核苷酸的变异体可以是天然发生的等位变异体或非天然发生的变异体。这些核苷酸变异体包括取代变异体、缺失变异体和插入变异体。如本领域所知的,等位变异体是一个多核苷酸的替换形式,它可能是一个或多个核苷酸的取代、缺失或插入,但不会从实质上改变其编码的多肽的功能。The present invention also relates to variants of the above-mentioned polynucleotides, which encode polypeptides or polypeptide fragments, analogs and derivatives having the same amino acid sequence as the present invention. Variants of this polynucleotide may be naturally occurring allelic variants or non-naturally occurring variants. These nucleotide variants include substitution variants, deletion variants and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide which may be a substitution, deletion or insertion of one or more nucleotides without substantially altering the function of the polypeptide it encodes .
本发明还涉及与上述的序列杂交且两个序列之间具有至少50%,较佳地至少70%,更佳地至少80%相同性的多核苷酸。本发明特别涉及在严格条件下与本发明所述多核苷酸可杂交的多核苷酸。在本发明中,“严格条件”是指:(1)在较低离子强度和较高温度下的杂交和洗脱,如0.2×SSC,0.1%SDS,60℃;或(2)杂交时加有变性剂,如50%(v/v)甲酰胺,0.1%小牛血清/0.1%Ficoll,42℃等;或(3)仅在两条序列之间的相同性至少在90%以上,更好是95%以上时才发生杂交。并且,可杂交的多核苷酸编码的多肽具有外切-β-1,4-葡聚糖酶活性和内切-β-1,4-木聚糖酶活性。The present invention also relates to polynucleotides that hybridize to the above-mentioned sequences and have at least 50%, preferably at least 70%, more preferably at least 80% identity between the two sequences. The invention particularly relates to polynucleotides which are hybridizable under stringent conditions to the polynucleotides of the invention. In the present invention, "stringent conditions" refers to: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2×SSC, 0.1% SDS, 60°C; or (2) hybridization with There are denaturing agents, such as 50% (v/v) formamide, 0.1% calf serum/0.1% Ficoll, etc.; or (3) only if the identity between the two sequences is at least 90%, more Preferably, hybridization occurs above 95%. Also, the polypeptide encoded by the hybridizable polynucleotide has exo-beta-1,4-glucanase activity and endo-beta-1,4-xylanase activity.
本发明还涉及与上述的序列杂交的核酸片段。如本文所用,“核酸片段”的长度至少含15个核苷酸,较好是至少30个核苷酸,更好是至少50个核苷酸,最好是至少100个核苷酸以上。核酸片段可用于核酸的扩增技术(如PCR)以确定和/或分离编码福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多聚核苷酸。The present invention also relates to nucleic acid fragments that hybridize to the above-mentioned sequences. As used herein, a "nucleic acid fragment" is at least 15 nucleotides in length, preferably at least 30 nucleotides in length, more preferably at least 50 nucleotides in length, most preferably at least 100 nucleotides in length. Nucleic acid fragments can be used in nucleic acid amplification techniques (such as PCR) to determine and/or isolate polysaccharides encoding apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase polynucleotide.
本发明的福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶核苷酸全长序列或其片段通常可以用PCR扩增法、重组法或人工合成的方法获得。对于PCR扩增法,可根据本发明所公开的有关核苷酸序列,尤其是开放阅读框序列来设计引物,并用按常规方法所制备的福寿螺cDNA库作为模板,扩增而得有关序列。The apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase nucleotide full-length sequence or its fragments of the present invention can usually be amplified by PCR or recombination or obtained by artificial synthesis. For the PCR amplification method, primers can be designed according to the relevant nucleotide sequences disclosed in the present invention, especially the open reading frame sequence, and the apple snail cDNA library prepared by conventional methods is used as a template to amplify to obtain the relevant sequences.
一旦获得了有关的序列,就可以用重组法来大批量地获得有关序列。这通常是将其克隆入载体,再转入细胞,然后通过常规方法从增殖后的宿主细胞中分离得到有关序列。Once the relevant sequences are obtained, recombinant methods can be used to obtain the relevant sequences in large quantities. Usually, it is cloned into a vector, then transformed into a cell, and then the relevant sequence is isolated from the proliferated host cell by conventional methods.
此外,还可用人工合成的方法来合成有关序列,尤其是片段长度较短时。In addition, related sequences can also be synthesized by artificial synthesis, especially when the fragment length is relatively short.
通常,通过先合成多个小片段,然后再进行连接可获得序列很长的片段。Often, fragments with very long sequences are obtained by synthesizing multiple small fragments and then ligating them.
目前,已经可以完全通过化学合成来得到编码本发明蛋白(或其片段,或其衍生物)的DNA序列。然后可将该DNA序列引入本领域中已知的各种现有的DNA分子(或如载体)和细胞中。此外,还可通过化学合成将突变引入本发明蛋白序列中。At present, the DNA sequence encoding the protein of the present invention (or its fragment, or its derivative) can be obtained completely through chemical synthesis. This DNA sequence can then be introduced into various existing DNA molecules (or eg vectors) and cells known in the art. In addition, mutations can also be introduced into the protein sequences of the invention by chemical synthesis.
本发明也涉及包含本发明的多核苷酸的载体,以及用本发明的载体或外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶编码序列转化的宿主细胞,以及经重组技术产生本发明所述多肽的方法。The present invention also relates to vectors comprising polynucleotides of the present invention, as well as vectors or exo-β-1,4-glucanase/endo-β-1,4-xylanase coding sequences of the present invention Transformed host cells, and methods for producing the polypeptides of the invention via recombinant techniques.
通过常规的重组DNA技术(Science,1984;224:1431),可利用本发明的多聚核苷酸序列可用来表达或生产重组的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。一般来说有以下步骤:By conventional recombinant DNA technology (Science, 1984; 224:1431), the polynucleotide sequence of the present invention can be used to express or produce recombinant exo-β-1,4-glucanase/endo - beta-1,4-xylanase. Generally speaking, there are the following steps:
(1).用本发明的编码外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的多核苷酸(或变异体),或用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞;(1). Use the polynucleotide (or variant) encoding exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention, or use the polynucleotide (or variant) containing the The recombinant expression vector of the polynucleotide transforms or transduces a suitable host cell;
(2).在合适的培养基中培养的宿主细胞;(2). Host cells cultured in a suitable medium;
(3).从培养基或细胞中分离、纯化蛋白质。(3). Isolate and purify protein from culture medium or cells.
本发明中,外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶多核苷酸序列可插入到重组表达载体中。术语“重组表达载体”指本领域熟知的细菌质粒、噬菌体、酵母质粒、或其他载体。在本发明中适用的载体包括但不限于:在细菌中表达的基于T7的表达载体(Rosenberg,et al.Gene,1987,56:125)。总之,只要能在宿主体内复制和稳定,任何质粒和载体都可以用。表达载体的一个重要特征是通常含有复制起点、启动子、标记基因和翻译控制元件。In the present invention, the exo-β-1,4-glucanase/endo-β-1,4-xylanase polynucleotide sequence can be inserted into the recombinant expression vector. The term "recombinant expression vector" refers to bacterial plasmids, bacteriophages, yeast plasmids, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7-based expression vectors for expression in bacteria (Rosenberg, et al. Gene, 1987, 56:125). In short, any plasmid and vector can be used as long as it can be replicated and stabilized in the host. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, marker genes, and translational control elements.
本领域的技术人员熟知的方法能用于构建含外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶编码DNA序列和合适的转录/翻译控制信号的表达载体。这些方法包括体外重组DNA技术、DNA合成技术、体内重组技术等(Sambroook,et al.Molecular Cloning,a Laboratory Manual,cold Spring Harbor Laboratory.New York,1989)。所述的DNA序列可有效连接到表达载体中的适当启动子上,以指导mRNA合成。这些启动子的代表性例子有:大肠杆菌的lac或trp启动子;λ噬菌体PL启动子;真核启动子包括CMV立即早期启动子、HSV胸苷激酶启动子、早期和晚期SV40启动子、反转录病毒的LTRs和其他一些已知的可控制基因在原核或真核细胞或其病毒中表达的启动子。表达载体还包括翻译起始用的核糖体结合位点和转录终止子。Methods well known to those skilled in the art can be used to construct DNA sequences encoding exo-β-1,4-glucanase/endo-β-1,4-xylanase and appropriate transcription/translation controls Signal expression vector. These methods include in vitro recombinant DNA technology, DNA synthesis technology, in vivo recombination technology etc. (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989). Said DNA sequence can be operably linked to an appropriate promoter in the expression vector to direct mRNA synthesis. Representative examples of these promoters are: E. coli lac or trp promoter; lambda phage PL promoter; eukaryotic promoters include CMV immediate early promoter, HSV thymidine kinase promoter, early and late SV40 promoter, reverse LTRs of transcription viruses and other promoters known to control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site for translation initiation and a transcription terminator.
此外,表达载体优选地包含一个或多个选择性标记基因,以提供用于选择转化的宿主细胞的表型性状,如真核细胞培养用的二氢叶酸还原酶、以及新霉素抗性,或用于大肠杆菌的四环素、卡那霉素或氨苄青霉素抗性。In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase for eukaryotic cell culture, and neomycin resistance, Or tetracycline, kanamycin or ampicillin resistance for E. coli.
包含上述的适当DNA序列以及适当启动子或者控制序列的载体,可以用于转化适当的宿主细胞,以使其能够表达蛋白质。Vectors containing the above-mentioned appropriate DNA sequences and appropriate promoters or control sequences can be used to transform appropriate host cells so that they can express proteins.
宿主细胞可以是原核细胞,如细菌细胞;或是低等真核细胞,如酵母细胞;或是高等真核细胞。较佳地是大肠杆菌。代表性例子有:大肠杆菌,链霉菌属;鼠伤寒沙门氏菌的细菌细胞;真菌细胞如酵母等。The host cell may be a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell. Escherichia coli is preferred. Representative examples are: Escherichia coli, Streptomyces; bacterial cells of Salmonella typhimurium; fungal cells such as yeast, etc.
用重组DNA转化宿主细胞可用本领域技术人员熟知的常规技术进行。当宿主为原核生物如大肠杆菌时,能吸收DNA的感受态细胞可在指数生长期后收获,用CaCl2法处理,所用的步骤在本领域众所周知。另一种方法是使用MgCl2。如果需要,转化也可用电穿孔的方法进行。当宿主是真核生物,可选用如下的DNA转染方法:磷酸钙共沉淀法,常规机械方法如显微注射、电穿孔、脂质体包装等。Transformation of host cells with recombinant DNA can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryotic organism such as E. coli, competent cells capable of taking up DNA can be harvested after the exponential growth phase and treated with the CaCl2 method using procedures well known in the art. Another method is to use MgCl2 . Transformation can also be performed by electroporation, if desired. When the host is eukaryotic, the following DNA transfection methods can be used: calcium phosphate co-precipitation method, conventional mechanical methods such as microinjection, electroporation, liposome packaging, etc.
获得的转化子可以用常规方法培养,表达本发明的基因所编码的多肽。根据所用的宿主细胞,培养中所用的培养基可选自各种常规培养基。在适于宿主细胞生长的条件下进行培养。当宿主细胞生长到适当的细胞密度后,用合适的方法(如温度转换或化学诱导)诱导选择的启动子,将细胞再培养一段时间。The obtained transformant can be cultured by conventional methods to express the polypeptide encoded by the gene of the present invention. The medium used in the culture can be selected from various conventional media according to the host cells used. The culture is carried out under conditions suitable for the growth of the host cells. After the host cells have grown to an appropriate cell density, the selected promoter is induced by an appropriate method (such as temperature shift or chemical induction), and the cells are cultured for an additional period of time.
在上面的方法中的重组多肽可在细胞内、或在细胞膜上表达、或分泌到细胞外。如果需要,可利用其物理的、化学的和其它特性通过各种分离方法分离和纯化重组的蛋白。这些方法是本领域技术人员所熟知的。这些方法的例子包括但并不限于:常规的复性处理、用蛋白沉淀剂处理(盐析方法)、离心、渗透破菌、超处理、超离心、分子筛层析(凝胶过滤)、吸附层析、离子交换层析、高效液相层析(HPLC)和其它各种液相层析技术及这些方法的结合。The recombinant polypeptide in the above method can be expressed inside the cell, or on the cell membrane, or secreted outside the cell. The recombinant protein can be isolated and purified by various separation methods by taking advantage of its physical, chemical and other properties, if desired. These methods are well known to those skilled in the art. Examples of these methods include, but are not limited to: conventional refolding treatment, treatment with protein precipitating agents (salting out method), centrifugation, osmotic disruption, supertreatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption layer Analysis, ion exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.
本发明的酶还包括固定在固相载体上的固定化酶。本领域熟知的各种固定化酶技术都可用于制备本发明的固定化的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。The enzymes of the present invention also include immobilized enzymes immobilized on solid phase supports. Various immobilized enzyme techniques well known in the art can be used to prepare the immobilized exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention.
此外,本发明提供了外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶、其编码序列、载体或宿主细胞的用途,它们被用于生产简单糖,尤其是葡萄糖的工艺。所述的简单糖包括纤维二糖、简单戊糖、葡萄糖及其混合物。In addition, the present invention provides the use of exo-β-1,4-glucanase/endo-β-1,4-xylanase, its coding sequence, vector or host cell, which are used to produce The craft of simple sugars, especially glucose. The simple sugars include cellobiose, simple pentoses, glucose and mixtures thereof.
本发明的生产简单糖的工艺包括步骤:(a)用本发明上述的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶或转化或转导的宿主细胞处理纤维素材料,从而产生简单糖;(b)分离出所述的简单糖。本发明酶可直接产生纤维二糖、简单戊糖等简单糖。优选的工艺还包括加入其他酶,例如β-葡萄糖苷酶(可将纤维二糖水解为葡萄糖),这样就可直接产生葡萄糖。The process for producing simple sugars of the present invention comprises the steps of: (a) using the above-mentioned exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention or transforming or transforming processing the cellulosic material by the induced host cells to produce simple sugars; (b) isolating said simple sugars. The enzyme of the invention can directly produce simple sugars such as cellobiose and simple pentose. A preferred process also includes the addition of other enzymes, such as β-glucosidase (which hydrolyzes cellobiose to glucose), so that glucose can be produced directly.
一种代表性的工艺包括步骤:(a)将用机械铰碎稻草与含0.1M氯化钠的0.05M pH5.2醋酸缓冲液按20-30%混合(按重量/体积)在45℃预热10-15分钟。(b)然后加入0.05-0.2%外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶和β-葡萄糖苷酶,缓慢搅动,在45℃水浴反应12-24小时,收集自然沉降的90%上清部分。蒸干得到葡萄糖粗品。(C)沉淀部分补加含0.1M氯化钠的0.05M pH5.2醋酸缓冲液至原体积,缓慢搅动在45℃水浴反应24小时,收集自然沉降的90%上清部分。蒸干得到葡萄糖粗品。A representative technique comprises the steps of: (a) mixing (by weight/volume) 20-30% of mechanically crushed rice straw with 0.05M pH5.2 acetate buffer containing 0.1M sodium chloride at 45° C. Heat for 10-15 minutes. (b) Then add 0.05-0.2% exo-β-1,4-glucanase/endo-β-1,4-xylanase and β-glucosidase, stir slowly, and place in a water bath at 45°C After reacting for 12-24 hours, collect 90% supernatant of natural sedimentation. Evaporate to dryness to obtain crude glucose. (C) Add 0.05M pH5.2 acetic acid buffer solution containing 0.1M sodium chloride to the original volume of the precipitated part, stir slowly and react in a water bath at 45°C for 24 hours, and collect 90% of the supernatant part of natural sedimentation. Evaporate to dryness to obtain crude glucose.
本发明葡聚糖外切酶的主要优点在于:The main advantage of exoglucanase of the present invention is:
(1)活性高。本发明的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶具有最高活力的纤维素外切酶(水解微晶纤维素)和半纤维素酶之一(两种酶的比活力为每毫克蛋白37和1300国际单位)。(1) High activity. Exo-β-1,4-glucanase/endo-β-1,4-xylanase of the present invention has the highest activity of cellulosic exonuclease (hydrolyzing microcrystalline cellulose) and hemicellulose One of the enzymes (the specific activities of the two enzymes are 37 and 1300 IU per mg protein).
(2)单一的该酶就能水解未经任何化学处理的稻草生成简单糖,这种性质则是已报道的纤维素酶所不具备的,该性质在水解天然纤维素上极具商业开发价值。(2) A single enzyme can hydrolyze rice straw without any chemical treatment to produce simple sugars, which is not possessed by the reported cellulase enzymes. This property is of great commercial development value in hydrolyzing natural cellulose .
(3)在氯离子存在时,具有水解纤维素或半纤维素的双重活力;在没有氯离子存在时,只水解半纤维素。即氯离子对该纤维素酶对底物的催化反应的选择性可进行开关式调节。这有助于扩大其应用范围。(3) In the presence of chloride ions, it has dual activity of hydrolyzing cellulose or hemicellulose; in the absence of chloride ions, it only hydrolyzes hemicellulose. That is, the selectivity of chloride ions in the catalytic reaction of the cellulase to the substrate can be switched on and off. This helps to expand its range of applications.
(4)外切酶水解纤维素的活力不受产物(纤维二糖)抑制,这对提高天然纤维素成糖的转化率,降低成本都是极为有利的。(4) The activity of exonuclease to hydrolyze cellulose is not inhibited by the product (cellobiose), which is extremely beneficial for improving the conversion rate of natural cellulose into sugar and reducing costs.
下面结合具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。Below in conjunction with specific embodiment, further illustrate the present invention. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention. The experimental methods not indicating specific conditions in the following examples are usually according to conventional conditions such as Sambrook et al., molecular cloning: the conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's suggested conditions.
实施例1:Example 1:
福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶纯化:Purification of apple snail exo-β-1,4-glucanase/endo-β-1,4-xylanase:
福寿螺广泛分布在中国福建、广东,广西,浙江,江苏等省,福寿螺是20年前作为食用从南美引进的,其喜食秧苗,即使水质不佳,福寿螺也能成倍繁殖生长,成了河道及水稻田里的一大祸害。将市场上购得的福寿螺作为实验材料。Apple snails are widely distributed in Fujian, Guangdong, Guangxi, Zhejiang, Jiangsu and other provinces in China. Apple snails were introduced from South America 20 years ago as food. They like to eat seedlings. Even if the water quality is poor, apple snails can multiply and grow, becoming rivers. and a scourge in rice fields. The apple snails purchased in the market were used as experimental materials.
(1)抽取福寿螺胃液,以0.5饱和度硫酸铵沉淀。(1) Extract gastric juice from apple snails and precipitate with 0.5 saturation degree ammonium sulfate.
(2)收集沉淀,以10mM磷酸缓冲液(含0.1M氯化钠及1mMEDTA)溶解,透析。(2) Collect the precipitate, dissolve it with 10mM phosphate buffer (containing 0.1M sodium chloride and 1mM EDTA), and dialyze.
(3)上DEAE-Sephadex A-50柱层析纯化,收集穿出峰。(3) Purify by DEAE-Sephadex A-50 column chromatography, and collect the passing peaks.
(4)上Bio-gel P-100柱层析纯化,收集pNPC(p-Nitrophenyl β-D-cellobioside)水解活力峰。(4) Purified by Bio-gel P-100 column chromatography, and collected the hydrolysis activity peak of pNPC (p-Nitrophenyl β-D-cellobioside).
(5)经苯基-Sepharose CL-4B柱层析纯化,收集合并pNPC水解活力峰,即得到福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶纯酶制剂。(5) Purify by phenyl-Sepharose CL-4B column chromatography, collect and combine the hydrolysis activity peaks of pNPC, and obtain the apple snail exo-β-1,4-glucanase/endo-β-1,4-wood Glycanase pure enzyme preparation.
按以上步骤,可得到SDS-PAGE均一的福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。According to the above steps, the exo-β-1,4-glucanase/endo-β-1,4-xylanase of apple snail with uniform SDS-PAGE can be obtained.
实施例2Example 2
外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶氨基酸序列测定Amino acid sequence determination of exo-β-1,4-glucanase/endo-β-1,4-xylanase
2.1主要试剂与仪器2.1 Main reagents and instruments
PVDF膜购自Millipore公司。内切-Glu C蛋白酶购自Promega公司。DTT购自Boehringer公司。碘乙酸(ICH2COOH)购自Sigma公司。电转膜系统选用LKB公司2117-250 NOVABLOT Electrophoretic Transfer Kit。PVDF membranes were purchased from Millipore Corporation. Endo-Glu C protease was purchased from Promega. DTT was purchased from Boehringer Corporation. Iodoacetic acid (ICH 2 COOH) was purchased from Sigma. The electrotransfer system uses 2117-250 NOVABLOT Electrophoretic Transfer Kit from LKB Company.
2.2外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶天然N-末端氨基酸序列测定2.2 Exo-β-1,4-glucanase/endo-β-1,4-xylanase native N-terminal amino acid sequence determination
外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶纯酶制剂上样进行SDS-PAGE,其中浓缩胶5%,分离胶10%,每孔上样70ug,电泳电压70V 30分钟,再125V 90分钟。Exo-β-1,4-glucanase/endo-β-1,4-xylanase pure enzyme preparation is loaded for SDS-PAGE, in which the stacking gel is 5%, the separating gel is 10%, each well 70ug of sample was loaded, the electrophoresis voltage was 70V for 30 minutes, and then 125V for 90 minutes.
电泳结束后,将分离胶以半干法转膜。转膜结束后以0.2%丽春红S(溶于3%三氯乙酸)染色PVDF膜1分钟,以双蒸水脱色,剪下外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶蛋白条带。委托上海生化所进行蛋白氨基酸序列测定。After electrophoresis, the separation gel was transferred to the membrane by semi-dry method. After transfer, stain the PVDF membrane with 0.2% Ponceau S (dissolved in 3% trichloroacetic acid) for 1 minute, decolorize with double distilled water, and cut out the exo-β-1,4-glucanase/endo - Beta-1,4-xylanase protein band. Entrusted the Shanghai Institute of Biochemistry to determine the amino acid sequence of the protein.
测得外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶天然N-末端氨基酸序列为:The measured exo-β-1,4-glucanase/endo-β-1,4-xylanase natural N-terminal amino acid sequence is:
NH2-Ala-Ala-Gly-Ala-Gly-Val-Thr-Ser-Glu-Ile(SEQ ID NO:3)NH 2 -Ala-Ala-Gly-Ala-Gly-Val-Thr-Ser-Glu-Ile (SEQ ID NO: 3)
2.3含有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶N-末端氨基酸序列的蛋白酶水解片段测定2.3 Determination of proteolytic fragments containing exo-β-1,4-glucanase/endo-β-1,4-xylanase N-terminal amino acid sequence
内切-Glu C蛋白酶水解外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶,SDS-PAGE电泳分离蛋白酶解产物(图1),电泳结束后,将分离胶以半干法转膜。以0.2mA/cm2电流转移12小时。转膜结束后以0.2%丽春红S(溶于3%三氯乙酸)染色PVDF膜1分钟,以双蒸水脱色,剪下图1箭头所示组分I,进行蛋白氨基酸序列测定(委托上海生化所)。Endo-Glu C protease hydrolyzes exo-β-1,4-glucanase/endo-β-1,4-xylanase, SDS-PAGE electrophoresis separates the proteolysis product (Figure 1), electrophoresis ends Afterwards, the separating gel was transferred to the membrane by a semi-dry method. Transfer at a current of 0.2 mA/ cm2 for 12 hours. After the membrane transfer, stain the PVDF membrane with 0.2% Ponceau S (dissolved in 3% trichloroacetic acid) for 1 minute, decolorize it with double distilled water, cut out the component I shown by the arrow in Figure 1, and perform protein amino acid sequence determination (consigned Shanghai Institute of Biochemistry).
测得组分I N-末端氨基酸序列为:NH2-Leu-Phe-Arg-Ile-Ala-His-Ala- Ala-Asp-Pro(SEQ ID NO:4)The N-terminal amino acid sequence of component I was determined as: NH 2 -Leu-Phe-Arg-Ile-Ala-His-Ala-Ala-Asp-Pro (SEQ ID NO: 4)
实施例3Example 3
外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的cDNA克隆cDNA cloning of exo-β-1,4-glucanase/endo-β-1,4-xylanase
3.1仪器3.1 Instrument
PCR仪选用美国Ericomp公司SingleBlockTM system。The PCR instrument is the SingleBlock TM system from Ericomp Company of the United States.
3.2RNA抽提及反转录3.2 RNA extraction and reverse transcription
取新鲜的福寿螺的胃组织以Trizol抽提总RNA,并以oligo(dT)18为引物反转录生成cDNA作为PCR模板。Total RNA was extracted from fresh apple snail stomach tissue with Trizol, and cDNA was reverse-transcribed using oligo(dT) 18 as a primer to serve as a PCR template.
3.3第一步PCR3.3 The first step of PCR
根据蛋白测序所得的两段氨基酸序列,合成以下PCR兼并引物:According to the two amino acid sequences obtained by protein sequencing, the following PCR degenerate primers were synthesized:
Primer 1A:Primer 1A:
5′-GCA(T/G/C) GCA(T/G/C) GGA(T/G/C) GCA(T/G/C) GGA(T/G/C)5′-GCA(T/G/C) GCA(T/G/C) GGA(T/G/C) GCA(T/G/C) GGA(T/G/C)
GTA(T/G/C) AC-3′(SEQ ID NO:5)GTA(T/G/C) AC-3' (SEQ ID NO: 5)
Primer 1B:Primer 1B:
5′-GG A(G)TC A(T/G/C)GC A(T/G/C)GC A(G)TG A(T/G/C)GCA(G)AT-3′(SEQ ID NO:6)5′-GG A(G)TC A(T/G/C)GC A(T/G/C)GC A(G)TG A(T/G/C)GCA(G)AT-3′(SEQ ID NO: 6)
以反转录所得cDNA为模板,进行DNA扩增反应,得到一条约600bp长度的DNA产物。将该DNA产物装入pBluescript II SK(+)T-vector,克隆并测序,得到该基因的中部片段。Using the cDNA obtained by reverse transcription as a template, the DNA amplification reaction was carried out to obtain a DNA product with a length of about 600 bp. The DNA product was loaded into pBluescript II SK(+)T-vector, cloned and sequenced to obtain the middle fragment of the gene.
3.4第二步PCR3.4 The second step of PCR
根据已得的基因片段,设计合成巢式PCR引物,According to the obtained gene fragments, design and synthesize nested PCR primers,
Primer 2(外引物):Primer 2 (outer primer):
5′-ACC AGC ATC AAC TGA ATG-3′(SEQ ID NO:7)5'-ACC AGC ATC AAC TGA ATG-3' (SEQ ID NO: 7)
Primer 3(内引物):Primer 3 (inner primer):
5′-ATG ACA ATG GCT ACA AC-3′(SEQ ID NO:8)5′-ATG ACA ATG GCT ACA AC-3′ (SEQ ID NO: 8)
巢式PCR第一步以外引物Primer 2和oligo(dT)18为引物对,第二步以内引物Primer 3和oligo(dT)18为引物对,最后可得到一个约900bp的DNA片段。将该DNA产物装入pBluescript II SK(+)T-vector,克隆并测序,得到该基因的3′端片段。In the first step of nested PCR, the outer primer Primer 2 and oligo(dT) 18 are used as a primer pair, and in the second step, the inner primer Primer 3 and oligo(dT) 18 are used as a primer pair, and finally a DNA fragment of about 900 bp can be obtained. The DNA product was loaded into pBluescript II SK(+)T-vector, cloned and sequenced to obtain the 3' end fragment of the gene.
3.5第三步PCR3.5 The third step of PCR
根据已得的基因片段设计合成以下5′-RACE反转录引物及巢式PCR引物:Design and synthesize the following 5′-RACE reverse transcription primers and nested PCR primers according to the obtained gene fragments:
GSP1:GSP1:
5′-ACA TCC CAG TGC T-3′(SEQ ID NO:9)5'-ACA TCC CAG TGC T-3' (SEQ ID NO: 9)
GSP2:GSP2:
5′-GAG CCT TGA CCC AGT TCT G-3′(SEQ ID NO:10)5'-GAG CCT TGA CCC AGT TCT G-3' (SEQ ID NO: 10)
GSP3:GSP3:
5′-ACC GCC CAG TTG TAG TGC TGG T-3′(SEQ ID NO:11)5'-ACC GCC CAG TTG TAG TGC TGG T-3' (SEQ ID NO: 11)
Anchor:Anchor:
5′-GGC CTG CAG TCG ACT AGT ACT TTT TTT TTT TTT TTT T-3′(SEQ IDNO:12)5'-GGC CTG CAG TCG ACT AGT ACT TTT TTT TTT TTT TTT T-3' (SEQ ID NO: 12)
UAP:UAPs:
5′-GGC CTG CAG TCG ACT AGT AC-3′(SEQ ID NO:13)5'-GGC CTG CAG TCG ACT AGT AC-3' (SEQ ID NO: 13)
以GSP1为引物反转录福寿螺胃组织总RNA,生成cDNA模板,经RNaseH水解、cDNA3′端加poly(dA)尾后,以此cDNA为模板进行巢式PCR扩增,得到目的DNA片段,将该DNA片段装入pBluescript II SK(+)T-vector,克隆并测序。该目的DNA片段即外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的5′端片段。GSP1 was used as primer to reverse transcribe the total RNA of apple snail stomach tissue to generate cDNA template, which was hydrolyzed by RNaseH and poly(dA) tail was added to the 3′ end of cDNA, and the cDNA was used as template for nested PCR amplification to obtain the target DNA fragment. The DNA fragment was loaded into pBluescript II SK(+)T-vector, cloned and sequenced. The target DNA fragment is the 5' end fragment of the exo-β-1,4-glucanase/endo-β-1,4-xylanase gene.
3.6第四步PCR3.6 The fourth step of PCR
根据已得的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的5′端片段和3′端片段,合成以下引物:According to the 5' end fragment and the 3' end fragment of the exo-β-1,4-glucanase/endo-β-1,4-xylanase gene, the following primers were synthesized:
Primer 4A:Primer 4A:
5′-CAG GCT GAC CAG AAT CCA CTA-3′(SEQ ID NO:14)5'-CAG GCT GAC CAG AAT CCA CTA-3' (SEQ ID NO: 14)
Primer 4B:Primer 4B:
5′-TTC AAC TTT ATT GCC CTC TG-3′(SEQ ID NO:15)5'-TTC AAC TTT ATT GCC CTC TG-3' (SEQ ID NO: 15)
以oligo(dT)18为引物反转录福寿螺胃组织总RNA,生成cDNA模板,选取Primer 4A和Primer 4B为引物扩增得到该基因全长片段,将该DNA片段装入pBluescript II SK(+)T-vector,克隆并测序。所得片段全长1293bp(SEQID NO:1),其中包含开放阅读框1188bp,5′非翻译区77bp以及3′非翻译区30bp,编码含395个氨基酸残基的葡聚糖外切酶(SEQ ID NO:2)。Using oligo(dT) 18 as a primer to reverse transcribe the total RNA of the apple snail stomach tissue to generate a cDNA template, select Primer 4A and Primer 4B as primers to amplify the full-length fragment of the gene, and load the DNA fragment into pBluescript II SK(+) T-vector, cloned and sequenced. The resulting fragment has a full length of 1293bp (SEQ ID NO: 1), which comprises an open reading frame of 1188bp, a 5' untranslated region of 77bp and a 3' untranslated region of 30bp, encoding an exoglucanase (SEQ ID NO: 395) containing 395 amino acid residues NO: 2).
序列比对表明,福寿螺的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶的cDNA和由此推导出的氨基酸顺序与好氧菌cellulomonas fimi中的纤维素外切酶/木聚糖酶(exo-glucanase/xylanase)都有很大差异。Sequence alignment shows that the exo-β-1,4-glucanase/endo-β-1,4-xylanase cDNA of apple snail and the deduced amino acid sequence are similar to those of the aerobic bacteria cellulomonas fimi Cellulose exo-glucanase/xylanase (exo-glucanase/xylanase) are very different.
实施例4Example 4
福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶cDNA在甲醇酵母中的表达Expression of exo-β-1,4-glucanase/endo-β-1,4-xylanase cDNA of apple snail in methanolic yeast
4.1构建甲醇酵母表达菌株4.1 Construction of methanol yeast expression strain
将实施例3中获得的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因,经EcoRI和NotI酶切后,装入同样酶切的甲醇酵母分泌型表达质粒pPIC9K中,并转化大肠杆菌E.coli DH12S,得到含分泌型重组表达质粒pPIC9K-EGX的单克隆菌株。The exo-beta-1,4-glucanase/endo-beta-1,4-xylanase gene obtained in Example 3, after being cut by EcoRI and NotI, was loaded into the same enzyme cut The methanol yeast secretory expression plasmid pPIC9K was transformed into Escherichia coli E.coli DH12S to obtain a monoclonal strain containing the secretory recombinant expression plasmid pPIC9K-EGX.
抽提分泌型重组表达质粒pPIC9K-EGX,并取5μg以限制性内切酶Bpu1102I单切线性化。The secretory recombinant expression plasmid pPIC9K-EGX was extracted, and 5 μg was single-cut and linearized with the restriction endonuclease Bpu1102I.
取5ug线性化质粒pPIC9K-EGX电转化甲醇酵母GS115细胞,电转化细胞在MD平板上筛选His+克隆。Take 5ug of the linearized plasmid pPIC9K-EGX to electrotransform methanolic yeast GS115 cells, and the electrotransformed cells are screened for His + clones on MD plates.
挑取20-30个His+克隆,抽提DNA,并以PCR方法确证含有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的克隆。Pick 20-30 His + clones, extract DNA, and confirm the clone containing exo-β-1,4-glucanase/endo-β-1,4-xylanase gene by PCR method .
将含有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的克隆在MM平板上筛选Mut+表型。Clones containing exo-β-1,4-glucanase/endo-β-1,4-xylanase genes were screened for Mut + phenotype on MM plates.
4.2.甲醇酵母表达菌株在液体培养基中的表达4.2. Expression of methanol yeast expression strain in liquid medium
将含有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的克隆接种于1ml BMG培养基中,30℃220rpm培养24小时。Inoculate the clone containing the exo-β-1,4-glucanase/endo-β-1,4-xylanase gene in 1ml of BMG medium and culture at 220rpm at 30°C for 24 hours.
将MG培养菌液以1∶200比例分别接种到5ml BMGY培养基中,30℃220rpm培养至OD600=2-6,将菌体转移到BMMY培养基中,使菌液浓度达OD600=1.0,30℃220rpm培养7天,每24小时补加甲醇至0.5%。Inoculate the MG culture solution into 5ml of BMGY medium at a ratio of 1:200, culture at 30°C and 220rpm until OD 600 =2-6, transfer the bacteria to BMMY medium, and make the concentration of the bacteria solution reach OD 600 =1.0 , 30° C. 220 rpm for 7 days, supplemented with methanol to 0.5% every 24 hours.
离心收集菌体,测定细胞内和细胞外的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活性。The cells were collected by centrifugation, and the activities of exo-β-1,4-glucanase/endo-β-1,4-xylanase inside and outside the cells were determined.
4.3.甲醇酵母表达菌株在固体培养基中的表达4.3. Expression of methanol yeast expression strain in solid medium
将含有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶基因的克隆接种于1ml MG培养基(1.34%酵母基本氮源、0.1%甘油、0.1M pH6.0磷酸缓冲液、20mM氯化钠、生物素4×10-5%)中,30℃220rpm培养24小时。Inoculate the clone containing exo-β-1,4-glucanase/endo-β-1,4-xylanase gene in 1ml MG medium (1.34% yeast basic nitrogen source, 0.1% glycerol, 0.1M pH6.0 phosphate buffer, 20mM sodium chloride, biotin 4×10 -5 %), and cultured at 220 rpm at 30°C for 24 hours.
将MG培养菌液以1∶200比例分别接种到5ml BMGY培养基(1.34%酵母基本氮源、0.1%甘油、0.1M pH6.0磷酸缓冲液、20mM氯化钠、生物素4×10-5%)中,30℃220rpm培养至OD600=2-6,各取0.5μgl培养物点于BMMY平板培养基上,30℃培养7天,每24小时补加100μl甲醇于培养皿的上盖。The MG culture solution was inoculated into 5ml BMGY medium (1.34% yeast basic nitrogen source, 0.1% glycerol, 0.1M pH6.0 phosphate buffer, 20mM sodium chloride, biotin 4×10 -5 %) at 220 rpm at 30°C until OD 600 = 2-6, spot 0.5 μl of the culture on BMMY plate medium, culture at 30°C for 7 days, and add 100 μl of methanol to the upper cover of the culture dish every 24 hours.
双蒸水冲洗去BMMY平板培养基(1.34%酵母基本氮源、0.1M pH6.0磷酸缓冲液、20mM氯化钠、0.1%可溶性木聚糖、2%琼脂粉、生物素4×10-5%、甲醇0.5%)表面的甲醇酵母菌落,加10ml 0.1%刚果红染色40分钟,再加1N氯化钠溶液脱色,所显金黄色水解斑即表明有外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶水解活力产生。Wash away the BMMY plate culture medium (1.34% yeast basic nitrogen source, 0.1M pH6.0 phosphate buffer, 20mM sodium chloride, 0.1% soluble xylan, 2% agar powder, biotin 4×10 -5 %, methanol 0.5%) surface methanol yeast colonies, add 10ml 0.1% Congo red staining for 40 minutes, then add 1N sodium chloride solution for decolorization, the golden yellow hydrolysis spot shows that exo-β-1,4-glucose Glycanase/endo-β-1,4-xylanase hydrolytic activity produced.
结果如图2所示,大斑点为含有纤维素酶的甲醇酵母表达菌株,它生长过程释放纤维素酶到细胞外,使固体培养基中的纤维素被水解成简单糖。未转入福寿螺葡聚糖外切酶基因的对照菌无明显的斑点产生。The results are shown in Figure 2. The big spot is the methanolic yeast expression strain containing cellulase, which releases cellulase to the outside of the cell during its growth, so that the cellulose in the solid medium is hydrolyzed into simple sugars. The control bacteria not transfected with the apple snail exoglucanase gene had no obvious spots.
4.4.重组葡聚糖外切酶的分离纯化4.4. Isolation and purification of recombinant exoglucanase
1)4.2.发酵7天的培养液离心上清部分,用0.5饱和度硫酸铵沉淀,其沉淀即是该重组酶的粗制品。1) 4.2. Centrifuge the supernatant part of the culture broth fermented for 7 days, and precipitate it with 0.5 saturated ammonium sulfate, and the precipitate is the crude product of the recombinant enzyme.
(2)将粗制品用10mM磷酸缓冲液(含0.1M氯化钠及1mMEDTA)溶解,透析。(2) Dissolve the crude product in 10 mM phosphate buffer (containing 0.1 M sodium chloride and 1 mM EDTA), and dialyze.
(3)上DEAE-Sephadex A-50柱层析纯化,收集穿出峰。(3) Purify by DEAE-Sephadex A-50 column chromatography, and collect the passing peaks.
(4)上Bio-gel P-100柱层析纯化,收集pNPC(p-Nitrophenyl β-D-cellobioside)水解活力峰。(4) Purified by Bio-gel P-100 column chromatography, and collected the hydrolysis activity peak of pNPC (p-Nitrophenyl β-D-cellobioside).
(5)经苯基-Sepharose CL-4B柱层析纯化,收集合并pNPC水解活力峰,即得到福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶纯酶制剂。(5) Purify by phenyl-Sepharose CL-4B column chromatography, collect and combine the hydrolysis activity peaks of pNPC, and obtain apple snail exo-β-1,4-glucanase/endo-β-1,4-wood Glycanase pure enzyme preparation.
按以上步骤,可得到SDS-PAGE均一的福寿螺外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶。According to the above steps, the exo-β-1,4-glucanase/endo-β-1,4-xylanase of apple snail with uniform SDS-PAGE can be obtained.
实施例5Example 5
外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活力测定Exo-β-1,4-glucanase/endo-β-1,4-xylanase activity assay
5.1对硝基酚纤维二糖苷(pNPC)水解活力(纤维素外切酶)测定5.1 Determination of hydrolysis activity (exocellulase) of p-nitrophenol cellobioside (pNPC)
450μl 1mg/ml pNPC(溶解于含0.1M氯化钠的0.1M pH5.2醋酸缓冲液中)+50μl 10mg/ml D-Gluconi Acid Lactone(溶解于0.1M pH5.2醋酸缓冲液中)→45℃水浴5分钟→加入适量酶液→45℃水浴反应8分钟→加入525μl 2%Na2CO3终止反应,并显色→读取410nm处光吸收值。消光系数为1.76×10-5pM-1 450μl 1mg/ml pNPC (dissolved in 0.1M pH5.2 acetate buffer containing 0.1M sodium chloride)+50μl 10mg/ml D-Gluconi Acid Lactone (dissolved in 0.1M pH5.2 acetate buffer)→45 ℃ water bath for 5 minutes→add appropriate amount of enzyme solution→react in 45℃ water bath for 8 minutes→add 525μl 2% Na 2 CO 3 to stop the reaction, and develop color→read the light absorption value at 410nm. The extinction coefficient is 1.76×10 -5 pM -1
pNPC水解活力定义为在上述条件下,每分钟水解生成1pmol对硝基酚(pNP)所需的酶量为1个单位(unit)。The hydrolysis activity of pNPC is defined as 1 unit (unit) of the enzyme required to hydrolyze 1 pmol of p-nitrophenol (pNP) per minute under the above conditions.
5.2微晶纤维素(Sigmacell)水解活力测定5.2 Determination of hydrolysis activity of microcrystalline cellulose (Sigmacell)
500μl 1%Sigamcell(悬浮于含0.1M氯化钠的0.1M pH5.2醋酸缓冲液中)→45℃水浴预热5分钟→加入适量酶液,45℃水浴反应8分钟→加入含40μg/ml葡萄糖的DNS试剂0.5ml→沸水浴5分钟,冷水冷却,补入0.5ml双蒸水→读取540nm处光吸收值。500μl 1% Sigamcell (suspended in 0.1M pH5.2 acetate buffer containing 0.1M sodium chloride)→preheat in 45℃ water bath for 5 minutes→add appropriate amount of enzyme solution, react in 45℃ water bath for 8 minutes→add 40μg/ml Glucose DNS reagent 0.5ml → boil water bath for 5 minutes, cool in cold water, add 0.5ml double distilled water → read the light absorption value at 540nm.
微晶纤维素(Sigmacell)水解活力定义为在上述条件下,每分钟水解生成1μmol葡萄糖还原当量所需的酶量为1个单位(unit)。The hydrolytic activity of microcrystalline cellulose (Sigmacell) is defined as 1 unit (unit) of enzyme required to hydrolyze 1 μmol of glucose reducing equivalent per minute under the above conditions.
5.3木聚糖水解活力测定5.3 Determination of xylan hydrolysis activity
木聚糖水解活力测定采用可溶性木聚糖为底物。取木聚糖加水搅拌充分后,得到木聚糖的悬浊液,将该悬浊液离心,取上清冷冻干燥,即得到可溶性木聚糖。The determination of xylan hydrolysis activity uses soluble xylan as the substrate. After the xylan is added with water and fully stirred, a xylan suspension is obtained, the suspension is centrifuged, and the supernatant is freeze-dried to obtain the soluble xylan.
500μl 1%可溶性木聚糖(溶解于含0.1M氯化钠的0.1M pH5.2醋酸缓冲液中)?45℃水浴预热5分钟→加入适量酶液,45℃水浴反应8分钟→加入含40μg/ml葡萄糖的DNS试剂0.5ml→沸水浴5分钟,冷水冷却,补入0.5ml双蒸水→读取540nm处光吸收值。500 μl 1% soluble xylan (dissolved in 0.1M pH5.2 acetate buffer containing 0.1M sodium chloride)? Preheat in water bath at 45°C for 5 minutes → add appropriate amount of enzyme solution, react in water bath at 45°C for 8 minutes → add 0.5ml of DNS reagent containing 40μg/ml glucose → bath in boiling water for 5 minutes, cool in cold water, add 0.5ml of double distilled water → read Absorption value at 540nm.
木聚糖水解活力定义为在上述条件下,每分钟水解生成1μmol葡萄糖还原当量所需的酶量为1个单位(unit)。The hydrolysis activity of xylan is defined as 1 unit (unit) of enzyme required to hydrolyze 1 μmol of glucose reducing equivalent per minute under the above conditions.
5.4内切-β-1,4-葡聚糖酶水解活力测定5.4 Determination of endo-β-1,4-glucanase hydrolysis activity
200μl 1%羧甲基纤维素钠(溶解于含0.1M氯化钠的0.05M pH5.2醋酸缓冲液中)→45℃水浴预热5分钟→加入适量酶液,45℃水浴反应8分钟→加入含40μg/ml葡萄糖的DNS试剂0.5ml→沸水浴5分钟,冷水冷却,补入0.5ml双蒸水→读取540nm处光吸收值。200μl 1% sodium carboxymethylcellulose (dissolved in 0.05M pH5.2 acetate buffer containing 0.1M sodium chloride)→preheat in water bath at 45°C for 5 minutes→add appropriate amount of enzyme solution, react in water bath at 45°C for 8 minutes→ Add 0.5ml of DNS reagent containing 40μg/ml glucose → bath in boiling water for 5 minutes, cool in cold water, add 0.5ml of double distilled water → read the absorbance at 540nm.
5.5水解干稻草活力测定5.5 Determination of Vitality of Hydrolyzed Dried Rice Straw
500μl干稻草悬浮液(含干稻草150mg,悬浮于含0.1M氯化钠的0.05MpH5.2醋酸缓冲液中)→45℃水浴预热5分钟→加入18μg外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶,45℃水浴反应40分钟→加入含40μg/ml葡萄糖的DNS试剂0.5ml→沸水浴5分钟,冷水冷却,补入0.5ml双蒸水 读取540nm处光吸收值。然后计算还原糖生成量。500μl dry rice straw suspension (containing 150mg dry rice straw, suspended in 0.05M pH5.2 acetate buffer containing 0.1M sodium chloride) → preheat in water bath at 45°C for 5 minutes → add 18μg exo-β-1,4-glucose Glycanase/endo-β-1,4-xylanase, react in water bath at 45°C for 40 minutes → add 0.5ml of DNS reagent containing 40μg/ml glucose → bath in boiling water for 5 minutes, cool in cold water, add 0.5ml double Distilled water Read the absorbance at 540nm. Then calculate the amount of reducing sugar produced.
在以上条件下,以稻草为底物该酶的比活力为3.18国际单位。Under the above conditions, the specific activity of the enzyme was 3.18 international units with rice straw as the substrate.
测试结果总结于表1。The test results are summarized in Table 1.
表1:福寿螺纤维素外切酶与文献报道的外切酶的活力比较
##Sigmacell和Avicel都是Sigma公司的微晶纤维素商品名。98年后的商品目录已不再出现Avicel,只有Sigmacell## Sigmacell and Avicel are both Sigma's trade names for microcrystalline cellulose. After 1998, Avicel no longer appears in the product catalog, only Sigmacell
#定义:每分钟水解微晶纤维素(Sigmacell)或聚木糖(birchwood)产生1μmol简单糖为1个U。#Definition: 1 μmol of simple sugar produced by hydrolysis of microcrystalline cellulose (Sigmacell) or polyxylan (birchwood) per minute is 1 U.
实施例6Example 6
氯离子对外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活力的影响Effect of Chloride Ions on Exo-β-1,4-Glucanase/Endo-β-1,4-Xylanase Activity
在含有不同浓度氯离子的反应体系中测定外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活力,研究氯离子对外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶活力的影响。Exo-β-1,4-glucanase/endo-β-1,4-xylanase activity was measured in reaction systems containing different concentrations of chloride ions to study the exo-β-1, Effect of 4-glucanase/endo-β-1,4-xylanase activity.
结果如图3所示,氯离子对酶的内切-β-1,4-木聚糖酶活力无明显影响,而对外切-β-1,4-葡聚糖酶活力有明显的激活作用,且为外切-β-1,4-葡聚糖酶活力所必需。The results are shown in Figure 3. Chloride ions have no significant effect on the endo-β-1,4-xylanase activity of the enzyme, but have a significant activation effect on the exo-β-1,4-glucanase activity , and is necessary for exo-β-1,4-glucanase activity.
在本发明提及的所有文献都在本申请中引用作为参考,就如同每一篇文献被单独引用作为参考那样。此外应理解,在阅读了本发明的上述讲授内容之后,本领域技术人员可以对本发明作各种改动或修改,这些等价形式同样落于本申请所附权利要求书所限定的范围。All documents mentioned in this application are incorporated by reference in this application as if each were individually incorporated by reference. In addition, it should be understood that after reading the above teaching content of the present invention, those skilled in the art can make various changes or modifications to the present invention, and these equivalent forms also fall within the scope defined by the appended claims of the present application.
序列表Sequence Listing
<110>中国科学院生物化学与细胞生物学研究所<110>Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences
<120>新的外切-β-1,4-葡聚糖酶/内切-β-1,4-木聚糖酶及其应用<120> New exo-β-1,4-glucanase/endo-β-1,4-xylanase and its application
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<212>DNA<212>DNA
<213>引物<213> Primer
<400>8<400>8
atgacaatgg ctacaac 17atgacaatgg ctacaac 17
<210>9<210>9
<211>13<211>13
<212>DNA<212> DNA
<213>引物<213> Primer
<400>9<400>9
acatcccagt gct 13acatccccagt gct 13
<210>10<210>10
<211>19<211>19
<212>DNA<212>DNA
<213>引物<213> Primer
<400>10<400>10
gagccttgac ccagttctg 19gagccttgac ccagttctg 19
<210>11<210>11
<211>22<211>22
<212>DNA<212>DNA
<213>引物<213> Primer
<400>11<400>11
accgcccagt tgtagtgctg gt 22accgcccagt tgtagtgctg gt 22
<210>12<210>12
<211>37<211>37
<212>DNA<212>DNA
<213>引物<213> Primer
<400>12<400>12
ggcctgcagt cgactagtac tttttttttt ttttttt 37ggcctgcagt cgactagtac tttttttttt ttttttt 37
<210>13<210>13
<211>20<211>20
<212>DNA<212>DNA
<213>引物<213> Primer
<400>13<400>13
ggcctgcagt cgactagtac 20ggcctgcagt cgactagtac 20
<210>14<210>14
<211>21<211>21
<212>DNA<212>DNA
<213>引物<213> Primer
<400>14<400>14
caggctgacc agaatccact a 21caggctgacc agaatccact a 21
<210>15<210>15
<211>20<211>20
<212>DNA<212>DNA
<213>引物<213> Primer
<400>15<400>15
ttcaacttta ttgccctctg 20ttcaacttta ttgccctctg 20
Claims (15)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CNB021372837A CN1238501C (en) | 2002-09-29 | 2002-09-29 | Novel externally tangent-beta-1,4-glucanase/internally tangent-beta-1,4-xylanase and application thereof |
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CNB021372837A CN1238501C (en) | 2002-09-29 | 2002-09-29 | Novel externally tangent-beta-1,4-glucanase/internally tangent-beta-1,4-xylanase and application thereof |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CN1485426A CN1485426A (en) | 2004-03-31 |
| CN1238501C true CN1238501C (en) | 2006-01-25 |
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CNB021372837A Expired - Fee Related CN1238501C (en) | 2002-09-29 | 2002-09-29 | Novel externally tangent-beta-1,4-glucanase/internally tangent-beta-1,4-xylanase and application thereof |
Country Status (1)
| Country | Link |
|---|---|
| CN (1) | CN1238501C (en) |
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN101250512B (en) * | 2008-04-17 | 2010-04-14 | 上海交通大学 | Biomimetic affinity purification method for endoxylanase |
Families Citing this family (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN101310017B (en) * | 2005-11-16 | 2013-03-20 | 诺维信公司 | Polypeptides having endoglucanase activity and polynucleotides encoding same |
| CN101058794B (en) * | 2007-04-09 | 2010-08-04 | 重庆理工大学 | Method for constructing cellulase gene-transferred Saccharomyces cerevisiae |
| KR101472993B1 (en) * | 2013-08-20 | 2014-12-18 | 한국생명공학연구원 | Novel xylanase containing a novel alkali resistance glycoside hydrolase family, GH family 10 from Microbacterium sp. strain HY-17 |
| CN107988186A (en) * | 2017-12-06 | 2018-05-04 | 南京林业大学 | A kind of Cold tolerance endo beta-1,4-glucanase and its expressing gene and application |
-
2002
- 2002-09-29 CN CNB021372837A patent/CN1238501C/en not_active Expired - Fee Related
Cited By (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN101250512B (en) * | 2008-04-17 | 2010-04-14 | 上海交通大学 | Biomimetic affinity purification method for endoxylanase |
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| Publication number | Publication date |
|---|---|
| CN1485426A (en) | 2004-03-31 |
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