CN111424086A - Biomarkers, applications and detection kits for gastric cancer diagnosis and prognosis evaluation - Google Patents
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Abstract
Description
技术领域technical field
本发明属于生物医学领域,具体涉及一种用于胃癌诊断及预后评估的生物标记物、使用该标记物评估胃癌预后的方法及诊断试剂盒的应用,特别是涉及肿瘤浸润免疫细胞因子IL23A作为胃癌诊治及预后评估生物标记物及诊断试剂盒的应用。The invention belongs to the field of biomedicine, and in particular relates to a biomarker for gastric cancer diagnosis and prognosis evaluation, a method for evaluating gastric cancer prognosis using the marker, and the application of a diagnostic kit, in particular to tumor-infiltrating immune cytokine IL23A as gastric cancer Application of biomarkers and diagnostic kits for diagnosis, treatment and prognosis assessment.
背景技术Background technique
胃癌(GC)是全球最普遍的恶性肿瘤之一,在全球因为癌症引起的死亡人数中胃癌排名第二。据国际癌症研究机构数据显示,全球每年新增胃癌病例数约100万例,其中死亡病例超过80万例。随着治疗和诊断技术的进步,多种治疗和诊断方法不断出现,在胃癌临床诊断和治疗方面取得很大的改善,但由于癌症的异质性及个体差异,原发性胃癌切除后易产生局部复发或转移,几乎50%的患者经历了术后原位复发、异位转移和化疗耐药的反应。大多数晚期胃癌患者其5年相对生存率仍然仅限于20%。因此及时判断胃癌患者的病情,了解患者预后生存情况,有助于对不同患者采取个性化治疗方案。所以,寻找简便有效的生物标志物用于胃癌患者的预后诊断对于临床治疗有着十分重要的指导意义。Gastric cancer (GC) is one of the most common malignant tumors in the world, and it ranks second in the number of deaths due to cancer in the world. According to the International Agency for Research on Cancer, there are about 1 million new cases of gastric cancer every year in the world, of which more than 800,000 die. With the advancement of treatment and diagnosis technology, a variety of treatment and diagnosis methods continue to emerge, and great improvements have been made in the clinical diagnosis and treatment of gastric cancer. However, due to the heterogeneity and individual differences of cancer, primary gastric cancer is prone to Local recurrence or metastasis, almost 50% of patients experienced postoperative in situ recurrence, ectopic metastasis and chemotherapy-resistant response. The 5-year relative survival rate of most advanced gastric cancer patients is still limited to 20%. Therefore, it is helpful to timely determine the condition of gastric cancer patients and understand the prognosis and survival of patients, which will help to take personalized treatment plans for different patients. Therefore, finding simple and effective biomarkers for the prognosis and diagnosis of gastric cancer patients has important guiding significance for clinical treatment.
肿瘤微环境(Tumor microenvironment,TME)是一个复杂的系统,主要包括细胞外基质,趋化因子,细胞因子和非肿瘤细胞。肿瘤浸润免疫细胞(Tumor infiltrating immunecell,TIIC)是TME中非肿瘤细胞的组成部分,在促进和抑制癌症生长方面具有关键作用。TIIC的功能和组成会根据机体的免疫状态而发生细微变化,它们是各种癌症类型中的独立预后因素。有研究在乳腺癌中发现存在TIIC的异质性浸润,包括T细胞,树突状细胞,巨噬细胞,嗜中性粒细胞和肥大细胞等。并且发现TIIC在结肠癌组织内的类型、密度和位置的差异,具有良好的预后价值。此外,Klintrup等在结肠癌患者中评估了总体炎症细胞反应和TIIC不同类型密度之间的关系。结果表明成熟的T细胞和树突状细胞、记忆T细胞在TIICs亚群中的高占比通常指示具有良好的预后,而免疫抑制调节性T细胞的上升则与结肠癌的预后不良相关。The tumor microenvironment (TME) is a complex system that mainly includes extracellular matrix, chemokines, cytokines and non-tumor cells. Tumor infiltrating immune cells (TIICs) are the components of non-tumor cells in the TME and play a key role in promoting and inhibiting cancer growth. The function and composition of TIICs vary subtly according to the body's immune status, and they are independent prognostic factors in various cancer types. Heterogeneous infiltration of TIICs, including T cells, dendritic cells, macrophages, neutrophils, and mast cells, has been found in breast cancer. And found differences in the type, density and location of TIIC in colon cancer tissue, which have good prognostic value. In addition, Klintrup et al evaluated the relationship between the overall inflammatory cell response and the density of different types of TIIC in colon cancer patients. The results showed that a high proportion of mature T cells and dendritic cells and memory T cells in a subset of TIICs generally indicates a favorable prognosis, while an increase in immunosuppressive regulatory T cells is associated with a poor prognosis in colon cancer.
白介素23A(IL23A)又称为IL23P19,该基因编码异二聚体细胞因子白介素23(IL23)的一个α亚基,和白介素12(IL12B)的p40亚基共同组成白介素23(IL23)。IL23优先作用于记忆CD4(+)T细胞,可激活转录激活因子STAT4,并刺激干扰素-γ(IFNG)的产生,在肿瘤免疫细胞浸润的环境下对抑制癌细胞扩散具有重要作用。此外,有研究表明,IL23A和巨噬细胞之间的相互作用对癌症的免疫治疗有重要影响。有研究表明低浓度的IL23A可以促进膀胱肿瘤的进展,而IL23A的高表达预后较好。类似的研究还包括高表达的IL23A可能会抑制胰腺癌的转移潜能,且与胰腺导管腺癌的长期生存有关。可见IL23A作为参与肿瘤浸润免疫细胞反应的重要因子,在抑制肿瘤发生发展中起着重要的桥梁、枢纽作用。Interleukin 23A (IL23A), also known as IL23P19, encodes an alpha subunit of the heterodimeric cytokine interleukin 23 (IL23), which together with the p40 subunit of interleukin 12 (IL12B) constitutes interleukin 23 (IL23). IL23 acts preferentially on memory CD4(+) T cells, activates the transcriptional activator STAT4, and stimulates the production of interferon-γ (IFNG), which plays an important role in inhibiting the spread of cancer cells in the context of tumor immune cell infiltration. In addition, studies have shown that the interaction between IL23A and macrophages has important implications for cancer immunotherapy. Studies have shown that low concentrations of IL23A can promote the progression of bladder tumors, and high expression of IL23A has a better prognosis. Similar studies have also included that high expression of IL23A may inhibit the metastatic potential of pancreatic cancer and is associated with long-term survival in pancreatic ductal adenocarcinoma. It can be seen that IL23A, as an important factor involved in the response of tumor-infiltrating immune cells, plays an important bridge and pivot role in inhibiting the occurrence and development of tumors.
目前已出现一些关于胃癌的预后诊断标志物的相关专利,包括申请号为201210549153.2的专利公开说明了DACT1在制备胃癌检测的试剂盒中的用途;申请号为201810749863.7的专利公开了通过检测PDLIM4基因的高表达,来对个体进行早期胃癌的诊断,等。但IL23A作为胃癌预后诊断标志物的应用尚未见报道。寻找更多高特异性和敏感性的分子标志物对胃癌辅助诊断和预后分析具有重要意义。At present, some related patents on prognostic diagnostic markers of gastric cancer have appeared, including the patent publication No. 201210549153.2, which describes the use of DACT1 in the preparation of a kit for the detection of gastric cancer; the patent No. 201810749863.7 discloses the detection of PDLIM4 gene High expression, to diagnose early gastric cancer in individuals, etc. However, the application of IL23A as a prognostic diagnostic marker for gastric cancer has not been reported yet. Finding more molecular markers with high specificity and sensitivity is of great significance for auxiliary diagnosis and prognostic analysis of gastric cancer.
现有技术的主要缺点:临床上判断胃癌病人预后的方法多通过术后定期复查和电话随访来了解病人的情况,较为被动且不利于病人病情的控制。为了实现更加精准和个体化的临床治疗,亟需发现更多可用于胃癌预后诊断和评估的生物标志物。The main disadvantage of the prior art is that the clinical method for judging the prognosis of gastric cancer patients is mostly to know the patient's condition through regular postoperative review and telephone follow-up, which is relatively passive and is not conducive to the control of the patient's condition. In order to achieve more precise and individualized clinical treatment, it is urgent to discover more biomarkers that can be used for the diagnosis and evaluation of gastric cancer prognosis.
IL23A是重要的细胞因子IL23的亚基,优先作用于记忆CD4(+)T细胞,可激活转录激活因子STAT4,并刺激干扰素-γ的产生,直接参与肿瘤免疫细胞浸润的多种炎症反应,对抑制癌细胞扩散具有重要作用,在抑制肿瘤发生、发展中起着重要的桥梁、枢纽作用,通过检测IL23A在胃癌病人癌组织中的表达情况,可以评估患者状态,判断其预后情况。IL23A is a subunit of the important cytokine IL23, which preferentially acts on memory CD4(+) T cells, activates the transcriptional activator STAT4, and stimulates the production of interferon-γ, which directly participates in various inflammatory responses of tumor immune cell infiltration. It plays an important role in inhibiting the spread of cancer cells, and plays an important bridge and pivot role in inhibiting the occurrence and development of tumors. By detecting the expression of IL23A in the cancer tissue of patients with gastric cancer, the status of the patients can be assessed and their prognosis can be judged.
发明内容SUMMARY OF THE INVENTION
本发明的目的就是为了克服上述现有技术存在的缺陷而提供一种用于胃癌诊断及预后评估的生物标记物及应用和检测试剂盒。The purpose of the present invention is to provide a biomarker, application and detection kit for gastric cancer diagnosis and prognosis evaluation in order to overcome the above-mentioned defects of the prior art.
本发明的目的可以通过以下技术方案来实现:一种用于胃癌诊治及预后评估的生物标记物,采用肿瘤浸润免疫细胞因子IL23A作为胃癌诊治及预后评估生物标记物。The object of the present invention can be achieved by the following technical solutions: a biomarker for gastric cancer diagnosis, treatment and prognosis evaluation, using tumor-infiltrating immune cytokine IL23A as a gastric cancer diagnosis, treatment and prognosis evaluation biomarker.
一种用于胃癌诊断及预后评估的生物标记物的应用,通过检测所述肿瘤浸润免疫细胞因子IL23A的相对表达水平来评估患者预后情况。The application of a biomarker for the diagnosis and prognosis evaluation of gastric cancer is to evaluate the prognosis of a patient by detecting the relative expression level of the tumor-infiltrating immune cytokine IL23A.
具体包括以下步骤:Specifically include the following steps:
(1)获取胃癌组织样本与正常组织样本的总RNA,并进行反转录获得cDNA;(1) Obtain the total RNA of gastric cancer tissue samples and normal tissue samples, and perform reverse transcription to obtain cDNA;
(2)设计并合成IL23A的qPCR引物;(2) Design and synthesize qPCR primers for IL23A;
(3)利用步骤(2)合成的引物对cDNA进行qPCR,采用相对定量法检测胃癌组织样本中IL23A的相对表达水平变化。(3) qPCR is performed on cDNA using the primers synthesized in step (2), and the relative expression level changes of IL23A in gastric cancer tissue samples are detected by relative quantitative method.
(4)分析胃癌患者IL23A表达量与生存期之间的关系,评估其表达水平对胃癌患者预后生存期的指示作用。(4) To analyze the relationship between the expression of IL23A and the survival time of gastric cancer patients, and to evaluate the indication effect of its expression level on the prognosis and survival time of gastric cancer patients.
步骤(1)中的胃癌组织样本与正常组织样本在液氮或-80℃保存。获取胃癌组织样本与正常组织样本的总RNA的方法为常规的方法,如采用TRIzol进行提取;反转录可采用PrimeScriptTMRT reagent试剂盒进行反转录。The gastric cancer tissue samples and normal tissue samples in step (1) are stored in liquid nitrogen or -80°C. The method for obtaining the total RNA of gastric cancer tissue samples and normal tissue samples is a conventional method, such as using TRIzol for extraction; reverse transcription can be performed using PrimeScript ™ RT reagent kit.
步骤(2)中qPCR引物为常规qPCR引物,包括如下qPCR引物序列:In step (2), the qPCR primers are conventional qPCR primers, including the following qPCR primer sequences:
步骤(2)所述胃癌组织样本中IL23A的相对表达水平变化通过以下方法进行计算:IL23A表达量的倍数变化=2的(-ΔΔCt)次幂,其中,ΔΔCt=ΔCt(胃癌样本)-ΔCt(对照组癌样本);The change in the relative expression level of IL23A in the gastric cancer tissue sample in step (2) is calculated by the following method: fold change of IL23A expression = 2 to the power of (-ΔΔCt), where ΔΔCt = ΔCt (gastric cancer sample) - ΔCt ( control group cancer samples);
ΔCt(胃癌样本)=Ct(胃癌样本中的IL23A)-Ct(胃癌样品中的内参基因GAPDH);ΔCt (gastric cancer samples)=Ct (IL23A in gastric cancer samples)-Ct (internal reference gene GAPDH in gastric cancer samples);
ΔCt(对照组样本)=Ct(对照组样本中的IL23A)-Ct(对照组样品中的内参基因GAPDH)。ΔCt (control sample)=Ct (IL23A in control sample)-Ct (internal reference gene GAPDH in control sample).
所述肿瘤浸润免疫细胞因子IL23A的相对表达水平的检测方法还包括通过检测IL23A基因mRNA表达水平;或通过使用抗IL23A蛋白的抗体特异性检测组织中IL23A蛋白表达水平的方法实现。The method for detecting the relative expression level of the tumor-infiltrating immune cytokine IL23A also includes detecting the expression level of IL23A gene mRNA; or by using an antibody against IL23A protein to specifically detect the expression level of IL23A protein in tissue.
所述的检测IL23A基因mRNA表达水平的方法包括RNA印迹分析法、原位杂交法或定制芯片法;The method for detecting IL23A gene mRNA expression level includes Northern blot analysis method, in situ hybridization method or custom chip method;
所述的使用抗IL23A蛋白的抗体特异性检测组织中IL23A蛋白表达水平的方法包括免疫组化法或免疫荧光法。The method for specifically detecting the expression level of IL23A protein in tissue using an antibody against IL23A protein includes immunohistochemical method or immunofluorescence method.
一种包含肿瘤浸润免疫细胞因子IL23A的检测试剂盒。A detection kit comprising the tumor-infiltrating immune cytokine IL23A.
提供肿瘤浸润免疫细胞因子IL23A作为胃癌诊断、预后评估标志物及其应用。IL23A是重要的细胞因子IL23的亚基,优先作用于记忆CD4(+)T细胞,直接参与肿瘤免疫细胞浸润的多种炎症反应,对抑制癌细胞扩散具有重要作用,研究表明,其表达量在人临床胃癌组织与癌旁组织中呈现显著差异,在胃癌组织中表现特异性高表达现象,这提示IL23A在癌症诊断中具有的标志物作用。同时,在胃癌组织中IL23A高表达的患者预后显著优于IL23A低表达的患者预后,且具有统计学差异,表明IL23A的表达量能够明确清楚地表征胃癌患者的预后情况。To provide tumor-infiltrating immune cytokine IL23A as a marker for gastric cancer diagnosis, prognosis evaluation and its application. IL23A is a subunit of the important cytokine IL23, which preferentially acts on memory CD4(+) T cells and directly participates in various inflammatory responses of tumor immune cell infiltration, and plays an important role in inhibiting the spread of cancer cells. There are significant differences between human clinical gastric cancer tissue and adjacent tissue, and a specific high expression phenomenon in gastric cancer tissue, which suggests that IL23A has a marker role in cancer diagnosis. At the same time, the prognosis of patients with high IL23A expression in gastric cancer tissue was significantly better than that of patients with low IL23A expression, and there was a statistical difference, indicating that the expression of IL23A can clearly and clearly characterize the prognosis of gastric cancer patients.
本发明通过肿瘤浸润免疫细胞因子IL23A的应用,可以从分子水平上实现胃癌风险等级的分级分层,准确、迅速地检测并评估胃癌病人的预后,方便在临床上对不同预后程度的患者进行分类治疗,有利于指导胃癌病人的个体化精准治疗,同时节约了医疗成本,具有较高的临床应用价值。Through the application of the tumor-infiltrating immune cytokine IL23A, the invention can realize the grading and stratification of the risk level of gastric cancer at the molecular level, accurately and rapidly detect and evaluate the prognosis of gastric cancer patients, and facilitate the clinical classification of patients with different degrees of prognosis It is beneficial to guide the individualized and precise treatment of gastric cancer patients, and at the same time saves medical costs, and has high clinical application value.
与现有技术相比,本发明具有如下的有益效果:Compared with the prior art, the present invention has the following beneficial effects:
1)本发明提供了一种用于评估胃癌预后诊断的新型肿瘤浸润免疫细胞因子标志物IL23A,首次发现相对于正常组织,其在胃癌肿瘤中呈特异性高表达现象,且其表达量高低与患者预后生存期密切相关,指示肿瘤免疫浸润相关因子IL23A可作为胃癌预后诊断标志物。1) The present invention provides a novel tumor-infiltrating immune cytokine marker IL23A for evaluating the prognosis and diagnosis of gastric cancer. It is found for the first time that compared with normal tissues, it is specifically highly expressed in gastric cancer tumors, and its expression level is similar to that of normal tissues. The prognosis and survival of patients are closely related, indicating that the tumor immune infiltration-related factor IL23A can be used as a prognostic and diagnostic marker for gastric cancer.
2)本发明提供了包含上述生物标志物的引物、检测方法、预后评估方式及诊断试剂盒。通过检测胃癌患者活检样品的IL23A的表达,可以快速、准确及清楚的判断胃癌病人的预后状况,为患者治疗方案的确定提供指导。2) The present invention provides primers, detection methods, prognostic assessment methods and diagnostic kits comprising the above-mentioned biomarkers. By detecting the expression of IL23A in biopsy samples of gastric cancer patients, the prognosis of gastric cancer patients can be quickly, accurately and clearly judged, and guidance for the determination of the patient's treatment plan can be provided.
3)本发明首次公开了IL23A作为胃癌预后标记物及检测标记物的应用,该标记物是胃癌肿瘤浸润免疫细胞中的重要因子,直接参与胃癌微环境中的多种免疫反应。实验证明它能够迅速、准确、方便地预测胃癌预后,从分子水平实现胃癌危险度的分级分期,大大提高胃癌预后检测及评估的敏感性和特异性。方便在临床上对预后程度不同的患者进行分类治疗,有利于指导胃癌病人的个体化精准治疗,同时节约了医疗成本,具有较高的临床应用价值。3) The present invention discloses for the first time the application of IL23A as a gastric cancer prognosis marker and detection marker, which is an important factor in gastric cancer tumor-infiltrating immune cells and directly participates in various immune responses in the gastric cancer microenvironment. Experiments have shown that it can quickly, accurately and conveniently predict the prognosis of gastric cancer, realize the grading and staging of gastric cancer risk from the molecular level, and greatly improve the sensitivity and specificity of gastric cancer prognosis detection and evaluation. It is convenient for clinically classifying and treating patients with different prognoses, which is helpful for guiding individualized and precise treatment of gastric cancer patients, and at the same time, it saves medical costs and has high clinical application value.
附图说明Description of drawings
图1为运用qPCR法对胃癌组织样本和对照组正常样本中IL23A的表达量差异分析图。Figure 1 shows the difference analysis of IL23A expression in gastric cancer tissue samples and normal samples from the control group by qPCR.
图2为对40对胃癌-癌旁组织进行组织芯片免疫组化染色,选择4对示例图如下所示,其中a-d为胃癌组织中IL23A表达的结果图,e-h为癌旁组织中IL23A表达的结果图。Figure 2 shows the tissue microarray immunohistochemical staining of 40 pairs of gastric cancer-paracancerous tissues. The selected 4 pairs are shown in the following figure, where a-d are the results of IL23A expression in gastric cancer tissues, and e-h are the results of IL23A expression in paracancerous tissues picture.
图3为运用组织芯片免疫组化技术对40对胃癌及癌旁组织中IL23A表达量分析图,其中圆点表示正常组织,方块表示胃癌组织。Figure 3 is a graph showing the expression of IL23A in 40 pairs of gastric cancer and adjacent tissues using tissue microarray immunohistochemistry, in which the circles represent normal tissues and the squares represent gastric cancer tissues.
图4为运用Kaplan-Meier生存曲线法对胃癌患者IL23A表达量与生存期之间的关系图。Figure 4 is a graph showing the relationship between IL23A expression and survival time in gastric cancer patients using the Kaplan-Meier survival curve method.
具体实施方式Detailed ways
下面结合附图和具体实施例对本发明进行详细说明。The present invention will be described in detail below with reference to the accompanying drawings and specific embodiments.
实施例1:利用qPCR法对收集的人胃癌组织及癌旁正常组织进行表达量检测Example 1: Detection of expression levels in collected human gastric cancer tissues and adjacent normal tissues by qPCR
1、RNA提取1. RNA extraction
1)胃癌组织及癌旁组织研磨1) Grinding of gastric cancer tissue and adjacent tissue
将研磨所需的研钵、研磨杵、剪刀、手术刀、镊子、勺子用超纯水清洗干净,于60℃烘箱烘烤3h后包好锡箔纸,后置于180℃烘箱烘烤过夜;进行组织研磨前上述器材均经需要过液氮预冷;取出经过保存于液氮的临床样品,切取黄豆大小的组织块放入预冷好的研钵中,研磨,同时不断的少量多次地补充液氮,保持研钵超低温状态,直至研磨至粉状,这个过程一般需要10min-15min;研磨充分后,加入1mL预冷的TRIzoI继续进行研磨,将组织粉末和TRIzol充分混匀;待TRIzol完全融化后转移至做好标记的1.7mL DNase/RNase Free的离心管中,进行RNA抽提,若不马上使用则冻于-80℃超低温冰箱内。Wash the mortar, pestle, scissors, scalpel, tweezers, and spoons required for grinding with ultrapure water, bake in a 60°C oven for 3 hours, wrap them with tin foil, and place them in a 180°C oven overnight to bake; Before tissue grinding, the above equipments were pre-cooled in liquid nitrogen; the clinical samples that had been stored in liquid nitrogen were taken out, and soybean-sized tissue pieces were cut into pre-cooled mortars, ground, and supplemented in small amounts and repeatedly. Liquid nitrogen, keep the mortar at ultra-low temperature until grinding to powder, this process generally takes 10-15 minutes; after grinding is complete, add 1 mL of pre-cooled TRIzol to continue grinding, and mix the tissue powder and TRIzol fully; wait until TRIzol is completely melted Then transfer it to a labeled 1.7mL DNase/RNase Free centrifuge tube for RNA extraction. If not used immediately, freeze it in a -80°C ultra-low temperature freezer.
2)总RNA的抽提与质检2) Extraction and quality inspection of total RNA
采用TRIzol说明书中分离RNA的方法进行总RNA的提取,具体步骤如下:The total RNA was extracted using the method for RNA isolation in the TRIzol manual. The specific steps are as follows:
将装有经过TRIzol裂解的组织的离心管置于室温平衡5min;按每毫升TRIzol加0.2mL氯仿的比例加入氯仿,盖好管盖,上下剧烈震荡15s,之后静置5min,4℃条件下12000×g离心15min;离心过后可看见明显的分层现象,小心吸取上清的无色水相,转移至新的1.7mL DNase/RNase Free离心管中,按0.5mL异丙醇/mL TRIzol的比例加入异丙醇,上下颠倒混匀,在室温条件下静置10min,4℃条件下12000×g离心10min,可见管底有白色总RNA沉淀;小心弃去上清,按每毫升TRIzol加1mL 75%乙醇的比例加入75%乙醇洗涤沉淀,4℃条件下7500×g离心5min;吸去上清,空气干燥5min-10min,加入适量的DNase/RNase-Free无菌水溶解RNA沉淀,之后若不立即使用就保存于-80℃。Place the centrifuge tube containing the tissue lysed by TRIzol at room temperature for 5 min; add chloroform at the ratio of 0.2 mL of chloroform per ml of TRIzol, cover the tube, shake vigorously up and down for 15 s, and then stand for 5 min at 12000 °C at 4 °C. Centrifuge at ×g for 15min; after centrifugation, obvious stratification can be seen, carefully suck the colorless aqueous phase of the supernatant, transfer it to a new 1.7mL DNase/RNase Free centrifuge tube, and press the ratio of 0.5mL isopropanol/mL TRIzol Add isopropanol, invert upside down and mix, let stand at room temperature for 10 min, and centrifuge at 12,000 × g for 10 min at 4°C. It can be seen that there is a white total RNA precipitate at the bottom of the tube; carefully discard the supernatant, add 1 mL of 75 per mL of TRIzol. Add 75% ethanol in the ratio of % ethanol to wash the precipitate, centrifuge at 7500 × g for 5 min at 4°C; aspirate the supernatant, air dry for 5 min-10 min, and add an appropriate amount of DNase/RNase-Free sterile water to dissolve the RNA precipitate. Store at -80°C for immediate use.
提取完成后,使用Nanodrop 2000超微量分光光度计对总RNA进行定量,之后用琼脂糖凝胶电泳检测RNA的完整性,具体步骤如下:After the extraction was completed, the total RNA was quantified using a Nanodrop 2000 ultra-micro spectrophotometer, and then the integrity of the RNA was detected by agarose gel electrophoresis. The specific steps are as follows:
取2μL提取好的总RNA经过适当的稀释后用Nanodrop 2000定量,使用DNase/RNase-Free无菌水作为校准时的溶液。质量较好的总RNA A260/280的比值应该在2.0-2.2之间。配制0.8%的琼脂糖凝胶,RNA上样量500-800ng,电泳缓冲液为0.5×TBE,120V恒压电泳20min,之后在凝胶成像仪上观察。完整的RNA样品在电泳图中应该呈现出3条清晰的条带,由上至下分别代表了28S rRNA、18S rRNA和5S rRNA,其中28S rRNA的条带亮度应是18SrRNA的两倍。Take 2 μL of the extracted total RNA and quantify it with Nanodrop 2000 after appropriate dilution, and use DNase/RNase-Free sterile water as the calibration solution. The ratio of A260/280 of good quality total RNA should be between 2.0-2.2. A 0.8% agarose gel was prepared, the RNA loading amount was 500-800 ng, the electrophoresis buffer was 0.5×TBE, and electrophoresis was performed at 120V for 20 min, and then observed on a gel imager. The intact RNA sample should show 3 clear bands in the electropherogram, representing 28S rRNA, 18S rRNA and 5S rRNA from top to bottom, of which 28S rRNA should be twice as bright as 18S rRNA.
2、总RNA的反转录2. Reverse transcription of total RNA
使用Takara公司的PrimeScriptTMRT reagent试剂盒进行反转录,包括去除基因组DNA和反转录两个过程,具体步骤如下所示:Use Takara's PrimeScript TM RT reagent kit for reverse transcription, including removal of genomic DNA and reverse transcription. The specific steps are as follows:
1)去除总RNA样品中的基因组DNA,体系配方如下所示:1) Remove the genomic DNA in the total RNA sample, the system formula is as follows:
置于PCR仪中进行反应,42℃反应2min。The reaction was carried out in a PCR machine, and the reaction was carried out at 42 °C for 2 min.
2)反转录反应2) Reverse transcription reaction
将总RNA样品均分至两个pcr管中,在冰上配置mRNA反转录体系,体系配方如下所示:The total RNA samples were equally divided into two PCR tubes, and the mRNA reverse transcription system was set up on ice. The system recipe is as follows:
轻柔混匀后立即置于PCR仪中进行反转录反应,反应条件为:Gently mix and immediately place it in a PCR machine for reverse transcription reaction. The reaction conditions are:
45℃ 15min45℃ 15min
85℃ 5sec85℃ 5sec
4℃ 5min4℃ 5min
3、qPCR反应3. qPCR reaction
取0.5μL反转录产物,加至19.5μL RNase free water中,稀释40倍。配置qPCR反应体系,体系如下所示:Take 0.5 μL of reverse transcription product, add it to 19.5 μL RNase free water, and dilute 40 times. Configure the qPCR reaction system as follows:
充分混匀后瞬离,轻轻弹击管壁以除去气泡,再次离心。之后置于StepOne PlusReal-Time PCR System中,设定程序并进行qPCR反应,反应程序如下:After thorough mixing, centrifuge again, gently flick the tube wall to remove air bubbles. Then put it in the StepOne Plus Real-Time PCR System, set the program and carry out the qPCR reaction. The reaction program is as follows:
4、qPCR数据分析4. qPCR data analysis
qPCR反应完成之后对获得的数据进行相对表达量分析,具体计算过程如下:After the qPCR reaction is completed, the relative expression level of the obtained data is analyzed. The specific calculation process is as follows:
ΔCt(胃癌样本)=Ct(胃癌样本中的IL23A)-Ct(胃癌样品中的内参基因GAPDH)ΔCt (gastric cancer samples) = Ct (IL23A in gastric cancer samples) - Ct (internal reference gene GAPDH in gastric cancer samples)
ΔCt(对照组样本)=Ct(对照组样本中的IL23A)-Ct(对照组样品中的内参基因GAPDH)ΔCt(control sample)=Ct(IL23A in control sample)-Ct(internal reference gene GAPDH in control sample)
ΔΔCt=ΔCt(胃癌样本)-ΔCt(对照组癌样本)ΔΔCt=ΔCt (stomach cancer sample)-ΔCt (control group cancer sample)
IL23A表达量的倍数变化=2的(-ΔΔCt)次幂。Fold change in IL23A expression = 2 to the power of (-ΔΔCt).
结果如图1所示,胃癌组织样本中IL23A的表达量显著高于对照组正常样本,其差异具有统计学差异(p<0.01)The results are shown in Figure 1, the expression of IL23A in gastric cancer tissue samples was significantly higher than that in normal samples of the control group, and the difference was statistically significant (p < 0.01).
下表为实验中用到的qPCR引物序列:The following table shows the qPCR primer sequences used in the experiment:
实施例2、组织芯片免疫组化对胃癌组织及癌旁正常组织进行表达量检测:Example 2. Tissue chip immunohistochemistry was used to detect the expression of gastric cancer tissue and adjacent normal tissue:
1、胃癌组织、癌旁组织冰冻切片1. Frozen sections of gastric cancer tissue and adjacent tissue
将OCT包埋剂(opti-mum cutting temperature compound)标在固定头上,再取合适大小的组织(约24×24×3mm,未经包埋)放在OCT上,组织表面露在OCT外,用OCT将组织全部包埋。固定头放在冷冻机内的速冷台上,-25℃左右冻10min(视组织不同而时间略有差异,组织较大或脂肪组织时间可长一些,一般情况下10min左右即可)。将冻好的冻头夹到切片机上,高速刀的角度固定好,用精调修平组织,使其暴露最大切面,将微调刻度调在5μm,放下抗卷板开始切片,朝着同一个方向匀速转动操作杆。切好后打开抗卷板,用毛笔将组织展开,小心贴在载玻片上,按顺序排列好,风干低温保存。Mark the OCT embedding medium (opti-mum cutting temperature compound) on the fixation head, and then take a suitable size of tissue (about 24×24×3mm, not embedded) and place it on the OCT. The surface of the tissue is exposed outside the OCT. The tissue was completely embedded with OCT. The fixed head is placed on the quick-cooling table in the freezer, and frozen at about -25°C for 10 minutes (the time may vary slightly depending on the tissue, and the time may be longer for larger tissue or adipose tissue, generally about 10 minutes). Clamp the frozen head to the microtome, fix the angle of the high-speed knife, use the fine adjustment to level the tissue to expose the maximum section, adjust the fine-tuning scale to 5μm, put down the anti-roll plate and start slicing, moving at a constant speed in the same direction. Turn the lever. After cutting, open the anti-roll plate, unfold the tissue with a writing brush, carefully paste it on the glass slide, arrange it in order, and store it in air-drying and low-temperature storage.
2、胃癌及癌旁组织免疫组化染色2. Immunohistochemical staining of gastric cancer and adjacent tissues
在玻片上用4%多聚甲醛或10%福尔马林固定30min。固定好后用PBS洗五遍,每次5min。加入30%H2O2 1份+甲醇50份混合,室温浸泡30min,以灭活内源性过氧化物酶,蒸馏水洗涤5次。在湿盒内用5%BSA封闭1.5h,BSA用量为每张片子约300~400μL,结束后轻轻擦干液体。湿盒内,加入一抗兔单克隆抗体(Bs-18146r,Bioss),用1%BSA稀释,稀释比例为1:200,室温反应1~1.5h。反应结束后用PBS洗涤约1h,最后轻轻擦干液体。湿盒内,加入二抗Goat-anti-Rabbit-IgG-HRP,用1%BSA稀释,稀释比例为1:100,室温反应30min。反应结束后用PBS洗涤,约2h,最后轻轻擦干液体。Fix the slides with 4% paraformaldehyde or 10% formalin for 30 min. After fixation, wash five times with PBS for 5 min each time. Add 1 part of 30% H 2 O 2 + 50 parts of methanol to mix, soak at room temperature for 30 minutes to inactivate endogenous peroxidase, and wash with distilled water 5 times. Block with 5% BSA for 1.5h in a wet box, the amount of BSA is about 300-400 μL per sheet, and the liquid is gently wiped dry after the end. In the wet box, add primary antibody rabbit monoclonal antibody (Bs-18146r, Bioss), dilute with 1% BSA, the dilution ratio is 1:200, and react at room temperature for 1-1.5 hours. After the reaction, the cells were washed with PBS for about 1 h, and finally the liquid was gently wiped dry. In the wet box, add secondary antibody Goat-anti-Rabbit-IgG-HRP, dilute with 1% BSA, the dilution ratio is 1:100, and react at room temperature for 30 minutes. After the reaction, wash with PBS for about 2h, and finally dry the liquid gently.
显色:加DAB反应2~3min,看到样品变黄后置于自来水流水中30s,终止反应,避光。Color development: Add DAB to react for 2-3 minutes, when the sample turns yellow, place it in running water for 30s, stop the reaction, and protect from light.
染色:浸入0.1-1ug/mL的DAPI中,染色1min,PBS淋洗三次。Staining: immersed in 0.1-1ug/mL DAPI, stained for 1min, rinsed three times with PBS.
脱水透明封片:75%乙醇20s→85%乙醇30s→95%乙醇1min→95%乙醇1min→无水乙醇2min*2次→二甲苯2min*2次,中性树胶封片,封片剂应适量,注意不要产生气泡。Dehydrated and transparent mounting slides: 75% ethanol for 20s→85%ethanol for 30s→95%ethanol for 1min→95%ethanol for 1min→anhydrous ethanol for 2min*2 times→xylene for 2min*2 times, neutral resin for sealing, the mounting medium should be Appropriate amount, being careful not to create air bubbles.
3、组织芯片免疫组化扫描及定量分析3. Immunohistochemical scanning and quantitative analysis of tissue chips
用组织芯片扫描仪(Pannoramic MIDI,3D HISTECH)对组织芯片进行扫描,芯片会在扫描仪的镜头下逐步移动,边移动边成像进而将组织切片上所有的组织信息都扫描成像出来形成一个文件,该文件包含了组织切片上所有的组织信息,如图2。Scan the tissue chip with a tissue chip scanner (Pannoramic MIDI, 3D HISTECH), the chip will gradually move under the lens of the scanner, and image while moving, and then scan and image all the tissue information on the tissue slice to form a file. This file contains all the tissue information on the tissue section, as shown in Figure 2.
图片扫描完成后进入Quant center分析软件的TMA软件,设置好芯片组织点直径大小和行列数,软件会自动生成编号。应用Quant center中的densito quant软件自动识别并设置组织切片上所有的深棕色为强阳性,棕黄色为中度阳性,浅黄色为弱阳性,蓝色细胞核为阴性。进而对每个组织点进行识别分析出强阳性,中度阳性,弱阳性及阴性的面积(单位:像素),阳性的百分比,最后进行H-SCORE的评分。H-SCORE(histochemistry score)是处理免疫组化结果的一种组织学评分方法,将每张切片内阳性的细胞数量及其染色强度转化为相应的数值,达到对组织染色半定量的目的,其计算公式为H-SCORE=∑(PI×I)=阳性细胞数量占切片中所有细胞数量的百分数(PI)×着色强度(I)。After the image scanning is completed, enter the TMA software of the Quant center analysis software, set the diameter of the chip tissue point and the number of rows and columns, and the software will automatically generate a number. The densito quant software in the Quant center was used to automatically identify and set all dark brown nuclei as strong positive, brown yellow as moderate positive, light yellow as weak positive, and blue nuclei as negative. Then, each tissue point was identified and analyzed to determine the area of strong positive, moderate positive, weak positive and negative (unit: pixel), the percentage of positive, and finally the H-SCORE score was performed. H-SCORE (histochemistry score) is a histological scoring method for processing the results of immunohistochemistry. The number of positive cells and their staining intensity in each section are converted into corresponding values to achieve the purpose of semi-quantitative tissue staining. The calculation formula is H-SCORE=∑(PI×I)=percentage of positive cells to all cells in the section (PI)×staining intensity (I).
4、结合胃癌患者临床生存信息分析癌症组织中IL23A表达的临床意义4. Analysis of the clinical significance of IL23A expression in cancer tissues combined with the clinical survival information of gastric cancer patients
使用GraphPad Prism 5软件通过两尾配对t检验评估IL23A的表达。p<0.05被认为具有统计学意义,所有分析均使用R软件(更新版本3.5.2)。40对胃癌及癌旁组织中IL23A表达量如图3所示,胃癌组织和癌旁组织中IL23A表达差异具有统计学意义(p<0.01),胃癌组织中其表达量显著高于癌旁组织。对上述实验中的H-SCORE表达值作为参考标准,依据基因表达的中位值,将40例胃癌患者分为IL23A高表达组和IL23A低表达组,并结合其生存期资料,绘制Kaplan-Meier生存曲线,分析结果见图4。IL23A高表达胃癌患者的生存期明显长于IL23A低表达胃癌患者的生存期,其差异具有统计学意义(p<0.01),这表明IL23A在胃癌预后评估中具有重要意义,可作为胃癌患者诊治及预后标志物。IL23A expression was assessed by two-tailed paired t-test using GraphPad Prism 5 software. p<0.05 was considered statistically significant and all analyses were performed using R software (updated version 3.5.2). The expression levels of IL23A in 40 pairs of gastric cancer and adjacent tissues are shown in Figure 3. The difference in IL23A expression between gastric cancer tissues and adjacent tissues was statistically significant (p<0.01), and its expression in gastric cancer tissues was significantly higher than that in adjacent tissues. Taking the H-SCORE expression value in the above experiments as the reference standard, and based on the median value of gene expression, 40 patients with gastric cancer were divided into IL23A high expression group and IL23A low expression group, and combined with their survival data, the Kaplan-Meier was drawn. The survival curve, the analysis results are shown in Figure 4. The survival time of gastric cancer patients with high IL23A expression was significantly longer than that of gastric cancer patients with low IL23A expression, and the difference was statistically significant (p < 0.01), which indicated that IL23A has important significance in the prognosis evaluation of gastric cancer, and can be used as the diagnosis, treatment and prognosis of gastric cancer patients. landmark.
本发明不限于上述实施例,本领域技术人员根据本发明的揭示,不脱离本发明范畴所做出的改进和修改都应该在本发明的保护范围之内。The present invention is not limited to the above-mentioned embodiments, and improvements and modifications made by those skilled in the art according to the disclosure of the present invention without departing from the scope of the present invention should all fall within the protection scope of the present invention.
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Application publication date: 20200717 |