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CN113801926A - Freeze-drying protective agent for molecular detection reagent and application thereof - Google Patents

Freeze-drying protective agent for molecular detection reagent and application thereof Download PDF

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CN113801926A
CN113801926A CN202111125384.6A CN202111125384A CN113801926A CN 113801926 A CN113801926 A CN 113801926A CN 202111125384 A CN202111125384 A CN 202111125384A CN 113801926 A CN113801926 A CN 113801926A
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molecular detection
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detection reagent
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CN113801926B (en
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温云飞
余文博
万慧婷
石炜菁
姜文彬
赵美青
冯莉
周玭
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Hubei Haizhuo Biotechnology Co ltd
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
    • FMECHANICAL ENGINEERING; LIGHTING; HEATING; WEAPONS; BLASTING
    • F26DRYING
    • F26BDRYING SOLID MATERIALS OR OBJECTS BY REMOVING LIQUID THEREFROM
    • F26B5/00Drying solid materials or objects by processes not involving the application of heat
    • F26B5/04Drying solid materials or objects by processes not involving the application of heat by evaporation or sublimation of moisture under reduced pressure, e.g. in a vacuum
    • F26B5/06Drying solid materials or objects by processes not involving the application of heat by evaporation or sublimation of moisture under reduced pressure, e.g. in a vacuum the process involving freezing

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Abstract

The invention discloses a freeze-drying protective agent of a molecular detection reagent and application thereof, wherein the freeze-drying protective agent comprises 80-120 mg/mL of trehalose, 80-120 mg/mL of sucrose, 2-5 wt% of mannitol, 3-7 mmol/L of dextran, 0.5-6 mg/mL of polylactic acid-glycolic acid copolymer, 5-20 mg/mL of polylysine, 0.7-0.7 wt% of tween-800.3, 0.05-0.25 mg/mL of dithiothreitol and 5-20 mg/mL of vitamin combination. The freeze-drying protective agent provided by the invention can be prepared together with components required by fluorescent PCR (polymerase chain reaction), and is freeze-dried to prepare the molecular detection reagent, so that the molecular detection reagent can be transported and stored at normal temperature, and the application range is wide.

Description

Freeze-drying protective agent for molecular detection reagent and application thereof
Technical Field
The invention belongs to the technical field of biomolecule detection, and particularly relates to a freeze-drying protective agent of a molecular detection reagent and application thereof.
Background
Nucleic acid diagnosis is a method for diagnosing human states and diseases by analyzing the functions of nucleic acids from the level of nucleic acid structure, replication, transcription or translation by directly probing the existence state or defects of nucleic acids using the theories and techniques of molecular biology. Its target molecule is DNA or RNA, reflecting the structure and function of nucleic acid. The detected gene includes endogenous gene for diagnosing the presence of pathological changes in the gene and exogenous gene for diagnosing the presence of pathogen infection.
The Polymerase Chain Reaction (PCR) is a molecular biology technique for amplifying specific DNA fragments, and can be regarded as the special replication of biomolecules in vitro, and the biggest characteristic of the PCR is that trace nucleic acid can be greatly increased. Has the advantages of high sensitivity, strong specificity and the like, and is widely applied to the field of nucleic acid diagnosis at present.
The existing PCR amplification reagent is basically in a liquid state, components such as DNA polymerase, dNTP, primers, probes and the like of the PCR amplification reagent need to be stored in a freezing environment at the temperature of-20 ℃, repeated freezing and thawing has certain influence on the performance of the reagent, and the low-temperature storage of the reagent has higher requirements on the transportation, storage, use processes and the like. In addition, the liquid detection reagent needs cold chain transportation, the transportation cost is high, and the performance of the reagent is easily reduced due to improper storage temperature.
The freeze drying technology is a novel efficient drying technology which enables solid ice which is frozen in a mixture to be directly sublimated into a gas state without melting into liquid water, finally removes water and retains other effective components. Because the stability of the bioactive raw material in the solid dry powder state is far higher than that in the liquid state, the long-term storage and stable transportation of each component in the reaction reagent system at room temperature can be realized through freeze-drying dehydration treatment.
The defects of the current freeze-drying process of the diagnostic reagent are as follows: 1) the freeze-drying time is too long, and generally more than 30 hours are needed; 2) the enzyme activity loss is serious after freeze-drying, the amplification efficiency is reduced, the detection sensitivity is reduced, and the like; 3) the freeze-dried product is easy to collapse at the later stage; 4) additives such as lyoprotectants inhibit subsequent amplification reactions and the like.
Therefore, there is a need for a lyoprotectant for molecular detection reagents and applications thereof.
Disclosure of Invention
The present invention is directed to a lyoprotectant for molecular detection reagents and applications thereof, which at least solve one of the problems described in the prior art.
The first purpose of the invention is to provide a molecular detection lyoprotectant, which comprises the following components in concentration: 80-120 mg/mL of trehalose, 80-120 mg/mL of sucrose, 2-5 wt% of mannitol, 3-7 mmol/L of dextran, 0.5-6 mg/mL of polylactic acid-glycolic acid copolymer, 5-20 mg/mL of polylysine, 0.7 wt% of tween-800.3 and 0.05-0.25 mg/mL of dithiothreitol.
Further, the components are as follows: trehalose 100mg/mL, sucrose 100mg/mL, mannitol 4 wt%, dextran 5mmol/L, polylactic acid-glycolic acid copolymer 4mg/mL, polylysine 10mg/mL, tween-800.5 wt%, dithiothreitol 0.15 mg/mL.
Further, the components also comprise 5-20 mg/mL of vitamin combination, and the vitamin combination comprises one or more of vitamin B, vitamin C, vitamin D and vitamin K.
The second purpose of the invention is to provide a molecular detection reagent, which comprises a molecular detection system and the molecular detection lyoprotectant. Further, the molecular detection system comprises hot start Taq enzyme, UNG enzyme and dNTP. Preferably, the molecular detection system further comprises a reverse transcription MMLV enzyme, a primer, a probe and a buffer.
The invention also provides a freeze-drying protection method of the molecular detection reagent, which comprises the following steps:
1) preparing a molecular detection system and a freeze-drying protective agent to obtain a molecular detection reagent;
2) placing the molecular detection reagent at a temperature of-30 to-20 ℃ for pre-freezing for 1 to 3 hours, and then cooling to-50 to-40 ℃ at a speed of 1.0 to 1.5 ℃/min for 1 to 3 hours;
3) and (3) placing the frozen molecular detection reagent in a vacuum environment of 5-50 Pa for processing for 1-3 h, raising the temperature to-40-35 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 4-7 h, raising the temperature to-30-25 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 3-5 h, and raising the temperature of the PCR amplification reagent to 20-30 ℃ to obtain the freeze-dried PCR amplification reagent.
The invention also aims to provide the molecular detection reagent prepared by the freeze-drying protection method.
Another object of the present invention is to provide the use of the above molecular detection reagent in fluorescence PCR detection. The method can perform fluorescent PCR amplification detection aiming at nucleic acids of different targets to obtain a molecular detection result.
The freeze-drying protective agent provided by the invention can be prepared together with components required by fluorescence PCR, and can also be matched with any necessary components required by PCR detection, and freeze-drying is carried out to prepare a PCR amplification reagent; the PCR amplification reagent can be transported and stored at normal temperature, and only needs ddH when in use2And O redissolving, and then adding the sample nucleic acid. Compared with the prior art, the PCR amplification reagent has the following advantages: 1) normal temperature storage and transportation are realized, and the transportation cost is reduced; 2) can be matched with various primer probes for freeze-drying, and has strong applicability.
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FIG. 1 is a schematic diagram showing the freeze-dried and protected appearance of the amplification reagent of the present invention.
Detailed Description
In order to make the objects, technical solutions and advantageous effects of the present invention more apparent, the present invention is further described in detail with reference to the following detailed description. It should be understood that the detailed description and specific examples, while indicating the preferred embodiment of the invention, are intended for purposes of illustration only and are not intended to limit the scope of the invention.
The freeze-drying protective agent is used for protecting the activity of specific enzymes and other components in a molecular detection reagent from being damaged, a good freeze-drying protective agent should have multiple protective characteristics, and any single protective agent cannot have all the protective characteristics based on the molecular structure and the performance of active substances such as the enzymes, so that the use of the protective agent with multiple components is considered to maintain the activity of various components.
The invention provides a freeze-drying protective agent of a molecular detection reagent, which comprises the following components in concentration: 80-120 mg/mL of trehalose, 80-120 mg/mL of sucrose, 2-5 wt% of mannitol, 3-7 mmol/L of dextran, 0.5-6 mg/mL of polylactic acid-glycolic acid copolymer, 5-20 mg/mL of polylysine, 0.7 wt% of tween-800.3, 0.05-0.25 mg/mL of dithiothreitol and 5-20 mg/mL of vitamin combination, wherein the vitamin combination comprises one or more of vitamin B, vitamin C, vitamin D and vitamin K.
Preferably, among the above components: trehalose 100mg/mL, sucrose 100mg/mL, mannitol 4 wt%, dextran 5mmol/L, polylactic acid-glycolic acid copolymer 4mg/mL, polylysine 10mg/mL, tween-800.5 wt%, dithiothreitol 0.15mg/mL, vitamin combination 15 mg/mL.
The principle of selecting the components is as follows:
trehalose and sucrose are non-reducing sugars that can prevent changes in the secondary structure of proteins, because they are rich in hydroxyl groups that can form a putative hydrated film with the enzyme surface, which can protect the bonding sites of hydrogen bonds from direct exposure to the surrounding environment, prevent denaturation of proteins due to lyophilization, and contribute significantly to the stretching and aggregation of protein polypeptide chains during lyophilization processing and during storage. Mannitol acts as a backbone, amorphous mannitol contributes to protein stability, and amorphous structures below 1% prevent aggregation of protein molecules. Dextran can raise the glass transition temperature of the product and prevent the enzyme activity induced by product collapse from being destroyed. The polylactic acid-glycolic acid copolymer as a cryoprotectant of the enzyme has higher glass transition temperature, and the amorphous structure of the polylactic acid-glycolic acid copolymer can also play a role in dispersing to prevent the aggregation of the enzyme. The polylysine is epsilon-polylysine, has good bactericidal ability and thermal stability, and can also improve the glass transition temperature. Dithiothreitol, as a small-molecule organic reducing agent, can reduce the redox potential of a reaction system in the freeze-drying process and after freeze-drying and thawing, prevent intra-molecular or intermolecular disulfide bonds of proteins formed between cysteines in the proteins, and can not reduce disulfide bonds embedded in the protein structure (inaccessible to a solvent), thereby well ensuring that the properties of the enzyme are not changed. Meanwhile, the vitamin combination can utilize the spatial structure of self small molecules to be matched with trehalose and sucrose, completely block the functional domain of zymoprotein, improve the stability of zymoprotein in the freeze-drying and storage processes, and protect the activity of zymoprotein serving as a main component through the synergistic effect of the components.
The invention also provides a freeze-drying protection method of the molecular detection reagent, which comprises the following steps:
s1, preparing a molecular detection system and a freeze-drying protective agent to obtain a molecular detection reagent;
s2, placing the molecular detection reagent at a temperature of-30 to-20 ℃ for pre-freezing for 1 to 3 hours, and then cooling to-50 to-40 ℃ at a speed of 1.0 to 1.5 ℃/min for 1 to 3 hours;
s3, starting a vacuum pump, placing the frozen molecular detection reagent in a vacuum environment of 5-50 Pa for processing for 1-3 h, raising the temperature to-40-35 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 4-7 h, raising the temperature to-30-25 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 3-5 h, and raising the temperature of the PCR amplification reagent to 20-30 ℃ to obtain the freeze-dried PCR amplification reagent.
In the present invention, the molecular detection system comprises reagents for fluorescent PCR detection of nucleic acid molecules, such as hot-start Taq enzyme, UNG enzyme, reverse-transcriptase MMLV enzyme, dNTP, and primers, probes and buffers.
The molecular detection reagent obtained by the freeze-drying protection method is subpackaged into eight connecting tubes, the appearance is shown in figure 1, and the freeze-drying shape is good.
Example 1
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 6mg/mL of polylactic acid-glycolic acid copolymer, 5mg/mL of polylysine, 800.7 wt% of tween, 0.15mg/mL of dithiothreitol and 5mg/mL of vitamin B.
Example 2
Trehalose 100mg/mL, sucrose 100mg/mL, mannitol 4 wt%, dextran 5mmol/L, polylactic acid-glycolic acid copolymer 4mg/mL, polylysine 10mg/mL, tween-800.5 wt%, dithiothreitol 0.15mg/mL, vitamin B5 mg/mL, vitamin C10 mg/mL.
Example 3
80mg/mL of trehalose, 80mg/mL of sucrose, 5 wt% of mannitol, 3mmol/L of dextran, 0.5mg/mL of polylactic acid-glycolic acid copolymer, 20mg/mL of polylysine, 800.3 wt% of tween, 0.15mg/mL of dithiothreitol, 5mg/mL of vitamin B, 10mg/mL of vitamin C and 5mg/mL of vitamin D.
Example 4
Trehalose 90mg/mL, sucrose 110mg/mL, mannitol 3 wt%, dextran 6mmol/L, polylactic acid-glycolic acid copolymer 5mg/mL, polylysine 8mg/mL, tween-800.5 wt%, dithiothreitol 0.15mg/mL, vitamin B5 mg/mL, vitamin C5 mg/mL, vitamin D5 mg/mL, vitamin K5 mg/mL.
Comparative example 1
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 6mg/mL of polylactic acid-glycolic acid copolymer, 0.15mg/mL of tween-800.7, 0.15mg/mL of dithiothreitol and 5mg/mL of vitamin B.
Comparative example 2
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 5mg/mL of polylysine, 78 wt% of tween-800.7, 0.15mg/mL of dithiothreitol, 5mg/mL of vitamin B and 10mg/mL of vitamin C.
Comparative example 3
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 800.7 wt% of tween, 0.15mg/mL of dithiothreitol, 5mg/mL of vitamin B, 10mg/mL of vitamin C and 5mg/mL of vitamin D.
Comparative example 4
Trehalose 90mg/mL, sucrose 110mg/mL, mannitol 3 wt%, dextran 6mmol/L, polylactic acid-glycolic acid copolymer 5mg/mL, polylysine 8mg/mL, tween-800.5 wt%, dithiothreitol 0.15mg/mL, vitamin B10 mg/mL, vitamin C10 mg/mL, vitamin D10 mg/mL, vitamin K10 mg/mL.
Comparative example 5
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 6mg/mL of polylactic acid-glycolic acid copolymer, 5mg/mL of polylysine, 78 wt% of tween-800.7 and 0.15mg/mL of dithiothreitol.
Comparative example 6
80mg/mL of trehalose, 120mg/mL of sucrose, 2 wt% of mannitol, 7mmol/L of dextran, 6mg/mL of polylactic acid-glycolic acid copolymer, 5mg/mL of polylysine, 800.7 wt% of tween, 5mg/mL of vitamin B and 10mg/mL of vitamin C.
Examples of the experiments
The freeze-drying effect of the molecular detection reagent prepared according to the freeze-drying protection method provided by the invention in the above examples 1-4 is tested by taking a Hepatitis B Virus (HBV) nucleic acid measurement system as an experimental example, and the test stages are respectively from appearance, re-solubility and accelerated stability: the test performance was examined at 45 ℃ after 3 days, 9 days, 15 days, and 21 days. And in addition, under the storage condition of 2-8 ℃, positive standard products are detected in 6, 12, 15, 18, 21, 24 and 27 months respectively, and the Ct value change of the positive standard products is observed by examining the real-time stability effect brought by the freeze-dried detection reagent.
According to the PCR amplification system: 1X amplification buffer, 0.05U/. mu. L, UNG enzyme, 0.0003U/. mu. L, dNTP 220. mu. mol/L hot start Taq enzyme lyophilized reagents were prepared as described in examples 1-4 and comparative examples 1-6, respectively. Positive standard substance: initial viral content 5.8X 103copy/ml, stepone plus instrument determination of Ct value 24.32.
1. Appearance and resolubility
The components of the freeze-drying agent in the components of examples 1-4 are freeze-dried with a PCR amplification system, two portions of the detection reagent obtained by freeze-drying are filled in eight connecting tubes in each example, the freeze-dried state is shown in figure 1, and it can be seen that the freeze-dried reagents provided in examples 1-4 are all in a better loose state. The lyophilized reagents of examples 1 to 4 and comparative examples 1 to 6 were taken in eight-connected tubes and added to ddH2And O, re-dissolving, and calculating the total dissolving time. The appearance and re-solubility indices are shown in Table 1.
Table 1:
Figure BDA0003275583690000081
2. accelerated stability test
The results of the tests of examples 1 to 4 and comparative examples 1 to 3 at 45 ℃ after 3 days, 9 days, 15 days and 21 days are shown in Table 2.
Table 2:
Figure BDA0003275583690000082
the acceptance criterion is determined by the Ct value of less than or equal to 1.60 (according to the stipulation of the standard nucleic acid amplification detection reagent (kit) YY/T1182-2010, the absolute deviation does not exceed 0.5 log-order when detecting the standard substance or the reference substance), as can be seen from Table 2, examples 1-4 all meet the requirements. However, it is preferable that the Ct value in example 2 is the smallest as a post-estimation value. Comparative examples 1-3 exhibited significant failures in Ct value post-push values after 15 days or 21 days, respectively. It can be seen that the freeze-dried agents of comparative examples 1 to 3 respectively show poor detection accuracy after being reconstituted under the storage condition of 45 ℃, and thus show poor high-temperature resistance in the absence of the polylactic acid-glycolic acid copolymer and/or the polylysine. Comparative example 4 when the vitamin combination content was increased relative to example 4, there was no significant change in Ct values; however, in comparative example 5, when the vitamin content is reduced compared with that in example 1, the Ct value is obviously increased after the prediction, and it can be seen that the vitamin is helpful for improving the stability of the enzyme in the processes of freeze-drying and storage. Comparative example 6 Ct values were significantly increased after extrapolation when dithiothreitol was not added, which is seen to help improve enzyme stability during lyophilization and storage.
3. Detection of Positive Standard
The test results of examples 1 to 4 and comparative examples 1 to 6 after 6, 12, 15, 18, 21, 24 and 27 months under the storage condition of 2 to 8 ℃ are shown in Table 3. And (5) determining that the Ct value is qualified within the range by the criterion that the Ct value is less than or equal to 1.60 after being deduced according to the acceptable standard.
Table 3:
Figure BDA0003275583690000091
Figure BDA0003275583690000101
the acceptance criterion is based on the Ct value of less than or equal to 1.60, and as can be seen from Table 3, the detection results of the examples 1 to 4 meet the requirements within 24 months under the storage condition of 2 to 8 ℃. However, the component in example 2 is preferable because the post-prediction value of the Ct value in the positive standard for detection after 27 months in example 2 is the smallest. Also, comparative examples 1 to 3 and comparative example 6 each exhibited a significant failure in the Ct value extrapolated after 21 months. It can be seen that the freeze-dried agents of comparative examples 1 to 3 and 6 can be stored for only 18 months under the storage condition of 2 to 8 ℃, which is obviously shorter than that of examples 1 to 4, particularly example 2, and therefore, the storage time of the freeze-dried agent can be obviously shortened even at a lower temperature in the absence of the polylactic acid-glycolic acid copolymer, the polylysine and the dithiothreitol.
The lyoprotectant has been described in detail with reference to specific embodiments thereof, but the description of the embodiments is illustrative and not restrictive, and several examples may be cited within the limits thereof, so that variations and modifications within the spirit and scope of the present technology should be considered within the scope of the present invention.

Claims (9)

1. A molecular detection freeze-drying protective agent is characterized by comprising the following components in concentration: 80-120 mg/mL of trehalose, 80-120 mg/mL of sucrose, 2-5 wt% of mannitol, 3-7 mmol/L of dextran, 0.5-6 mg/mL of polylactic acid-glycolic acid copolymer, 5-20 mg/mL of polylysine, 0.7 wt% of tween-800.3 and 0.05-0.25 mg/mL of dithiothreitol.
2. The lyoprotectant of claim 1, wherein said component is: trehalose 100mg/mL, sucrose 100mg/mL, mannitol 4 wt%, dextran 5mmol/L, polylactic acid-glycolic acid copolymer 4mg/mL, polylysine 10mg/mL, tween-800.5 wt%, dithiothreitol 0.15 mg/mL.
3. The lyoprotectant according to claim 1, further comprising 5-20 mg/mL of a vitamin composition comprising one or more of vitamin B, vitamin C, vitamin D, and vitamin K.
4. A molecular assay reagent comprising a molecular assay system, further comprising the molecular assay lyoprotectant of any of claims 1-2.
5. The molecular detection reagent of claim 4, wherein the molecular detection system comprises a hot start Taq enzyme, a UNG enzyme and a dNTP.
6. The molecular detection reagent of claim 5, wherein the molecular detection system further comprises a reverse transcriptase MMLV enzyme, primers, probes, and buffers.
7. A method for protecting a molecular detection reagent from lyophilization according to any one of claims 4 to 6, comprising the steps of:
1) preparing a molecular detection system and a freeze-drying protective agent to obtain a molecular detection reagent;
2) placing the molecular detection reagent at a temperature of-30 to-20 ℃ for pre-freezing for 1 to 3 hours, and then cooling to-50 to-40 ℃ at a speed of 1.0 to 1.5 ℃/min for 1 to 3 hours;
3) and (3) placing the frozen molecular detection reagent in a vacuum environment of 5-50 Pa for processing for 1-3 h, raising the temperature to-40-35 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 4-7 h, raising the temperature to-30-25 ℃ at the speed of 0.3-0.8 ℃/min, keeping the temperature for 3-5 h, and raising the temperature of the PCR amplification reagent to 20-30 ℃ to obtain the freeze-dried PCR amplification reagent.
8. A molecular detection reagent prepared by the lyophilization protection method according to claim 7.
9. Use of the molecular detection reagent according to any one of claims 4 to 6 or 8 in fluorescence PCR detection.
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