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CN111090002A - Nanopore gene sequencing micro-current detection device and current stability compensation method - Google Patents

Nanopore gene sequencing micro-current detection device and current stability compensation method Download PDF

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CN111090002A
CN111090002A CN201911350418.4A CN201911350418A CN111090002A CN 111090002 A CN111090002 A CN 111090002A CN 201911350418 A CN201911350418 A CN 201911350418A CN 111090002 A CN111090002 A CN 111090002A
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周连群
臧佩琳
姚佳
郭振
李超
李金泽
张芷齐
李传宇
张威
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Suzhou Institute of Biomedical Engineering and Technology of CAS
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Abstract

The invention provides a nanopore gene sequencing micro-current detection device, which comprises a detection circuit for detecting current change generated when DNA molecules flow through a nanopore on a thin film, wherein the detection circuit comprises a first electrode, a second electrode, a third electrode and a constant potential circuit; when the working electrode deflects, the constant potential circuit makes the ground potential of the counter electrode pair always follow the ground potential of the reference electrode pair, so that a stable voltage difference is kept between the first electrode and the second electrode. The invention also relates to a compensation method for the stability of the micro-current in the nanopore gene sequencing. The invention changes the current signal detected by the working electrode into a voltage signal through the integral amplifier, the integral amplifier takes a capacitor as a feedback element, and two sampling and holding circuits are adopted to realize related double sampling, thereby having lower noise performance, improving the bandwidth and the linearity of the signal, simultaneously carrying out filtering, denoising, compensation and other processing on the current signal, and greatly improving the accuracy of current detection.

Description

纳米孔基因测序微电流检测装置及电流稳定的补偿方法Nanopore gene sequencing microcurrent detection device and compensation method for current stabilization

技术领域technical field

本发明涉及电子学技术领域,尤其涉及纳米孔基因测序微电流检测装置。The invention relates to the technical field of electronics, in particular to a nanopore gene sequencing microcurrent detection device.

背景技术Background technique

以单分子、边合成边测序为特点的第三代纳米孔基因测序技术在读长、成本、速度上具备较为显著的优势,是现在的研究热点之一。纳米孔测序的原理是检测解旋后的DNA单链通过纳米孔时产生的微弱特征电流变化来判定其碱基序列。因此精确测量该特征电流是实现高准确性基因测序的关键技术之一,而当前纳米孔基因测序广泛使用两电极电化学体系,在两电极之间施加一定电压用于驱动DNA穿过纳米孔,但是由于非法拉第过程的存在,两电极之间的压差极易波动从而造成电位偏移,并且由于该电流极其微弱,一般在皮安量级,压差的变化将极大地影响电流的检测精度,影响测序的准确性。The third-generation nanopore gene sequencing technology, characterized by single-molecule and sequencing-by-synthesis, has significant advantages in read length, cost, and speed, and is one of the current research hotspots. The principle of nanopore sequencing is to detect the weak characteristic current changes generated when the unwound DNA single strand passes through the nanopore to determine its base sequence. Therefore, accurate measurement of this characteristic current is one of the key technologies to achieve high-accuracy gene sequencing. Currently, a two-electrode electrochemical system is widely used in nanopore gene sequencing. A certain voltage is applied between the two electrodes to drive DNA through the nanopore. However, due to the existence of the Faraday process, the voltage difference between the two electrodes is very easy to fluctuate, resulting in potential offset, and because the current is extremely weak, generally in the picoamp level, the change in the voltage difference will greatly affect the detection accuracy of the current. , affecting the accuracy of sequencing.

发明内容SUMMARY OF THE INVENTION

为了克服现有技术的不足,本发明提供纳米孔基因测序微电流检测装置。In order to overcome the deficiencies of the prior art, the present invention provides a nanopore gene sequencing microcurrent detection device.

本发明通过在第一电极与第二电极之间加入第三电极,第三电极使得第一电极与第二电极之间形成恒定电位,以解决上述技术问题。The present invention solves the above technical problem by adding a third electrode between the first electrode and the second electrode, and the third electrode forms a constant potential between the first electrode and the second electrode.

本发明提供纳米孔基因测序微电流检测装置,包括对DNA分子流经薄膜上的纳米孔道时发生的电流变化的检测电路,其特征在于,所述检测电路包括第一电极、第二电极、第三电极和恒电位电路,所述第一电极与第二电极设置于薄膜的两侧,在所述第一电极与第二电极之间施加电压以驱动薄膜上的DNA单链穿过所述纳米孔道,所述第二电极用于检测DNA分子经过纳米孔道时产生的电流信号;The invention provides a nanopore gene sequencing microcurrent detection device, which includes a detection circuit for the current change that occurs when DNA molecules flow through a nanopore channel on a thin film, and is characterized in that the detection circuit includes a first electrode, a second electrode, a Three electrodes and a potentiostatic circuit, the first electrode and the second electrode are arranged on both sides of the film, and a voltage is applied between the first electrode and the second electrode to drive the DNA single strand on the film to pass through the nanometer a pore channel, the second electrode is used to detect the current signal generated when the DNA molecule passes through the nanopore channel;

所述第三电极设置于所述第一电极与第二电极之间,所述第三电极连接所述恒电位电路,所述恒电位电路连接所述第一电极;所述恒电位电路调节所述第一电极对地电位始终跟随所述第三电极对地电位的变化,以使得所述第一电极与第二电极之间保持稳定的电压差。The third electrode is arranged between the first electrode and the second electrode, the third electrode is connected to the constant potential circuit, and the constant potential circuit is connected to the first electrode; the constant potential circuit adjusts the The potential of the first electrode to the ground always follows the change of the potential of the third electrode to the ground, so that a stable voltage difference is maintained between the first electrode and the second electrode.

优选地,所述恒电位电路包括恒电位发生器与数据处理组件,所述恒电位发生器与所述第一电极连接,所述数据处理组件位于所述恒电位发生器与第二电极之间;所述数据处理组件将根据检测到的所述第二电极的电位偏移量发送指令用于配置所述恒电位发生器,以使得所述第一电极与第二电极之间形成恒定电位。Preferably, the potentiostatic circuit comprises a potentiostat and a data processing component, the potentiostat is connected to the first electrode, and the data processing component is located between the potentiostat and the second electrode ; The data processing component sends an instruction for configuring the potentiostat generator according to the detected potential offset of the second electrode, so that a constant potential is formed between the first electrode and the second electrode.

优选地,所述第二电极与数据处理组件之间包括积分放大器,所述积分放大器用于将所述第二电极检测到的电流信号转换成电压信号;其中,所述积分放大器采用高输入级阻抗。Preferably, an integrating amplifier is included between the second electrode and the data processing component, and the integrating amplifier is used to convert the current signal detected by the second electrode into a voltage signal; wherein, the integrating amplifier adopts a high input stage impedance.

优选地,所述积分放大器与所述数据处理组件之间包括至少一个采样保持器,所述采样保持器用于保持采样值。Preferably, at least one sample-and-hold device is included between the integrating amplifier and the data processing component, and the sample-and-hold device is used to hold the sampled value.

优选地,所述第二电极对地电位为零。Preferably, the potential of the second electrode to ground is zero.

优选地,所述恒电位发生器包括运算放大器,所述运算放大器用于向所述第一电极提供电流,所述运算放大器的反相输入连接所述第三电极。Preferably, the potentiostatic generator includes an operational amplifier for supplying current to the first electrode, and an inverting input of the operational amplifier is connected to the third electrode.

优选地,所述恒电位发生器还包括偏压源所述偏压源电性连接所述数据处理组件,所述数据处理组件发送指令给所述偏压源,所述偏压源用于设定所述第一电极与第二电极之间的恒定电位。Preferably, the constant potential generator further comprises a bias voltage source, the bias voltage source is electrically connected to the data processing component, the data processing component sends an instruction to the bias voltage source, and the bias voltage source is used for setting A constant potential between the first electrode and the second electrode is determined.

本发明还提供一种用于纳米孔基因测序微电流稳定的补偿方法,对所述积分放大器放大后的输出信号进行高频补偿,所述高频补偿用于减弱在所述积分放大器放大后的输出信号的高频分量。The present invention also provides a compensation method for micro-current stabilization of nanopore gene sequencing, wherein high-frequency compensation is performed on the amplified output signal of the integrating amplifier, and the high-frequency compensation is used to attenuate the output signal amplified by the integrating amplifier. High frequency components of the output signal.

优选地,在进行所述高频补偿之前通过低通滤波器进行零点过冲补偿;在进行所述零点过冲补偿的同时加入偏置电压后补偿,所述偏置电压后补偿用于消除所述积分放大器中输出的偏置电压。Preferably, the zero-point overshoot compensation is performed by a low-pass filter before the high-frequency compensation is performed; the offset voltage post-compensation is added while the zero-point overshoot compensation is performed, and the bias voltage post-compensation is used to eliminate all The bias voltage output from the integrating amplifier.

优选地,还包括对电极电容、膜电容以及纳米孔串联电阻的补偿;其中,Preferably, compensation for electrode capacitance, membrane capacitance and nanopore series resistance is also included; wherein,

对所述电极电容与膜电容的补偿包括分别在积分放大器的反相输入端连接第一补偿支路与第二补偿支路,所述第一补偿支路与第二补偿支路分别用于给所述电极电容与膜电容提供电流;所述第一补偿支路与第二补偿支路同时连接有一阶跃电压,所述阶跃电压使得经过所述第一补偿支路与所述电极电容以及所述第二补偿支路与所述膜电容的电流大小相等、方向相反;The compensation for the electrode capacitance and the membrane capacitance includes connecting a first compensation branch and a second compensation branch at the inverting input end of the integrating amplifier, respectively, and the first compensation branch and the second compensation branch are respectively used for the The electrode capacitance and the membrane capacitance provide current; the first compensation branch and the second compensation branch are connected with a step voltage at the same time, and the step voltage makes the first compensation branch and the electrode capacitance and the electrode capacitance pass through. The current of the second compensation branch and the membrane capacitor are equal in magnitude and opposite in direction;

对所述纳米孔串联电阻的补偿包括将所述积分放大器的输出电压取出一定比例,用于抵消所述纳米孔串联电阻造成的压降,并形成一个校正回路的补偿电路。The compensation for the series resistance of the nanopores includes taking out a certain proportion of the output voltage of the integrating amplifier, which is used to offset the voltage drop caused by the series resistance of the nanopores, and form a compensation circuit for correcting the loop.

相比现有技术,本发明的有益效果在于:Compared with the prior art, the beneficial effects of the present invention are:

本发明公开了纳米孔基因测序微电流检测装置,该装置包括设置于脂质膜两侧的对电极与工作电极,在对电极与工作电极之间设置参比电极,在工作电极与参比电极之间通过恒电位发生器施加偏置电压,当工作电极发生偏移时,恒电位发生器使对电极对地电位始终跟随参比电极对地电位变化,保证对电极与工作电极之间形成恒定电位用于驱动DNA分子通过纳米孔。另外,将工作电极检测到的电流信号通过积分放大器变化为电压信号,积分放大器以电容为反馈元件,并且采用两个采样保持电路实现了相关双取样,具有更低的噪声表现且提高了信号的带宽和线性度,同时对电流信号也进行滤波、去噪、补偿等处理,极大地提高了电流检测的准确率。The invention discloses a nanopore gene sequencing microcurrent detection device. The device comprises a counter electrode and a working electrode arranged on both sides of a lipid membrane, a reference electrode is arranged between the counter electrode and the working electrode, and the working electrode and the reference electrode are arranged between the working electrode and the reference electrode. The bias voltage is applied through the constant potential generator. When the working electrode is offset, the constant potential generator makes the potential of the counter electrode to the ground always follow the change of the potential of the reference electrode to the ground, so as to ensure a constant formation between the counter electrode and the working electrode. The electrical potential is used to drive DNA molecules through the nanopore. In addition, the current signal detected by the working electrode is changed into a voltage signal through the integrating amplifier. The integrating amplifier uses the capacitor as the feedback element, and uses two sample-and-hold circuits to achieve correlated double sampling, which has lower noise performance and improves the signal quality. At the same time, the current signal is also processed by filtering, denoising, compensation, etc., which greatly improves the accuracy of current detection.

本发明还公开了一种用于纳米孔基因测序微电流稳定的补偿方法,该方法可精确稳定检测DNA分子过纳米孔时产生的皮安量级的电流信号波动,其检测精度可低至10皮安以下,可实现高准确率的纳米孔基因测序。The invention also discloses a compensation method for microcurrent stabilization of nanopore gene sequencing, which can accurately and stably detect the current signal fluctuation of picoamp level generated when DNA molecules pass through the nanopore, and the detection accuracy can be as low as 10 Below picoam, high-accuracy nanopore gene sequencing can be achieved.

上述说明仅是本发明技术方案的概述,为了能够更清楚了解本发明的技术手段,并可依照说明书的内容予以实施,以下以本发明的较佳实施例并配合附图详细说明如后。本发明的具体实施方式由以下实施例及其附图详细给出。The above description is only an overview of the technical solution of the present invention. In order to understand the technical means of the present invention more clearly, and implement it according to the content of the description, the preferred embodiments of the present invention are described in detail below with the accompanying drawings. Specific embodiments of the present invention are given in detail by the following examples and the accompanying drawings.

附图说明Description of drawings

此处所说明的附图用来提供对本发明的进一步理解,构成本申请的一部分,本发明的示意性实施例及其说明用于解释本发明,并不构成对本发明的不当限定。在附图中:The accompanying drawings described herein are used to provide a further understanding of the present invention and constitute a part of the present application. The exemplary embodiments of the present invention and their descriptions are used to explain the present invention and do not constitute an improper limitation of the present invention. In the attached image:

图1为本发明的纳米孔基因测序微电流检测装置的整体结构图;Fig. 1 is the overall structure diagram of the nanopore gene sequencing microcurrent detection device of the present invention;

图2为本发明的纳米孔基因测序微电流检测装置的具体结构图;2 is a specific structural diagram of the nanopore gene sequencing microcurrent detection device of the present invention;

图3为本发明的纳米孔基因测序微电流检测装置的恒电位发生器结构图;3 is a structural diagram of a potentiostatic generator of the nanopore gene sequencing microcurrent detection device of the present invention;

图4为本发明的一种用于纳米孔基因测序微电流稳定的补偿方法的示意图;4 is a schematic diagram of a compensation method for nanopore gene sequencing microcurrent stabilization according to the present invention;

附图标记:10、脂质膜,20、DNA分子,30、纳米孔道,40、第二电极,50、第一电极,60、第三电极,70、恒电位电路,710、恒电位发生器,720、积分放大器,730、去噪单元,740、第一采样保持器,750、第二采样保持器,760、数据处理组件,711、第一电容,712、第一电阻,713、第二电阻,714、第二电容,715、运算放大器,716、偏压源,800、增压过冲电路,810、高频补偿,820、零点过冲补偿,830、失调补偿,840、偏置电压后补偿,850、低通滤波器,860、第一补偿支路,870、阶跃电压,880、第二补偿支路,890、校正回路的补偿电路。Reference numerals: 10, lipid membrane, 20, DNA molecule, 30, nanopore, 40, second electrode, 50, first electrode, 60, third electrode, 70, potentiostatic circuit, 710, potentiostatic generator , 720, integrating amplifier, 730, denoising unit, 740, first sample-and-hold, 750, second sample-and-hold, 760, data processing component, 711, first capacitor, 712, first resistor, 713, second Resistor, 714, Second Capacitor, 715, Operational Amplifier, 716, Bias Voltage Source, 800, Boost Overshoot Circuit, 810, High Frequency Compensation, 820, Zero Overshoot Compensation, 830, Offset Compensation, 840, Bias Voltage Post-compensation, 850, low-pass filter, 860, first compensation branch, 870, step voltage, 880, second compensation branch, 890, compensation circuit of the correction loop.

具体实施方式Detailed ways

下面,结合附图以及具体实施方式,对本发明做进一步描述,需要说明的是,在不相冲突的前提下,以下描述的各实施例之间或各技术特征之间可以任意组合形成新的实施例。The present invention will be further described below with reference to the accompanying drawings and specific embodiments. It should be noted that, on the premise of no conflict, the embodiments or technical features described below can be combined arbitrarily to form new embodiments. .

本发明提供纳米孔基因测序微电流检测装置,如图1-3所示,包括对DNA分子流经薄膜上的纳米孔道时发生的电流变化的检测电路,所述检测电路包括第一电极50、第二电极40、第三电极60和恒电位电路70,所述第一电极50与第二电极40设置于薄膜的两侧,在所述第一电极50与第二电极40之间施加电压以驱动薄膜上的DNA单链穿过所述纳米孔道30,所述第二电极40用于检测DNA分子20经过纳米孔道30时产生的电流信号;The present invention provides a nanopore gene sequencing microcurrent detection device, as shown in Figures 1-3, comprising a detection circuit for the current change that occurs when a DNA molecule flows through a nanopore channel on a thin film, the detection circuit includes a first electrode 50, The second electrode 40, the third electrode 60 and the potentiostatic circuit 70, the first electrode 50 and the second electrode 40 are arranged on both sides of the film, and a voltage is applied between the first electrode 50 and the second electrode 40 to The DNA single strand on the film is driven to pass through the nanopore channel 30, and the second electrode 40 is used to detect the current signal generated when the DNA molecule 20 passes through the nanopore channel 30;

所述第三电极60设置于所述第一电极50与第二电极40之间,所述第三电极60连接所述恒电位电路70,所述恒电位电路70连接所述第一电极50;所述恒电位电路70调节所述第一电极50对地电位始终跟随所述第三电极60对地电位的变化,以使得所述第一电极50与第二电极40之间保持稳定的电压差。在一个实施例中,通过在第一电极50与第二电极40之间施加一定的电压用于驱动DNA分子20穿过纳米孔道30,第一电极50为对电极,第二电极40为工作电极,工作电极用于检测DNA分子20经过纳米孔道30时产生的微弱电流信号。在对电极与工作电极之间设有参比电极,参比电极连接恒电位电路70,恒电位电路70使对电极对地电位始终跟随参比电极对地电位的变化,以保证对电极与工作电极之间形成恒定电位用于驱动DNA分子20通过纳米孔道30。The third electrode 60 is disposed between the first electrode 50 and the second electrode 40 , the third electrode 60 is connected to the constant potential circuit 70 , and the constant potential circuit 70 is connected to the first electrode 50 ; The potentiostatic circuit 70 adjusts the potential of the first electrode 50 to the ground to always follow the change of the potential of the third electrode 60 to the ground, so as to maintain a stable voltage difference between the first electrode 50 and the second electrode 40 . In one embodiment, a certain voltage is applied between the first electrode 50 and the second electrode 40 for driving the DNA molecules 20 to pass through the nanopore 30, the first electrode 50 is a counter electrode, and the second electrode 40 is a working electrode , the working electrode is used to detect the weak current signal generated when the DNA molecule 20 passes through the nanopore 30 . A reference electrode is arranged between the counter electrode and the working electrode, and the reference electrode is connected to a potentiostatic circuit 70. The potentiostatic circuit 70 makes the potential of the counter electrode to the ground always follow the change of the potential of the reference electrode to the ground, so as to ensure that the counter electrode and the work A constant potential is formed between the electrodes for driving the DNA molecules 20 through the nanopore channel 30 .

所述恒电位电路70包括恒电位发生器710与数据处理组件760,所述恒电位发生器710与所述第一电极50连接,所述数据处理组件760位于所述恒电位发生器710与第二电极40之间;所述数据处理组件760将根据检测到的所述第二电极40的电位偏移量发送指令用于配置所述恒电位发生器710,以使得所述第一电极50与第二电极40之间形成恒定电位。在一个实施例中,薄膜优选脂质膜10,纳米孔道30是嵌入在双层脂质膜10之间的,纳米孔道30连通脂质膜10的上下两个区域,恒电位发生器710用于在三电极体系中的工作电极与对电极之间形成偏置电压,以驱动DNA分子20过纳米孔道30,同时形成离子电流,对电极对地电位始终跟随参比电极电位变化;恒电位发生器710用于保持工作电极与对电极之间形成稳定、恒定的驱动电压。The potentiostatic circuit 70 includes a potentiostatic generator 710 and a data processing component 760, the potentiostatic generator 710 is connected to the first electrode 50, and the data processing component 760 is located between the potentiostatic generator 710 and the first electrode 50. Between the two electrodes 40; the data processing component 760 will send an instruction according to the detected potential offset of the second electrode 40 for configuring the potentiostat generator 710, so that the first electrode 50 and the A constant potential is formed between the second electrodes 40 . In one embodiment, the film is preferably the lipid membrane 10, the nanopores 30 are embedded between the bilayer lipid membranes 10, the nanopores 30 connect the upper and lower regions of the lipid membrane 10, and the potentiostatic generator 710 is used for A bias voltage is formed between the working electrode and the counter electrode in the three-electrode system to drive the DNA molecules 20 to pass through the nanopore 30, and an ionic current is formed at the same time, and the potential of the counter electrode to the ground always follows the change of the potential of the reference electrode; 710 is used to maintain a stable and constant driving voltage between the working electrode and the counter electrode.

在一个实施例中,第二电极40即工作电极对地电位为零,工作电极对地电位为零可以达到参比电极与工作电极之间稳定可控的驱动电压的目的,且电流只在对电极和工作电极之间流动,参比电极没有电流流过,避免产生极化现象。In one embodiment, the second electrode 40, that is, the working electrode has zero potential to ground, and the working electrode has zero potential to ground to achieve a stable and controllable driving voltage between the reference electrode and the working electrode, and the current is only Between the electrode and the working electrode, no current flows through the reference electrode to avoid polarization.

所述第二电极40与数据处理组件760之间包括积分放大器720,所述积分放大器720用于将所述第二电极40检测到的电流信号转换成电压信号;其中,所述积分放大器720采用高输入级阻抗。在一个实施例中,积分放大器720用于将检测到的电流信号转换成电压信号,积分放大器720采用高输入级阻抗,并用小电容作为反馈元件构成积分电路,但由于电容需要进行周期性放电,需放置一个与电容并联的开关以控制电容充放电过程。积分放大器720连接有去噪单元730,去噪单元730用于对电流信号检测过程中产生的噪声进行去噪处理。An integrating amplifier 720 is included between the second electrode 40 and the data processing component 760, and the integrating amplifier 720 is used to convert the current signal detected by the second electrode 40 into a voltage signal; wherein, the integrating amplifier 720 adopts High input stage impedance. In one embodiment, the integrating amplifier 720 is used to convert the detected current signal into a voltage signal. The integrating amplifier 720 adopts a high input stage impedance and uses a small capacitor as a feedback element to form an integrating circuit, but since the capacitor needs to be periodically discharged, A switch needs to be placed in parallel with the capacitor to control the charging and discharging process of the capacitor. The integrating amplifier 720 is connected with a de-noising unit 730, and the de-noising unit 730 is configured to perform de-noising processing on the noise generated in the current signal detection process.

所述积分放大器720与所述数据处理组件760之间包括至少一个采样保持器,所述采样保持器用于保持采样值。在一个实施例中,为了防止积分放大器720在反馈电容放电器件无法处理信号,配置了采样保持器用于保持采样值,采样保持器采用相关双取样技术,采样保持器包括第一采样保持器740与第二采样保持器750,第一采样保持器740与第二采样保持器750并联连接,在降低噪声的同时提高电流信号检测的准确率,其一般组成为模拟开关、存储电容和缓冲放大器,并通过模拟开关控制其属于采样状态还是保持状态。At least one sample-and-hold is included between the integrating amplifier 720 and the data processing component 760, and the sample-and-hold is used to hold the sampled value. In one embodiment, in order to prevent the integrating amplifier 720 from being unable to process the signal in the feedback capacitor discharge device, a sample-and-hold device is configured to hold the sampled value, and the sample-and-hold device adopts the correlated double sampling technology. The sample-and-hold device includes the first sample-and-hold device 740 and the The second sample-and-hold 750, the first sample-and-hold 740 is connected in parallel with the second sample-and-hold 750, and the accuracy of current signal detection is improved while reducing noise, which is generally composed of an analog switch, a storage capacitor and a buffer amplifier, and It is controlled by the analog switch whether it belongs to the sampling state or the holding state.

所述恒电位发生器710包括运算放大器715,所述运算放大器715用于向所述第一电极50提供电流,所述运算放大器715的反相输入连接所述第三电极60。所述恒电位发生器710还包括偏压源716,所述偏压,716电性连接所述数据处理组件760,所述数据处理组件760发送指令给所述偏压源716,所述偏压源716用于设定所述第一电极50与第二电极40之间的恒定电位。在一个实施例中,运算放大器715向对电极提供电流,以平衡工作电极所需电流,且反相输入连接到参比电极,运算放大器715将工作电极与对电极保持在恒定电位,此电位由偏压源716提供,偏压源716由数据处理组件760进行控制。由于参比电极上电流极小,运算放大器715中的输入失调电压引起的任何偏移都会导致导通电位突然变化,所选用的运算放大器715应保证具有较小的输入偏置电流一般小于5pA、低偏移电压一般小于100μV,并控制运算放大器715在恒定温度下工作。恒电位电路70的电路稳定性与降噪性依赖于电阻与电容,电阻包括第一电阻712与第二电阻713,电容包括第一电容711与第二电容714,如图3所示。The potentiostat generator 710 includes an operational amplifier 715 for supplying current to the first electrode 50 , and an inverting input of the operational amplifier 715 is connected to the third electrode 60 . The constant potential generator 710 further includes a bias voltage source 716, the bias voltage 716 is electrically connected to the data processing component 760, and the data processing component 760 sends an instruction to the bias voltage source 716, the bias voltage The source 716 is used to set a constant potential between the first electrode 50 and the second electrode 40 . In one embodiment, the operational amplifier 715 supplies current to the counter electrode to balance the current required by the working electrode, and the inverting input is connected to the reference electrode, the operational amplifier 715 maintains the working and counter electrodes at a constant potential, which is determined by Bias voltage source 716 is provided, and bias voltage source 716 is controlled by data processing component 760 . Since the current on the reference electrode is extremely small, any offset caused by the input offset voltage in the operational amplifier 715 will cause a sudden change in the turn-on potential. The selected operational amplifier 715 should ensure that the input bias current is small The low offset voltage is typically less than 100 μV and controls the op amp 715 to operate at a constant temperature. The circuit stability and noise reduction of the potentiostatic circuit 70 depend on resistance and capacitance. The resistance includes a first resistance 712 and a second resistance 713 , and the capacitance includes a first capacitance 711 and a second capacitance 714 , as shown in FIG. 3 .

另外,数据处理组,760还用于将电压信号转换成数字信号,一般由单片机、FPGA(现场可编程门阵列)处理器、模数转换功能模块、数据传输模块组成,以将数据传输至上位机电脑进行大规模数据分析,从而实现对DNA分子的碱基序列识别和组装。In addition, the data processing group, 760 is also used to convert the voltage signal into a digital signal, which is generally composed of a single-chip microcomputer, an FPGA (field programmable gate array) processor, an analog-to-digital conversion function module, and a data transmission module to transmit data to the upper level. Large-scale data analysis is carried out by computer and computer, so as to realize the base sequence identification and assembly of DNA molecules.

本发明还提供一种用于纳米孔基因测序微电流稳定的补偿方法,如图4所示,包括对积分放大器720放大后的输出信号进行高频补偿810,所述高频补偿810用于减弱在所述积分放大器720放大后的输出信号的高频分量。在进行所述高频补偿810之前通过低通滤波器进行零点过冲补偿820;在进行所述零点过冲补偿820的同时加入偏置电压后补偿840,所述偏置电压后补偿840用于消除所述积分放大器720中输出的偏置电压。在一个实施例中,为解决经积分放大器720放大后的输出信号高频分量减弱的问题,对电路进行高频补偿810以提供带宽,同时积分放大器720的零点会对高频补偿810的输出信号产生过冲现象,故在高频补偿810之前利用低通滤波器进行零点过冲补偿820。另外,在积分放大器720中存在一定的输出偏置电压,需要对其进行内部或外部失调调零即积分放大器输入失调补偿830,在零点过冲补偿820的同时加入偏置电压后补偿840,以消除偏置电压的负面作用。The present invention also provides a compensation method for nanopore gene sequencing microcurrent stabilization, as shown in FIG. 4 , which includes performing high-frequency compensation 810 on the amplified output signal of the integrating amplifier 720, and the high-frequency compensation 810 is used to weaken the The high frequency components of the output signal after being amplified by the integrating amplifier 720 . Before performing the high-frequency compensation 810, a low-pass filter is used to perform zero-point overshoot compensation 820; while performing the zero-point overshoot compensation 820, a bias voltage post-compensation 840 is added, and the bias voltage post-compensation 840 is used for The offset voltage output in the integrating amplifier 720 is eliminated. In one embodiment, in order to solve the problem that the high frequency component of the output signal amplified by the integrating amplifier 720 is weakened, a high frequency compensation 810 is performed on the circuit to provide a bandwidth, and the zero point of the integrating amplifier 720 will compensate the output signal of the high frequency 810 at the same time. An overshoot phenomenon occurs, so before the high frequency compensation 810 , a low-pass filter is used to perform zero-point overshoot compensation 820 . In addition, there is a certain output bias voltage in the integrating amplifier 720, which needs to be zero-adjusted internally or externally, that is, the input offset compensation of the integrating amplifier 830, the offset voltage is added to the zero-point overshoot compensation 820 and the offset voltage is added to compensate 840, so as to Eliminate the negative effects of bias voltage.

在纳米孔基因测序检测过程中,DNA单分子过纳米孔道会产生过孔噪声,DNA单分子穿孔离子电流信号的频率范围和噪声及干扰信号的频率范围会有重叠,且噪声的频率通常比检测信号的频率大,通过低通滤波器850滤除噪声及干扰信号,低通滤波器850的频率优选10kHz。In the process of nanopore gene sequencing detection, DNA single molecule passing through the nanopore channel will generate via noise. The frequency range of DNA single molecule perforation ion current signal and the frequency range of noise and interference signals will overlap, and the frequency of noise is usually higher than that of detection. The frequency of the signal is large, and noise and interference signals are filtered out by the low-pass filter 850 , and the frequency of the low-pass filter 850 is preferably 10 kHz.

还包括对电极电容、膜电容以及纳米孔串联电阻的补偿;其中,Also includes compensation for electrode capacitance, membrane capacitance, and nanopore series resistance; where,

对所述电极电容与膜电容的补偿包括分别在所述积分放大器720的反相输入端连接第一补偿支路860与第二补偿支路880,所述第一补偿支路860与第二补偿支路880分别用于给所述电极电容与膜电容提供电流;所述第一补偿支路860与第二补偿支路880同时连接有一阶跃电压870,所述阶跃电压870使得经过所述第一补偿支路860与所述电极电容以及所述第二补偿支路880与所述膜电容的电流大小相等、方向相反;Compensation for the electrode capacitance and membrane capacitance includes connecting a first compensation branch 860 and a second compensation branch 880 at the inverting input end of the integrating amplifier 720 respectively, and the first compensation branch 860 and the second compensation The branches 880 are respectively used to supply current to the electrode capacitance and the membrane capacitance; the first compensation branch 860 and the second compensation branch 880 are connected to a step voltage 870 at the same time, and the step voltage 870 makes the step voltage 870 pass through the The currents of the first compensation branch 860 and the electrode capacitor and the second compensation branch 880 and the membrane capacitor are equal in magnitude and opposite in direction;

对所述纳米孔串联电阻的补偿包括将所述积分放大器720的输出电压取出一定比例,用于抵消所述纳米孔串联电阻造成的压降,并形成一个校正回路的补偿电路890。The compensation for the series resistance of the nanopores includes taking a certain proportion of the output voltage of the integrating amplifier 720 to cancel the voltage drop caused by the series resistance of the nanopores, and to form a compensation circuit 890 for a correction loop.

电极电容不是纯容性的,周围存在着与其相串联的电阻,如电极电阻及电解质溶液、电极内液的电阻等。电极电容对电路的影响主要是在检测系统刚开始运作的时候,这是因为电极电容的时间常数相对较小,为uS级,产生的充放电电流经过反馈元件放大后,会比pA级的检测信号高2到3个数量级,足够淹没检测信号,并会使放大器进入饱和区,严重影响检测系统工作。在积分放大器720的反相输入端接入一个电极电容补偿支路即第一补偿支路860,专门为电极电容充放电提供电流,该支路以补偿电容作为充放电电流注射元件,并在补偿电容的另一端也输入一个同步的阶跃电压870,使通过补偿电容的电流恰好与待消除的电极电容的充放电电流大小相等、方向相反。同时,由于电极电容时间常数的存在,用于向补偿电容支路施加的阶跃电压信号也需要通过一个时间常数可调的延迟电路后再输出,从而使补偿电流与电极电容电流更好的匹配。The electrode capacitance is not purely capacitive, and there are resistances in series with it, such as electrode resistance and the resistance of the electrolyte solution and the liquid in the electrode. The influence of the electrode capacitance on the circuit is mainly when the detection system starts to operate. This is because the time constant of the electrode capacitance is relatively small, at the uS level. The signal is 2 to 3 orders of magnitude higher, which is enough to overwhelm the detection signal and make the amplifier enter the saturation region, seriously affecting the operation of the detection system. An electrode capacitance compensation branch, namely the first compensation branch 860, is connected to the inverting input end of the integrating amplifier 720 to provide current for charging and discharging the electrode capacitance. A synchronous step voltage 870 is also input to the other end of the capacitor, so that the current passing through the compensation capacitor is exactly equal in magnitude and opposite in direction to the charging and discharging current of the electrode capacitor to be eliminated. At the same time, due to the existence of the electrode capacitance time constant, the step voltage signal applied to the compensation capacitor branch also needs to be output through a delay circuit with an adjustable time constant, so that the compensation current and the electrode capacitance current are better matched. .

膜电容的时间常数高于电极电容,为几十到几百uS。补偿时类似电极电容补偿,使膜电容补偿通路即第二补偿支路880的电压源阶跃电压870经过时间延迟电路和比例调节电路,输出给补偿电容即可。The time constant of the membrane capacitance is higher than that of the electrode capacitance, which is tens to hundreds of uS. Compensation is similar to electrode capacitance compensation, so that the voltage source step voltage 870 of the membrane capacitance compensation path, that is, the second compensation branch 880, passes through the time delay circuit and the proportional adjustment circuit and is output to the compensation capacitor.

纳米孔串联电阻对测量电路主要有两种危害:一种是它限制了膜电容的充放电时间,影响了DNA快速测量的指标,使系统带宽不如预期那样高,这部分已经由之前的膜电容补偿通路进行弥补;还有一种是电流流经串联电阻造成的压降,对于检测电流部分,在积分放大器的输出端施加一个补偿通道,把正比于检测电流的积分放大器的输出电压取出一定比例,用于抵消部分压降形成一个校正回路的补偿电路890,可提高对检测电流信号的时间分辨率,系统带宽能力也会有所提升;对于膜电容的充放电电流部分,施加驱动电压时,在其脉冲前沿及后沿各增加一个短暂的充或放电脉冲,这样使膜电压的变化开始先向比预先设定的电压值更高或低的水平变化,一旦达到预定值立即撤去该附加脉冲,显然提高了膜电压的改变速度,这样的增压过冲电路可预测各时刻膜电容充放电电流在串联电阻上的压降并对其进行补偿。由于影响弱电流测量灵敏度的首要因素是积分放大器720的偏置电流,以及其随温度或时间的漂移,所以前置积分放大器应满足偏置电流尽可能的小于被测的微弱电流,且增益、共模抑制比高,失调电压和漂移小,噪声小等要求,可选用AD549L等低噪声高增益低偏置电流的JFET器件。The series resistance of nanopores has two main hazards to the measurement circuit: one is that it limits the charging and discharging time of the membrane capacitance, which affects the index of rapid DNA measurement and makes the system bandwidth not as high as expected, which has been partially affected by the previous membrane capacitance. The compensation path is used to make up for it; there is also a voltage drop caused by the current flowing through the series resistance. For the detection current part, a compensation channel is applied to the output of the integrating amplifier, and the output voltage of the integrating amplifier proportional to the detection current is taken out. A certain proportion, The compensation circuit 890 used to offset part of the voltage drop to form a correction loop can improve the time resolution of the detection current signal, and the system bandwidth capability will also be improved; for the charge and discharge current part of the film capacitor, when the driving voltage is applied, the The leading edge and trailing edge of the pulse each add a short charge or discharge pulse, so that the change of the membrane voltage starts to change to a level higher or lower than the preset voltage value, and the additional pulse is immediately removed once the preset value is reached, Obviously, the change speed of the membrane voltage is improved, and such a booster overshoot circuit can predict and compensate the voltage drop of the charging and discharging current of the membrane capacitor across the series resistance at each moment. Since the primary factor affecting the weak current measurement sensitivity is the bias current of the integrating amplifier 720 and its drift with temperature or time, the pre-integrating amplifier should satisfy that the bias current is as small as possible less than the weak current to be measured, and the gain, High common mode rejection ratio, small offset voltage and drift, and low noise are required. JFET devices with low noise, high gain and low bias current such as AD549L can be selected.

本发明公开了纳米孔基因测序微电流检测装置,该装置包括设置于脂质膜10两侧的对电极与工作电极,在对电极与工作电极之间设置有参比电极,在工作电极与参比电极之间通过恒电位发生器710施加偏置电压,当工作电极发生偏移时,恒电位发生器710使对电极对地电位始终跟随参比电极对地电位变化,保证对电极与工作电极之间形成恒定电位用于驱动DNA分子20通过纳米孔道30。另外,将工作电极检测到的电流信号通过积分放大器720变化为电压信号,积分放大器720以电容为反馈元件,并且采用两个采样保持电路实现了相关双取样,具有更低的噪声表现且提高了信号的带宽和线性度,同时对电流信号也进行滤波、去噪、补偿等处理,极大地提高了电流检测的准确率。The invention discloses a nanopore gene sequencing microcurrent detection device, which comprises a counter electrode and a working electrode arranged on both sides of a lipid membrane 10, a reference electrode is arranged between the counter electrode and the working electrode, and the working electrode and the reference electrode are arranged between the counter electrode and the working electrode. A bias voltage is applied between the specific electrodes through the potentiostat generator 710. When the working electrode is offset, the potentiostat generator 710 makes the potential of the counter electrode to the ground always follow the change of the potential of the reference electrode to the ground, so as to ensure that the counter electrode and the working electrode change. A constant potential is formed therebetween for driving the DNA molecules 20 through the nanopore channel 30 . In addition, the current signal detected by the working electrode is changed into a voltage signal through the integrating amplifier 720. The integrating amplifier 720 uses the capacitor as the feedback element, and uses two sample-and-hold circuits to achieve correlated double sampling, which has lower noise performance and improved performance. The bandwidth and linearity of the signal, and at the same time, the current signal is also processed by filtering, denoising, compensation, etc., which greatly improves the accuracy of current detection.

本发明还公开了一种用于纳米孔基因测序微电流稳定的补偿方法,该方法可精确稳定检测DNA分子过纳米孔时产生的皮安量级的电流信号波动,其检测精度可低至10皮安以下,可实现高准确率的纳米孔基因测序。The invention also discloses a compensation method for microcurrent stabilization of nanopore gene sequencing, which can accurately and stably detect the current signal fluctuation of picoamp level generated when DNA molecules pass through the nanopore, and the detection accuracy can be as low as 10 Below picoam, high-accuracy nanopore gene sequencing can be achieved.

以上,仅为本发明的较佳实施例而已,并非对本发明作任何形式上的限制;凡本行业的普通技术人员均可按说明书附图所示和以上而顺畅地实施本发明;但是,凡熟悉本专业的技术人员在不脱离本发明技术方案范围内,利用以上所揭示的技术内容而做出的些许更动、修饰与演变的等同变化,均为本发明的等效实施例;同时,凡依据本发明的实质技术对以上实施例所作的任何等同变化的更动、修饰与演变等,均仍属于本发明的技术方案的保护范围之内。The above are only preferred embodiments of the present invention, and do not limit the present invention in any form; any person of ordinary skill in the industry can smoothly implement the present invention as shown in the accompanying drawings and above; however, any Those skilled in the art, without departing from the scope of the technical solution of the present invention, make use of the above-disclosed technical content to make some changes, modifications and equivalent changes of evolution are equivalent embodiments of the present invention; at the same time, Any alteration, modification and evolution of any equivalent changes made to the above embodiments according to the essential technology of the present invention still fall within the protection scope of the technical solution of the present invention.

Claims (10)

1.纳米孔基因测序微电流检测装置,包括对DNA分子流经薄膜上的纳米孔道时发生的电流变化的检测电路,其特征在于,所述检测电路包括第一电极、第二电极、第三电极和恒电位电路,所述第一电极与第二电极设置于薄膜的两侧,在所述第一电极与第二电极之间施加电压以驱动薄膜上的DNA单链穿过所述纳米孔道,所述第二电极用于检测DNA分子经过纳米孔道时产生的电流信号;1. Nanopore gene sequencing microcurrent detection device, comprising the detection circuit of the current change that occurs when DNA molecules flow through the nanopore channel on the film, it is characterized in that, the detection circuit comprises a first electrode, a second electrode, a third Electrodes and a potentiostatic circuit, the first electrode and the second electrode are arranged on both sides of the film, and a voltage is applied between the first electrode and the second electrode to drive the DNA single strand on the film to pass through the nanopore , the second electrode is used to detect the current signal generated when the DNA molecule passes through the nanopore; 所述第三电极设置于所述第一电极与第二电极之间,所述第三电极连接所述恒电位电路,所述恒电位电路连接所述第一电极;所述恒电位电路调节所述第一电极对地电位始终跟随所述第三电极对地电位的变化,以使得所述第一电极与第二电极之间保持稳定的电压差。The third electrode is arranged between the first electrode and the second electrode, the third electrode is connected to the constant potential circuit, and the constant potential circuit is connected to the first electrode; the constant potential circuit adjusts the The potential of the first electrode to the ground always follows the change of the potential of the third electrode to the ground, so that a stable voltage difference is maintained between the first electrode and the second electrode. 2.如权利要求1所述的纳米孔基因测序微电流检测装置,其特征在于,所述恒电位电路包括恒电位发生器与数据处理组件,所述恒电位发生器与所述第一电极连接,所述数据处理组件位于所述恒电位发生器与第二电极之间;所述数据处理组件将根据检测到的所述第二电极的电位偏移量发送指令用于配置所述恒电位发生器,以使得所述第一电极与第二电极之间形成恒定电位。2. The nanopore gene sequencing microcurrent detection device of claim 1, wherein the potentiostatic circuit comprises a potentiostatic generator and a data processing assembly, and the potentiostatic generator is connected to the first electrode , the data processing component is located between the potentiostatic generator and the second electrode; the data processing component will send an instruction for configuring the potentiostatic generation according to the detected potential offset of the second electrode so that a constant potential is formed between the first electrode and the second electrode. 3.如权利要求2所述的纳米孔基因测序微电流检测装置,其特征在于,所述第二电极与数据处理组件之间包括积分放大器,所述积分放大器用于将所述第二电极检测到的电流信号转换成电压信号;其中,所述积分放大器采用高输入级阻抗。3 . The nanopore gene sequencing microcurrent detection device according to claim 2 , wherein an integrating amplifier is included between the second electrode and the data processing component, and the integrating amplifier is used to detect the second electrode. 4 . The resulting current signal is converted into a voltage signal; wherein, the integrating amplifier adopts a high input stage impedance. 4.如权利要求3所述的纳米孔基因测序微电流检测装置,其特征在于,所述积分放大器与所述数据处理组件之间包括至少一个采样保持器,所述采样保持器用于保持采样值。4 . The nanopore gene sequencing microcurrent detection device according to claim 3 , wherein at least one sample holder is included between the integrating amplifier and the data processing component, and the sample holder is used to hold the sampled value. 5 . . 5.如权利要求1所述的纳米孔基因测序微电流检测装置,其特征在于,所述第二电极对地电位为零。5 . The nanopore gene sequencing microcurrent detection device of claim 1 , wherein the second electrode has zero potential to ground. 6 . 6.如权利要求2所述的纳米孔基因测序微电流检测装置,其特征在于,所述恒电位发生器包括运算放大器,所述运算放大器用于向所述第一电极提供电流,所述运算放大器的反相输入连接所述第三电极。6 . The nanopore gene sequencing microcurrent detection device of claim 2 , wherein the potentiostatic generator comprises an operational amplifier, and the operational amplifier is used to supply current to the first electrode, and the operational amplifier The inverting input of the amplifier is connected to the third electrode. 7.如权利要求6所述的纳米孔基因测序微电流检测装置,其特征在于,所述恒电位发生器还包括偏压源所述偏压源电性连接所述数据处理组件,所述数据处理组件发送指令给所述偏压源,所述偏压源用于设定所述第一电极与第二电极之间的恒定电位。7 . The nanopore gene sequencing microcurrent detection device according to claim 6 , wherein the potentiostatic generator further comprises a bias voltage source, the bias voltage source is electrically connected to the data processing component, and the data The processing component sends an instruction to the bias voltage source for setting a constant potential between the first electrode and the second electrode. 8.一种用于纳米孔基因测序微电流稳定的补偿方法,其特征在于,包括对积分放大器放大后的输出信号进行高频补偿,所述高频补偿用于减弱在所述积分放大器放大后的输出信号的高频分量。8. A compensation method for microcurrent stabilization of nanopore gene sequencing, characterized in that it comprises performing high-frequency compensation on the amplified output signal of the integrating amplifier, and the high-frequency compensation is used to weaken the output signal amplified by the integrating amplifier. the high frequency components of the output signal. 9.如权利要求8所述的纳米孔基因测序微电流稳定的补偿方法,其特征在于,在进行所述高频补偿之前通过低通滤波器进行零点过冲补偿;在进行所述零点过冲补偿的同时加入偏置电压后补偿,所述偏置电压后补偿用于消除所述积分放大器中输出的偏置电压。9 . The compensation method for nanopore gene sequencing microcurrent stability according to claim 8 , wherein, before the high-frequency compensation is performed, a low-pass filter is used to perform zero-point overshoot compensation; The offset voltage post-compensation is added during the compensation, and the offset voltage post-compensation is used to eliminate the offset voltage output in the integrating amplifier. 10.如权利要求8所述的纳米孔基因测序微电流稳定的补偿方法,其特征在于,还包括对电极电容、膜电容以及纳米孔串联电阻的补偿;其中,10. The method for compensating nanopore gene sequencing microcurrent stability according to claim 8, further comprising compensation for electrode capacitance, membrane capacitance and nanopore series resistance; wherein, 对所述电极电容与膜电容的补偿包括分别在所述积分放大器的反相输入端连接第一补偿支路与第二补偿支路,所述第一补偿支路与第二补偿支路分别用于给所述电极电容与膜电容提供电流;所述第一补偿支路与第二补偿支路同时连接有一阶跃电压,所述阶跃电压使得经过所述第一补偿支路与所述电极电容以及所述第二补偿支路与所述膜电容的电流大小相等、方向相反;The compensation for the electrode capacitance and the membrane capacitance includes connecting a first compensation branch and a second compensation branch at the inverting input end of the integrating amplifier respectively, and the first compensation branch and the second compensation branch are respectively used for the compensation. In order to provide current to the electrode capacitance and the membrane capacitance; the first compensation branch and the second compensation branch are connected with a step voltage at the same time, and the step voltage makes the first compensation branch and the electrode pass through. The current of the capacitor and the second compensation branch and the membrane capacitor are equal in magnitude and opposite in direction; 对所述纳米孔串联电阻的补偿包括将所述积分放大器的输出电压取出一定比例,用于抵消所述纳米孔串联电阻造成的压降,并形成一个校正回路的补偿电路。The compensation for the series resistance of the nanopores includes taking out a certain proportion of the output voltage of the integrating amplifier, which is used to offset the voltage drop caused by the series resistance of the nanopores, and form a compensation circuit for correcting the loop.
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Application publication date: 20200501