CN110229818B - CpSNAC1 Gene Promoter of Prunus chinensis and its Application - Google Patents
CpSNAC1 Gene Promoter of Prunus chinensis and its Application Download PDFInfo
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Abstract
Description
技术领域technical field
本发明涉及基因工程领域,具体涉及蜡梅CpSNAC1基因启动子及其应用。The invention relates to the field of genetic engineering, in particular to a CpSNAC1 gene promoter of Prunus chinensis and its application.
背景技术Background technique
蜡梅(Chimonanthus praecox L.),落叶丛生灌木,暖地常表现半常绿状,高度达3~4m,花期12月到第2年的3月,远在展叶前开放,果约8月成熟。蜡梅是蜡梅科蜡梅属的一种观赏性极强的树种,素以在寒冬腊月傲雪盛放而名,花朵颜色淡雅,花香扑鼻,沁人心脾,是我国的传统名贵花木,除了具有较高的观赏价值外,还有珍贵的文化价值、药用价值和经济价值。随着现代分子生物技术的发展,对蜡梅的研究已经从传统分类学研究和一些应用价值研究转向了分子水平的研究。Chimonanthus praecox L., a deciduous bushy shrub, often semi-evergreen on warm ground, up to 3-4m in height, flowering from December to March of the second year, opening far before the leaves unfold, and the fruit matures around August . Wax plum is a highly ornamental tree species belonging to the genus Wax Prunus, known for its blooming in the cold winter and the twelfth lunar month. The flowers are elegant in color, fragrant and refreshing. In addition to the high ornamental value, there are also precious cultural value, medicinal value and economic value. With the development of modern molecular biotechnology, the research on Cannabis chinensis has shifted from traditional taxonomic research and some applied value research to molecular level research.
NAC(NAM、ATAF1、ATAF2和CUC2)转录因子家族是植物基因组中最大的转录因子家族之一,也是植物特有的转录因子。NAC家族转录因子的名字取自最早发表的3个具有NAC结构域基因的首字母缩写,分别是从矮牵牛上发现的NAM基因和从拟南芥上发现的ATAF1/2和CUC2基因。植物NAC转录因子具有多种功能,对植物的生长发育调控、植物的逆境胁迫应答、调控植物的抗病性、参与植物次生生长调控以及激素信号转导等生理过程中具有重要作用。The NAC (NAM, ATAF1, ATAF2 and CUC2) transcription factor family is one of the largest transcription factor families in the plant genome and is also a plant-specific transcription factor. The names of the NAC family transcription factors are taken from the acronyms of the first three published genes with NAC domains, namely the NAM gene found in petunia and the ATAF1/2 and CUC2 genes found in Arabidopsis thaliana. Plant NAC transcription factors have multiple functions, and play an important role in the regulation of plant growth and development, the response of plants to stress, regulation of plant disease resistance, participation in plant secondary growth regulation, and hormone signal transduction.
目前,有关NAC基因转录因子的研究已经比较广泛与透彻,但是对其启动子的相关研究并不多。相关研究发现NAC家族基因启动子序列中除了含有启动子TATA-box、CAAT-box等基本的组成元件之外,还含有一些特有的与激素、抗逆境、组织器官发育等相关的顺式作用元件,推测对NAC转录因子的激活和诱导起到调控作用。At present, the research on NAC gene transcription factor has been extensive and thorough, but there are not many related researches on its promoter. Relevant studies have found that in addition to the basic components of promoters such as TATA-box and CAAT-box, the promoter sequence of NAC family genes also contains some unique cis-acting elements related to hormones, anti-stress, tissue and organ development, etc. , speculated to play a regulatory role in the activation and induction of NAC transcription factors.
发明内容SUMMARY OF THE INVENTION
本发明的目的在于为提高蜡梅抗性提供一种新选择。The purpose of the present invention is to provide a new choice for improving the resistance of the wax plum.
本发明提供了蜡梅CpSNAC1基因启动子,其核苷酸序列如SEQ ID No.15第974~1437位所示。The present invention provides a CpSNAC1 gene promoter of Prunus chinensis, the nucleotide sequence of which is shown in positions 974-1437 of SEQ ID No.15.
进一步的,所述的蜡梅CpSNAC1基因启动子,其核苷酸序列如SEQ ID No.15第727~1437位所示。Further, the nucleotide sequence of the CpSNAC1 gene promoter of the wax plum is shown in positions 727-1437 of SEQ ID No.15.
进一步的,所述的蜡梅CpSNAC1基因启动子,其核苷酸序列如SEQ ID No.15第215~1437位所示。Further, the nucleotide sequence of the CpSNAC1 gene promoter of Prunus chinensis is shown in positions 215-1437 of SEQ ID No.15.
进一步的,所述的蜡梅CpSNAC1基因启动子,其核苷酸序列如SEQ ID No.15所示。Further, the nucleotide sequence of the CpSNAC1 gene promoter of the wax plum is shown in SEQ ID No.15.
本发明还提供了所述的蜡梅CpSNAC1基因启动子在调控植物逆境抗性中的用途。The present invention also provides the use of the CpSNAC1 gene promoter in the control of plant stress resistance.
具体的,所述的植物为拟南芥或蜡梅。Specifically, the plant is Arabidopsis thaliana or wax plum.
具体的,所述的逆境为激素、高盐、干旱、高温或低温。Specifically, the adversity is hormone, high salt, drought, high temperature or low temperature.
具体的,所述的激素处理为浓度50μM·L-1脱落酸处理。Specifically, the hormone treatment was abscisic acid treatment at a concentration of 50 μM·L -1 .
具体的,所述的高盐为浓度150mM·L-1的NaCl处理。Specifically, the high salt is NaCl treatment with a concentration of 150 mM·L -1 .
具体的,所述的干旱为浓度10%质量分数的PEG处理。Specifically, the drought is PEG treatment with a concentration of 10% by mass.
具体的,所述的高温为42℃。Specifically, the high temperature is 42°C.
具体的,所述的低温为4℃。Specifically, the low temperature is 4°C.
本发明的有益效果:本发明首次克隆获得蜡梅CpSNAC1基因的启动子,并克隆得到3个CpSNAC1启动子缺失片段,通过转基因技术、GUS组织化学染色、GUS酶活性定量检测等方法初步验证了CpSNAC1基因启动子的表达调控特点。通过研究发现,本申请中的启动子与调控植物应对逆境(激素、干旱、高盐、高温、低温)的能力密切相关,该结果可为研究蜡梅逆境胁迫相关调控提供参考。Beneficial effects of the present invention: the present invention clones the CpSNAC1 gene promoter of Prunus chinensis for the first time, and clones three CpSNAC1 promoter deletion fragments, and preliminarily verifies CpSNAC1 through transgenic technology, GUS histochemical staining, quantitative detection of GUS enzyme activity and other methods Expression regulation characteristics of gene promoters. Through research, it is found that the promoter in this application is closely related to the ability of regulating plants to cope with adversity (hormone, drought, high salt, high temperature, low temperature).
附图说明Description of drawings
图1CpSNAC1基因启动子序列。Figure 1 CpSNAC1 gene promoter sequence.
图2为CpSNAC1pro的序列分析。5UTR Py-rich stretch:提高转录水平顺式作用元件;AAGAA-motif:涉及脱落酸反应的顺式作用元件;ABRE:涉及脱落酸反应的顺式作用元件;ACE:顺式作用元素涉及光响应性;ARE:厌氧诱导的必须顺式调控元件;ATCT-motif:涉及光响应性的保守的DNA模块的一部分;AuxRR-core:参与生长素反应的顺式作用调控元件;Box 4:涉及光响应性的保守的DNA模块的一部分;Box I:光响应元件;Box-W1:真菌诱发剂反应元件;CAAT-box:启动子和增强子区域中常见的顺式作用元件;CAT-box:与分生组织表达相关的顺式作用调节元件;CATT-motif:部分光应答元件;CE3:参与ABA和VP1反应的顺式作用元件;CGTCA-motif:顺式作用的调节元素涉及MeJA反应;G-Box:涉及光反应性的顺式作用调节元件;G-box:涉及光反应性的顺式作用调节元件;GA-motif:部分光应答元件;GARE-motif:赤霉素反应元件;GCN4_motif:涉及胚乳表达的顺式调节元件;I-box:部分光应答元件;MBS:MYB结合位点涉及干旱诱导性;O2-site:参与玉米醇溶蛋白代谢调控的顺式作用调控元件;P-box:赤霉素应答元件;Skn-1_motif:胚乳表达所需的顺式作用调节元件;Sp1:光响应元件;TATA-box:核心启动子元件在-30左右的转录起始点;TC-rich repeats:涉及防御和应激反应的顺式作用元件;TCA-element:涉及水杨酸反应性的顺式作用元素;TGA-element:生长素反应元件;TGACG-motif:顺式作用的调节元素涉及MeJA反应;circadian:参与昼夜节律控制的顺式作用调控元件。Figure 2 is a sequence analysis of CpSNAC1pro. 5UTR Py-rich stretch: cis-acting element that increases transcription level; AAGAA-motif: cis-acting element involved in abscisic acid response; ABRE: cis-acting element involved in abscisic acid response; ACE: cis-acting element involved in light responsiveness ; ARE: anaerobic-induced essential cis-regulatory element; ATCT-motif: part of a conserved DNA module involved in light-responsiveness; AuxRR-core: cis-acting regulatory element involved in auxin response; Box 4: involved in light-responsiveness part of a sexually conserved DNA module; Box I: light-responsive element; Box-W1: fungal elicitor-responsive element; CAAT-box: common cis-acting element in promoter and enhancer regions; CAT-box: associated with cis-acting regulatory elements related to tissue expression; CATT-motif: partial light-responsive elements; CE3: cis-acting elements involved in ABA and VP1 responses; CGTCA-motif: cis-acting regulatory elements involved in MeJA responses; G-Box : cis-acting regulatory element involved in light-responsiveness; G-box: cis-acting regulatory element involved in light-responsiveness; GA-motif: partial light-responsive element; GARE-motif: gibberellin-responsive element; GCN4_motif: involved in endosperm Expressed cis-regulatory element; I-box: partial light-responsive element; MBS: MYB binding site involved in drought inducibility; O2-site: cis-acting regulatory element involved in the regulation of zein metabolism; P-box: erythroid Mycin-responsive element; Skn-1_motif: cis-acting regulatory element required for endosperm expression; Sp1: light-responsive element; TATA-box: transcription start point of core promoter element around -30; TC-rich repeats: involved in defense cis-acting element and stress response; TCA-element: cis-acting element involved in salicylic acid responsiveness; TGA-element: auxin-responsive element; TGACG-motif: cis-acting regulatory element involved in MeJA response; circadian : cis-acting regulatory elements involved in circadian control.
图3为CpSNAC1基因启动子结构示意图,红色箭头表示缺失分段位置。TCA:涉及水杨酸反应性的顺式作用元素;ABRE:涉及脱落酸反应的顺式作用元件;circadian:参与昼夜节律控制的顺式作用调控元件;P-BOX:赤霉素应答元件;TC-rich:涉及防御和应激反应的顺式作用元件;AuxRR-core:参与生长素反应的顺式作用调控元件;MBS:MYB结合位点;CGTCA:顺式作用的调节元素涉及MeJA反应;GARE:赤霉素反应元件;TGACG:顺式作用的调节元素涉及MeJA反应;CAT-box:与分生组织表达相关的顺式作用调节元件;CE3:参与ABA和VP1反应的顺式作用元件。Figure 3 is a schematic diagram of the promoter structure of the CpSNAC1 gene, and the red arrow indicates the position of the deletion segment. TCA: cis-acting element involved in salicylic acid responsiveness; ABRE: cis-acting element involved in abscisic acid response; circadian: cis-acting regulatory element involved in circadian rhythm control; P-BOX: gibberellin response element; TC -rich: cis-acting elements involved in defense and stress responses; AuxRR-core: cis-acting regulatory elements involved in auxin responses; MBS: MYB binding site; CGTCA: cis-acting regulatory elements involved in MeJA responses; GARE : gibberellin response element; TGACG: cis-acting regulatory element involved in MeJA response; CAT-box: cis-acting regulatory element associated with meristem expression; CE3: cis-acting element involved in ABA and VP1 responses.
图4为CpSNAC1基因启动子各缺失分段示意图。Figure 4 is a schematic diagram of each deletion segment of the CpSNAC1 gene promoter.
图5为CpSNAC1pro/CpSNAC1pro-D1/D2/D3的瞬时活性检测。AgrobactertumGV3101 Blank:农杆菌GV3101空菌株;35S promoter control pcambial1305:含CaMV35S启动子的pcambial载体;CpSNAC1 promoter CpSNAC1pro:CpSNAC1启动子全长;CpSNAC1-D1promoter CpSNAC1pro-D1:CpSNAC1启动子缺失片段D1;CpSNAC1-D2 promoterCpSNAC1pro-D2:CpSNAC1启动子缺失片段D2;CpSNAC1-D3 promoter CpSNAC1pro-D3:CpSNAC1启动子缺失片段D3。Figure 5 is a transient activity assay of CpSNAC1pro/CpSNAC1pro-D1/D2/D3. AgrobactertumGV3101 Blank: Agrobacterium GV3101 empty strain; 35S promoter control pcambial1305: pcambial vector containing CaMV35S promoter; CpSNAC1 promoter CpSNAC1pro: full-length CpSNAC1 promoter; CpSNAC1-D1promoter CpSNAC1pro-D1: CpSNAC1 promoter deletion fragment D1; -D2: CpSNAC1 promoter deletion fragment D2; CpSNAC1-D3 promoter CpSNAC1pro-D3: CpSNAC1 promoter deletion fragment D3.
图6为CpSNAC1pro/CpSNAC1pro-D1/D2/D3转基因拟南芥1-10d萌发化学染色。WT:野生型拟南芥;1305:转pcambia空载体的拟南芥。Figure 6 is the chemical staining of CpSNAC1pro/CpSNAC1pro-D1/D2/D3 transgenic Arabidopsis 1-10d germination. WT: wild-type Arabidopsis thaliana; 1305: Arabidopsis thaliana transformed with pcambia empty vector.
图7为转CpSNAC1基因启动子及其各缺失分段拟南芥组织化学染色。图A~D分别为CpSNAC1pro、CpSNAC1pro-D1、CpSNAC1pro-D2和CpSNAC1pro-D3转基因拟南芥各组织化学染色;A~L分别是花簇、花朵、花瓣、花萼、花蕊、花柱、茎、果荚、莲座叶和茎生叶。Figure 7 is the histochemical staining of Arabidopsis thaliana after transgenic CpSNAC1 gene promoter and its deletion. Figures A to D are histochemical staining of CpSNAC1pro, CpSNAC1pro-D1, CpSNAC1pro-D2 and CpSNAC1pro-D3 transgenic Arabidopsis, respectively; A to L are flower clusters, flowers, petals, calyx, stamens, styles, stems, and pods, respectively , rosette leaves and stem leaves.
图8为CpSNAC1pro转基因拟南芥非生物胁迫处理后GUS基因的表达分析。Figure 8 shows the expression analysis of GUS gene after CpSNAC1pro transgenic Arabidopsis was treated with abiotic stress.
图9为BSA标准曲线。Figure 9 is a BSA standard curve.
图10为4-MUG标准曲线。Figure 10 is a 4-MUG standard curve.
图11为不同诱导好胁迫处理后的CpSNAC1pro、CpSNAC1pro-D1、CpSNAC1pro-D2和CpSNAC1pro-D3转基因拟南芥GUS酶活性测定。A:50μM·L-1ABA;B:150mM·L-1Nac;C:10%PEG;D:4℃低温;E:42℃高温。Figure 11 is the GUS enzyme activity assay of CpSNAC1pro, CpSNAC1pro-D1, CpSNAC1pro-D2 and CpSNAC1pro-D3 transgenic Arabidopsis thaliana after different induction stress treatments. A: 50 μM·L -1 ABA; B: 150 mM·L -1 Nac; C: 10% PEG; D: low temperature at 4°C; E: high temperature at 42°C.
图12为CpSNAC1pro、CpSNAC1pro-D1、CpSNAC1pro-D2和CpSNAC1pro-D3转基因拟南芥个组织GUS酶活测定。Figure 12 is the GUS enzyme activity assay of CpSNAC1pro, CpSNAC1pro-D1, CpSNAC1pro-D2 and CpSNAC1pro-D3 transgenic Arabidopsis tissues.
图13为CpSNAC1编码的蛋白与其他物种的NAC蛋白的多序列比对结果。序列来源于NCBI(https://www.ncbi.nlm.nih.gov/):ZmNAC1(GenBank ID:PWZ31933)、GmNAC1(GenBank ID:NP_001240958)、ANAC072(GenBank ID:OAO97067)、ATAF1(GenBank ID:CAA52771)、ATAF2(GenBank ID:AAM65967)、GmNAC4(GenBank ID:NP_001238424)、NnNAC2(GenBank ID:XP_010268987)Figure 13 shows the results of multiple sequence alignment of the protein encoded by CpSNAC1 and NAC proteins of other species. Sequences from NCBI (https://www.ncbi.nlm.nih.gov/): ZmNAC1 (GenBank ID: PWZ31933), GmNAC1 (GenBank ID: NP_001240958), ANAC072 (GenBank ID: OAO97067), ATAF1 (GenBank ID: CAA52771), ATAF2 (GenBank ID: AAM65967), GmNAC4 (GenBank ID: NP_001238424), NnNAC2 (GenBank ID: XP_010268987)
图14为CpSNAC1编码蛋白的蛋白聚类分析。Figure 14 is a protein cluster analysis of proteins encoded by CpSNAC1.
具体实施方式Detailed ways
实施例1蜡梅CpSNAC1基因的分离Example 1 Isolation of CpSNAC1 gene of Prunus chinensis
用Trizol法提取蜡梅叶片总RNA,通过反转录合成cDNA。根据蜡梅花转录组数据库库中已知的序列片段,用软件Primer primer 5.0设计特异引物进行PCR扩增,引物序列如下:Total RNA was extracted from the leaves of Prunus chinensis by Trizol method, and cDNA was synthesized by reverse transcription. According to the known sequence fragments in the Prunus chinensis transcriptome database library, use the software Primer primer 5.0 to design specific primers for PCR amplification. The primer sequences are as follows:
NAC1-ORF-F:5'-gttgtgaggcgcatttcttgcgt-3'(SEQ ID No.3)NAC1-ORF-F: 5'-gttgtgaggcgcatttcttgcgt-3' (SEQ ID No. 3)
NAC1-ORF-R:3'-gcttctgctctacatgctcttcctc-5'(SEQ ID No.4)NAC1-ORF-R: 3'-gcttctgctctacatgctcttcctc-5' (SEQ ID No. 4)
以蜡梅cDNA为模板,扩增蜡梅CpSNAC1基因,PCR反应体系及反应条件如下:ddH2O17.8μL,10×HiFi Taq PCR BufferⅡ2.5μL,dNTP(10mM)1.5μL,SNAC1-ORF-F(10μM)1μL,SNAC1-ORF-R(10μM)1μL,蜡梅cDNA1μL,TaKaRa Ex TaqTM 0.2μL。94℃预变性5min;94℃变性30s,56℃退火30s,72℃延伸1min,28个循环;72℃延伸10min。Amplify the CpSNAC1 gene of Prunus chinensis using the cDNA of Prunus chinensis as the template. The PCR reaction system and reaction conditions are as follows: ddH 2 O 17.8 μL, 10×HiFi Taq PCR Buffer II 2.5 μL, dNTP (10 mM) 1.5 μL, SNAC1-ORF-F ( 10 μM) 1 μL, SNAC1-ORF-R (10 μM) 1 μL,
将PCR产物回收后连接到pMD19-T载体,转化大肠杆菌感受态细胞Top10,挑取重组子进行测序,蜡梅CpSNAC1基因cDNA序列如SEQ ID No.1所示。The PCR product was recovered and connected to the pMD19-T vector, transformed into E. coli competent cells Top10, and the recombinant was picked for sequencing.
注:本步所用的Trizol试剂,RT-PCR Kit反转录试剂盒、ExTaq酶、HiFi Taq酶、pMD19-T载体均购自日本TaKaRa公司(大连);胶回收试剂盒、质粒提取试剂盒、DNA分子量标准DL2000购自天根生化科技(北京)有限公司;大肠杆菌感受态Top10由西南大学园林花卉研究所自制。Note: Trizol reagent used in this step, RT-PCR Kit reverse transcription kit, ExTaq enzyme, HiFi Taq enzyme, pMD19-T vector were purchased from Japan TaKaRa Company (Dalian); gel recovery kit, plasmid extraction kit, DNA molecular weight standard DL2000 were purchased from Tiangen Biochemical Science and Technology (Beijing) Co., Ltd;
CpSNAC1基因的cDNA全长为1008bp,包含891bp的最大开放阅读框,编码297个氨基酸。在NCBI数据库进行Blastp对比(图13),结果显示蜡梅CpSNAC1基因编码蛋白(SEQ IDNo.2)与拟南芥ATAF1、ATAF2,大豆GmNAC2,玉米ZmNAC1蛋白序列具有较高的同源性。构建进化树分析发现(图14),CpSNAC1属于SNAC亚家族,在遗传性距离上,CpSNAC1与大豆GmNAC2、拟南芥ATAF1的进化距离较近,ATAF1、GmNAC2及ZmNAC1等基因已经被证明具有胁迫响应功能。The full-length cDNA of CpSNAC1 gene is 1008 bp, including the largest open reading frame of 891 bp, encoding 297 amino acids. Blastp comparison was performed in the NCBI database (Fig. 13), and the results showed that the protein encoded by the CpSNAC1 gene (SEQ ID No. 2) of Arabidopsis thaliana had high homology with the protein sequences of Arabidopsis ATAF1, ATAF2, soybean GmNAC2, and maize ZmNAC1. The phylogenetic tree analysis found (Fig. 14) that CpSNAC1 belongs to the SNAC subfamily. In terms of genetic distance, CpSNAC1 is closely related to soybean GmNAC2 and Arabidopsis ATAF1, and genes such as ATAF1, GmNAC2 and ZmNAC1 have been proved to have stress response. Function.
实施例2蜡梅CpSNAC1启动子的克隆Example 2 Cloning of the CpSNAC1 promoter of Prunus chinensis
1蜡梅基因组DNA的提取1 Extraction of the genomic DNA of Prunus chinensis
利用CTAB法提取蜡梅基因组总DNA。The total genomic DNA of Prunus chinensis was extracted by CTAB method.
(1)取0.1g蜡梅幼嫩叶片,在液氮中研磨成粉末,移入1.5mL离心管;(1) Take 0.1g of young leaves of Prunus chinensis, grind them into powder in liquid nitrogen, and transfer them into a 1.5mL centrifuge tube;
(2)加入750μL、65℃预热的CTAB提取液,迅速涡旋混匀;(2) Add 750 μL of CTAB extract solution preheated at 65°C, and vortex to mix quickly;
(3)65℃水浴,裂解45min,每隔15min轻轻摇动一次。(3) 65°C water bath, lysing for 45min, shaking gently every 15min.
(4)取出,冷却后在通风橱中加入等体积氯仿异戊醇(24:1),轻柔颠倒混匀,静止10min;(4) Take out, add an equal volume of chloroform isoamyl alcohol (24:1) in a fume hood after cooling, gently invert and mix, and stand still for 10 min;
(5)12,000rpm、4℃离心10min;(5) Centrifuge at 12,000rpm and 4°C for 10min;
(6)取上清,加入等体积-20℃预冷的异丙醇,混匀,置于冰上30min,出现白色絮状沉淀;(6) Take the supernatant, add an equal volume of isopropanol pre-cooled at -20°C, mix well, and place it on ice for 30 minutes, and a white flocculent precipitate appears;
(7)12,000rpm、4℃离心10min;(7) Centrifuge at 12,000rpm and 4°C for 10min;
(8)去上清,用75%乙醇漂洗2~3次,再用1mL无水乙醇漂洗一次;(8) Remove the supernatant, rinse with 75% ethanol for 2 to 3 times, and then rinse with 1 mL of absolute ethanol once;
(9)将沉淀置于超净工作台上或者64℃以下恒温箱干燥,直至半透明状;(9) Dry the precipitation on an ultra-clean workbench or in an incubator below 64°C until it becomes translucent;
(10)用50μL TE或者灭菌的超纯水溶解,取1μL DNA用德国公司生产的核酸蛋白测定仪测定的浓度,-20℃放置备用。(10) Dissolve with 50 μL of TE or sterilized ultrapure water, take 1 μL of DNA to measure the concentration with a nucleic acid protein analyzer produced by a German company, and store at -20°C for later use.
2染色体步移法扩增CpSNAC1基因上游序列2. Amplification of upstream sequence of CpSNAC1 gene by chromosome walking method
(1)引物设计(1) Primer design
利用研究室构建的蜡梅花转录组数据库(SRA,http://www.ncbi.nlm.nih.gov/Traces/sra.登录号SRA106143)获得CpSNAC1Unigene片段,根据所获得的Unigene序列通过RACE PCR分别获得5’-UTR和3’-UTR,经过序列拼接后,得到完整cDNA序列。CpSNAC1基因的cDNA全长为1008bp,该基因cDNA含有一个871bp编码297个氨基酸的开放阅读框。以该基因871bp的开放阅读框为基础,利用基因步移法扩增未知片段原则,运用软件Primer Premier5.0,设计2条下游特异引物进行PCR扩增,引物序列如下:The CpSNAC1 Unigene fragment was obtained by using the Prunus chinensis transcriptome database (SRA, http://www.ncbi.nlm.nih.gov/Traces/sra. Accession No. SRA106143) constructed by the laboratory, and obtained by RACE PCR according to the obtained Unigene sequence. 5'-UTR and 3'-UTR, after sequence splicing, obtain the complete cDNA sequence. The full-length cDNA of CpSNAC1 gene is 1008 bp, and the cDNA of this gene contains an open reading frame of 871 bp encoding 297 amino acids. Based on the 871bp open reading frame of the gene, using the principle of gene walking method to amplify unknown fragments, and using the software Primer Premier5.0, two downstream specific primers were designed for PCR amplification. The primer sequences are as follows:
NAC1-SP1:5'-gctcttcctccatctcattctccctgc-3'(SEQ ID No.5)NAC1-SP1: 5'-gctcttcctccatctcattctccctgc-3' (SEQ ID No. 5)
NAC1-SP2:5'-gaacagcaatcggttgtgaggcg-3'(SEQ ID No.6)NAC1-SP2: 5'-gaacagcaatcggttgtgaggcg-3' (SEQ ID No. 6)
(2)基因组步移酶切模板的构建(2) Construction of genome walking enzyme digestion template
基因组DNA步移文库参照Genome WalkerTM Universal Kit中的说明书进行。取蜡梅基因组DNA各1μg,分别采用DraⅠ、EcoRⅤ、PvuⅡ和StuⅠ4种平末端酶消化,然后将酶切产物进行纯化处理,然后用T4-DNA连接酶(TaKaRa,大连)将产物与试剂盒的上、下游基因组步移衔接头在16℃水浴中进行过夜连接,构建了4个基因组步移文库,蜡梅基因组DNA的DraⅠ、EcoRⅤ、PvuⅡ和StuⅠ酶切模板。Genomic DNA walking of the library was performed according to the instructions in the Genome Walker ™ Universal Kit. Take 1 μg of each quince genomic DNA, digest it with four blunt-end enzymes DraⅠ, EcoRⅤ, PvuⅡ and StuⅠ, and then purify the digested product, and then use T4-DNA ligase (TaKaRa, Dalian) to ligate the product with the kit's DNA. The upstream and downstream genome walking adapters were ligated overnight in a 16°C water bath to construct four genome walking libraries. The templates of DraⅠ, EcoRⅤ, PvuⅡ and StuⅠ were digested from the genomic DNA of Prunus chinensis.
(3)PCR反应(3) PCR reaction
采用两轮巢式Touch-Down PCR,反应体系(25μL)。Two rounds of nested Touch-Down PCR were used in a reaction system (25 μL).
以NAC1-SP1和针对衔接头序列的引物AP1(Universal Genome WalkerTM 2.0UserManual试剂盒)进行第一轮PCR扩增:10×Buffer 2.5μL,2.5mM dNTP0.5μL,引物AP1(10μmol/L)0.5μL,引物SP1(10μmol/L)0.5μL,Taq DNA聚合酶0.5μL,模板1.0μL,ddH2O 19.5μL。The first round of PCR amplification was performed with NAC1-SP1 and primer AP1 (Universal Genome Walker ™ 2.0 User Manual kit) for the adaptor sequence: 10×Buffer 2.5 μL, 2.5 mM dNTP 0.5 μL, primer AP1 (10 μmol/L) 0.5 μL, primer SP1 (10 μmol/L) 0.5 μL, Taq DNA polymerase 0.5 μL, template 1.0 μL, ddH 2 O 19.5 μL.
将第一轮产物稀释50倍,作为第二轮反应的模板。The first-round product was diluted 50-fold and used as a template for the second-round reaction.
以NAC1-SP2和针对衔接头序列的引物AP2(Universal Genome WalkerTM 2.0UserManual试剂盒)进行第二轮PCR扩增:10×Buffer 2.5μL,2.5mM dNTP0.5μL,引物AP2(10μmol/L)0.5μL,引物SP2(10μmol/L)0.5μL,Taq DNA聚合酶0.5μL,模板1.0μL,ddH2O 19.5μL。The second round of PCR amplification was performed with NAC1-SP2 and primer AP2 (Universal Genome Walker ™ 2.0 User Manual kit) for the adapter sequence: 10×Buffer 2.5 μL, 2.5 mM dNTP 0.5 μL, primer AP2 (10 μmol/L) 0.5 μL, primer SP2 (10 μmol/L) 0.5 μL, Taq DNA polymerase 0.5 μL, template 1.0 μL, ddH 2 O 19.5 μL.
PCR扩增条件:94℃25sec,72℃3min,第一轮7个循环;94℃25sec,67℃3min,第一轮32循环;67℃10min。94℃25sec,72℃3min,第一轮5个循环;94℃25sec,67℃3min,第一轮20循环;67℃10min。PCR amplification conditions: 94°C for 25sec, 72°C for 3min, the first round of 7 cycles; 94°C for 25sec, 67°C for 3min, the first round of 32 cycles; 67°C for 10min. 94°C for 25sec, 72°C for 3min, the first round of 5 cycles; 94°C for 25sec, 67°C for 3min, the first round of 20 cycles; 67°C for 10min.
将PCR产物回收后连接到T载体,转化大肠杆菌感受态细胞,挑取重组子进行测序,测序结果运用DNAstar软件进行分析。The PCR products were recovered and connected to T vector, transformed into E. coli competent cells, and the recombinants were picked for sequencing. The sequencing results were analyzed by DNAstar software.
将所得的蜡梅CpSNAC1基因上游启动子序列用在线启动子序列分析软件PlantCARE(http://bioinformatics.psb.ugent.be/webtools/plantcare/html)和PLACE(http://www.dna.affrc.go.jp/PLACE)进行分析,寻找该启动子保守区域中潜在的转录调控元件。The obtained upstream promoter sequence of the CpSNAC1 gene of Prunus chinensis was analyzed by the online promoter sequence analysis software PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html) and PLACE (http://www.dna.affrc .go.jp/PLACE) to search for potential transcriptional regulatory elements in the conserved regions of this promoter.
结果显示,通过染色体步移法,从蜡梅基因组中扩增到CpSNAC1基因上游1437bp的启动子序列(SEQ ID No.15)。该启动子序列含有大量的TATA-box、CAAT-box等启动子基本元件和植物基因相关的光答应元件,以及提高转录水平的5’UTR Py-rich stretch,脱落酸响应元件ABRE、水杨酸响应元件TCA-element、生长素响应元件AuxRR-core、赤霉素响应元件GARE-motif、涉及干旱的MYB结合位点MBS以及防御和应激的响应元件TC-rich repeats等(图2)。The results showed that the 1437 bp promoter sequence (SEQ ID No. 15) upstream of the CpSNAC1 gene was amplified from the Prunus chinensis genome by the chromosome walking method. The promoter sequence contains a large number of TATA-box, CAAT-box and other basic promoter elements and plant gene-related light-permissive elements, as well as 5'UTR Py-rich stretch that increases the transcription level, abscisic acid response elements ABRE, salicylic acid The response element TCA-element, the auxin response element AuxRR-core, the gibberellin response element GARE-motif, the MYB binding site MBS involved in drought, and the defense and stress response element TC-rich repeats, etc. (Fig. 2).
3 CpSNAC1基因启动子缺失片段的克隆3 Cloning of the deletion fragment of the CpSNAC1 gene promoter
根据已知的CpSNAC1基因启动子序列的顺式作用元件分析,对其进行缺失分段(图3)。于CpSNAC1编码区起始密码子上游约1228bp,742bp,471bp处设计正向引物,反向引物与上节CpSNAC1基因启动子全长序列反向引物相同,命名为CpSNAC1-D1-F,CpSNAC1-D2-F,CpSNAC1-D3-F,CpSNAC1-nco1-R。Deletion segmentation was performed based on cis-acting element analysis of the known promoter sequences of the CpSNAC1 gene (Figure 3). The forward primers were designed at about 1228bp, 742bp, and 471bp upstream of the start codon of the CpSNAC1 coding region. The reverse primers were the same as the reverse primers of the full-length sequence of the CpSNAC1 gene promoter in the previous section, named CpSNAC1-D1-F, CpSNAC1-D2 -F, CpSNAC1-D3-F, CpSNAC1-nco1-R.
所获得的缺失序列与全长序列的对比示意见图4,CpSNAC1基因启动子特异引物设计如下:The comparison between the obtained deletion sequence and the full-length sequence is shown in Figure 4, and the CpSNAC1 gene promoter-specific primers are designed as follows:
CpSNAC1-D1-F:aactgcagcaagtagggctaaataacccatttacc(PstΙ酶切位点)(SEQ IDNo.7)CpSNAC1-D1-F: aactgcagcaagtagggctaaataacccatttacc (Pst1 restriction site) (SEQ ID No. 7)
CpSNAC1-D2-F:aactgcagatgttgttgcacgagcgatcaat(PstΙ酶切位点)(SEQ IDNo.8)CpSNAC1-D2-F: aactgcagatgttgttgcacgagcgatcaat (Pst1 restriction site) (SEQ ID No. 8)
CpSNAC1-D3-F:aactgcaggttttccaacacgagccctctct(PstΙ酶切位点)(SEQ IDNo.9)CpSNAC1-D3-F: aactgcaggttttccaacacgagccctctct (Pst1 restriction site) (SEQ ID No. 9)
CpSNAC1-nco1-R:catgccatgggaacagcaatcggttgtgaggc(NcoΙ酶切位点)(SEQ IDNo.10)CpSNAC1-nco1-R: catgccatgggaacagcaatcggttgtgaggc (Nco1 restriction site) (SEQ ID No. 10)
以pMD 19-T-CpSNAC1质粒为模板,用Taq酶进行PCR扩增。Using the pMD 19-T-CpSNAC1 plasmid as a template, PCR amplification was performed with Taq enzyme.
PCR反应体系反应体系如下:ddH2O 18.6μL,10×Toq Taq Buffer 2.5μL,2.5mMdNTP 1.5μL,CpNAC1-nco1-R(10μmol/L)1.0μL,CpNAC1-D1/D2/D3-F(10μmol/L)1.0μL,ToqTaq DNA聚合酶0.2μL,质粒0.2μL。PCR reaction system The reaction system is as follows: ddH 2 O 18.6 μL, 10×Toq Taq Buffer 2.5 μL, 2.5 mM dNTP 1.5 μL, CpNAC1-nco1-R (10 μmol/L) 1.0 μL, CpNAC1-D1/D2/D3-F (10 μmol /L) 1.0 μL, ToqTaq DNA polymerase 0.2 μL, plasmid 0.2 μL.
PCR扩增条件:CpNAC1-D1:94℃预变性5min;94℃变性30s,58℃退火30s,72℃延伸1min20s,28个循环;72℃延伸10min。CpNAC1-D2:94℃预变性5min;94℃变性30s,58℃退火30s,72℃延伸1min,28个循环;72℃延伸10min。CpNAC1-D3:94℃预变性5min;94℃变性30s,58℃退火30s,72℃延伸40s,28个循环;72℃延伸10min。PCR amplification conditions: CpNAC1-D1: pre-denaturation at 94°C for 5 min; denaturation at 94°C for 30s, annealing at 58°C for 30s, extension at 72°C for 1min 20s, 28 cycles; extension at 72°C for 10 min. CpNAC1-D2: pre-denaturation at 94°C for 5 min; denaturation at 94°C for 30 s, annealing at 58°C for 30 s, extension at 72°C for 1 min, 28 cycles; extension at 72°C for 10 min. CpNAC1-D3: pre-denaturation at 94 °C for 5 min; denaturation at 94 °C for 30 s, annealing at 58 °C for 30 s, extension at 72 °C for 40 s, 28 cycles; extension at 72 °C for 10 min.
注:本步使用的DNA提取试剂盒购自天根生化科技(北京)有限公司;基因步移法试剂盒(Universal Genome WalkerTM 2.0 User Manual)、DraⅠ、EcoRⅤ、PvuⅡ和StuⅠ酶购自日本TaKaRa公司(大连)。Note: The DNA extraction kit used in this step was purchased from Tiangen Biochemical Technology (Beijing) Co., Ltd.; the gene walking kit (Universal Genome Walker TM 2.0 User Manual), DraⅠ, EcoRⅤ, PvuⅡ and StuⅠ enzymes were purchased from TaKaRa, Japan Company (Dalian).
将PCR产物回收后连接到T载体,转化大肠杆菌感受态细胞,挑取重组子进行测序。测序后最终获得CpSNAC1基因启动子各分段序列序列1223bp、711bp、464bp,命名为CpSNAC1pro-D1/D2/D3。The PCR product was recovered and then connected to the T vector, transformed into E. coli competent cells, and the recombinants were picked for sequencing. After sequencing, the sub-sequences of CpSNAC1 gene promoter of 1223bp, 711bp and 464bp were finally obtained, which were named CpSNAC1pro-D1/D2/D3.
实施例3蜡梅CpSNAC1启动子植物表达载体的构建Example 3 Construction of the plant expression vector of the CpSNAC1 promoter of Prunus chinensis
1表达载体的构建和验证1 Construction and verification of expression vector
根据CpSNAC1启动子序列和植物表达载体特性,选用植物表达载体1305,它是一个双元载体,含有GUS基因系统和CaMV35S启动子。为了研究CpSNAC1基因启动子的功能,用其替换植物表达载体1305中的35S启动子,与GUS报告基因融合,构建植物表达载体。用PstI和NcoI分别双酶切通过PCR扩增所得的CpSNAC1基因启动子及各缺失片段和1305载体,分别回收酶切产物后进行连接反应,将连接产物转化大肠杆菌TOP10,PCR和酶切鉴定阳性克隆,送测序,并命名为pcambial1305-CpSNAC1、pcambial1305-CpSNAC1-D1/D2/D3。将阳性质粒用电转法转入农杆菌GV3101,经PCR初步鉴定阳性菌落后提取其质粒进行酶切鉴定。According to the CpSNAC1 promoter sequence and the characteristics of the plant expression vector, the
双酶切及连接:Double digestion and ligation:
用PstI和NcoI限制性内切酶分别对CpSNAC1,CpSNAC1-D1,CpSNAC1-D2,CpSNAC1-D3中间载体和植物载体1305质粒进行双酶切。双酶切体系:10×Green Buffer 2.5μL,PstI0.5μL,NcoI 0.5μL,CpSNAC1/1305 5μL,ddH2O 11.5μL。37℃酶切4h后,80℃灭活5min。进行琼脂糖凝胶电泳分离酶切片段,用胶回收试剂盒回收目的片段。然后将回收得到的1305表达载体和CpSNAC1,CpSNAC1-D1,CpSNAC1-D2,CpSNAC1-D3片段,以1:8左右的比例,按照T4DNA连接酶说明书进行连接反应,4℃过夜连接。连接反应体系:1305表达载体片段7.5μL,CpSNAC1启动子片段1.2μL,10×T4DNA Ligase Buffer 1.0μL,T4DNA Ligase 0.3μL。CpSNAC1, CpSNAC1-D1, CpSNAC1-D2, CpSNAC1-D3 intermediate vector and
将连接产物转化大肠杆菌TOP10感受态细胞,涂布在含50mg/L Kan的LB平板上37℃倒置过夜培养,挑取单菌落摇菌培养后进行PCR鉴定,将电泳检测为阳性的菌液活化后提取质粒进行双酶切验证。最后再将PCR鉴定和双酶切验证均正确的阳性质粒送测序,确定无碱基突变后,命名为1305-CpSNAC1,1305-CpSNAC1-D1,1305-CpSNAC1-D2,1305-CpSNAC1-D3,即为CpSNAC1基因植物表达重组载体。The ligation product was transformed into E. coli TOP10 competent cells, spread on an LB plate containing 50 mg/L Kan, and incubated overnight at 37°C. Pick a single colony and shake it for culture, then carry out PCR identification, and activate the positive bacterial solution by electrophoresis. The plasmid was extracted and verified by double digestion. Finally, the positive plasmids with correct PCR identification and double-enzyme digestion verification were sent to sequencing, and after confirming no base mutation, they were named 1305-CpSNAC1, 1305-CpSNAC1-D1, 1305-CpSNAC1-D2, 1305-CpSNAC1-D3, namely Recombinant vector for plant expression of CpSNAC1 gene.
2表达载体转化农杆菌2. The expression vector transforms Agrobacterium
运用电转法将表达载体转入农杆菌GV3101中。The expression vector was transformed into Agrobacterium GV3101 by electroporation.
(1)先将电击杯置于75%的酒精中浸泡2h,然后用无菌水冲洗3次,再用无水乙醇浸泡冲洗3次,再将电击杯置于超净工作台上吹干后置于冰上预冷。(1) Soak the electric shock cup in 75% alcohol for 2 hours, then rinse with sterile water for 3 times, then soak and rinse with absolute ethanol for 3 times, and then place the electric shock cup on the ultra-clean workbench to dry it. Pre-chill on ice.
(2)从-80℃冰箱取出农杆菌感受态细胞GV3101,置于冰上解冻。(2) Take out the Agrobacterium competent cell GV3101 from the -80°C refrigerator, and place it on ice to thaw.
(3)取1μL质粒加入到100μL解冻的感受态细胞中,用枪头轻柔抽打混匀后冰上静置30min。(3) Add 1 μL of plasmid to 100 μL of thawed competent cells, mix it gently with a pipette tip, and let it stand on ice for 30 min.
(4)组装电转化仪,并将其置于超净工作台上,打开仪器电源开关,将电压调至2240V。(4) Assemble the electroconversion instrument, place it on the ultra-clean workbench, turn on the power switch of the instrument, and adjust the voltage to 2240V.
(5)用移液枪将感受态细胞与重组质粒的混合物全部转移至电击杯凹槽中,擦干外壁。(5) Use a pipette to transfer all the mixture of competent cells and recombinant plasmids into the groove of the electric shock cup, and dry the outer wall.
(6)将电击杯放入电转化仪中,电击,听到一声蜂鸣声后,取出电击杯中,加入800μL预冷的无抗YEB液体培养基,轻轻抽打混匀。用移液枪将其转移到1.5mL的无菌离心管中。(6) Put the electric shock cup into the electrotransformer, shock, and after hearing a beep, take out the electric shock cup, add 800 μL of pre-cooled anti-anti-YEB liquid medium, and gently stir and mix. Transfer it to a 1.5 mL sterile centrifuge tube with a pipette.
(7)置于28℃摇床中,180rpm遮光振荡培养3~4h。(7) Place in a shaker at 28°C, and incubate with shaking at 180 rpm in the shade for 3 to 4 hours.
(8)吸取10μL菌液,用无菌涂棒将其均匀涂抹于YEB(含50mg/L Kan和50mg/L Gen)平板培养基上,于28℃恒温、黑暗条件下倒置培养36~48h。(8) Draw 10 μL of bacterial liquid, spread it evenly on YEB (containing 50mg/L Kan and 50mg/L Gen) plate medium with a sterile coating stick, and invert at 28°C under constant temperature and dark conditions for 36-48h.
(9)挑取单菌落,置于28℃摇床黑暗培养24~36h,进行PCR鉴定。阳性克隆可用于转化烟草或者拟南芥,或者加入终浓度20%的甘油,置于-80℃超低温冰箱保存。(9) Pick a single colony, place it on a shaker at 28°C for 24-36 hours in the dark, and carry out PCR identification. Positive clones can be used to transform tobacco or Arabidopsis, or add a final concentration of 20% glycerol and store in -80°C ultra-low temperature freezer.
注:本步使用的农杆菌感受态GV3101、表达载体pcambia1305.1由西南大学园林花卉研究所保存;T4DNA连接酶、ExTaq酶、Top聚合酶均购自日本TaKaRa公司(大连)。Note: Agrobacterium-competent GV3101 and expression vector pcambia1305.1 used in this step were preserved by the Institute of Garden and Flowers, Southwest University; T4 DNA ligase, ExTaq enzyme, and Top polymerase were purchased from Japan TaKaRa Company (Dalian).
实施例4蜡梅CpSNAC1启动子及其缺失序列发育时空表达特性和诱导表达特性分析Example 4 Analysis of developmental spatiotemporal expression characteristics and inducible expression characteristics of CpSNAC1 promoter and its deletion sequence
1花序侵染法转化拟南芥1 Transformation of Arabidopsis thaliana by inflorescence infection
(1)拟南芥的播种及培养(1) Sowing and cultivation of Arabidopsis
取适量拟南芥种子于1.5mL离心管中,并向离心管中加入16.7%浓度的次氯酸钠(NaClO)消毒8~10min(期间充分振荡),用枪头将上层的NaClO溶液洗掉,然后无菌水将种子冲洗4~6次,再用移液枪将拟南芥的种子播种在MS培养基上,4℃春化3d后将平板置于16h光照,8h黑暗,2000Lux照明条件,以及22℃、70%湿度的环境下培养,约12d左右将拟南芥移栽至培养基质中(蚯蚓土:蛭石:草炭=1:1:1),待拟南芥生长到花葶长度约5cm左右时进行侵染。Take an appropriate amount of Arabidopsis thaliana seeds into a 1.5mL centrifuge tube, add 16.7% sodium hypochlorite (NaClO) to the centrifuge tube for 8-10 minutes (full shaking during the period), and use a pipette tip to wash off the upper layer of NaClO solution, and then no Rinse the seeds with bacterial water for 4-6 times, and then use a pipette to sow the seeds of Arabidopsis thaliana on MS medium. After vernalization at 4 °C for 3 days, the plate is placed in 16h light, 8h dark, 2000Lux lighting conditions, and 22 hours. Cultivated in an environment of ℃ and 70% humidity, and transplanted Arabidopsis thaliana into a culture medium (earthworm soil: vermiculite: peat = 1:1:1) about 12 days, and waited for Arabidopsis to grow to a scape length of about 5cm Infection occurs when left and right.
(2)花序侵染法转化拟南芥(2) Transformation of Arabidopsis by inflorescence infection
①在YEB+Kan50mg/L+Gen50mg/L培养基平板上活化含有植物超表达载体质粒的农杆菌,28℃暗培养36~48h。①Activate the Agrobacterium containing the plant overexpression vector plasmid on the YEB+Kan50mg/L+Gen50mg/L medium plate, and cultivate it in the dark at 28°C for 36-48h.
②挑取单菌落接种到650μL YEB(Kan:50mg/L,Gen:50mg/L)液体培养基中,28℃,200rpm振荡培养24h。②A single colony was picked and inoculated into 650 μL YEB (Kan: 50 mg/L, Gen: 50 mg/L) liquid medium, and cultured with shaking at 28° C. and 200 rpm for 24 h.
③对培养的农杆菌菌液用特异引物进行PCR鉴定,确定正确后取500μL上述菌液接种于25mL无抗的YEB液体培养基上,28℃,200rpm振荡培养至OD600为0.8~1.0之间备用。③ Carry out PCR identification of the cultured Agrobacterium liquid with specific primers. After confirming that it is correct, take 500 μL of the above bacterial liquid and inoculate it on 25 mL of YEB liquid medium without antibiotics, 28 ° C, 200 rpm shaking culture until the OD600 is between 0.8 and 1.0 for later use .
④吸取10mL上述菌液于无菌离心管,28℃,5000rpm离心15min,倒掉上清,收集沉淀,然后用现配侵染液(无菌水+5%蔗糖+0.5‰L-77)重悬,稀释至OD600约为0.8。④Aspirate 10mL of the above bacterial solution into a sterile centrifuge tube, centrifuge at 28°C, 5000rpm for 15min, pour off the supernatant, collect the precipitate, and then reconstitute it with the currently prepared infection solution (sterile water + 5% sucrose + 0.5‰L-77). Suspended and diluted to an OD600 of about 0.8.
⑤初次侵染要剪去拟南芥植株上面已开放的花朵,只留下刚刚露白的花蕾,此外可以在处理前一天浇水以保持基质的湿度,侵染前也需要用喷壶将纸箱四壁喷湿。将花葶头大约0.5cm长度放入到浸入侵染液中10秒左右,取出放入纸箱中,避光,于22℃培养20h后取出,然后转移到正常的生长环境中。⑤ For the first infection, cut off the flowers that have opened on the Arabidopsis plant, leaving only the white buds. In addition, you can water the day before treatment to maintain the humidity of the substrate. Before infection, you need to use a watering can to clean the four walls of the carton. Spray wet. Put the scape head about 0.5cm in length into the immersion dyeing solution for about 10 seconds, take it out and put it in a carton, protect it from light, incubate it at 22°C for 20h, take it out, and then transfer it to a normal growth environment.
⑥侵染1周后可进行二次侵染以提高转化效率。⑥Secondary infection can be carried out after 1 week of infection to improve the transformation efficiency.
2转基因拟南芥的潮霉素抗性筛选及鉴定2 Screening and identification of hygromycin resistance in transgenic Arabidopsis
2.1转基因潮霉素Hyg筛选和PCR检测2.1 Transgenic Hygromycin Hyg Screening and PCR Detection
(1)在转化拟南芥1个月后,收取成熟的T0代种子,放在37℃恒温烘箱中约15d后,放于4度冰箱存储,用于后续实验。(1) One month after the transformation of Arabidopsis thaliana, the mature T0 generation seeds were collected, placed in a constant temperature oven at 37°C for about 15 days, and then stored in a 4°C refrigerator for subsequent experiments.
(2)将T0代转基因种子进行消毒后,播种于含25mg/L Hyg的MS平板上,密封后于4℃冰箱春化3d,然后转移到正常环境下培养,转基因拟南芥可以在含Hyg的培养基上正常生长。(2) After sterilizing the transgenic seeds of T0 generation, they were sown on MS plates containing 25 mg/L Hyg, sealed and vernalized in a refrigerator at 4°C for 3 days, and then transferred to a normal environment for cultivation. grows normally on the medium.
(3)得到若干不同株系,并对各株系的T1、T2代种子继续筛选,直至所有株系收获的种子播种后都为绿色抗性苗即可进行后续处理实验。(3) Obtain several different lines, and continue to screen the T1 and T2 generation seeds of each line until the seeds harvested from all lines are green resistant seedlings after sowing, and then the follow-up treatment experiment can be carried out.
以阳性植株的DNA作为模板,进行PCR检查,确认转基因植株中是否有插入的目的片段。Using the DNA of the positive plant as a template, PCR was performed to confirm whether the target fragment was inserted in the transgenic plant.
2.2转基因拟南芥GUS化学染色检测2.2 GUS chemical staining detection of transgenic Arabidopsis
对经潮霉素抗性筛选获得的转基因拟南芥植株进行GUS组织化学染色鉴定以野生型拟南芥植株为阴性对照,转1305空载体的转基因拟南芥植株为阳性对照。The transgenic Arabidopsis plants screened for hygromycin resistance were identified by GUS histochemical staining. The wild-type Arabidopsis plants were used as negative controls, and the transgenic Arabidopsis plants transformed with 1305 empty vector were used as positive controls.
(1)染色:取播种12d大小的拟南芥幼苗于1.5mL离心管中,加入配制好的GUS染液,使之完全淹没材料,置于37℃恒温箱中避光过夜染色。(1) Staining: Take 12d seedlings of Arabidopsis thaliana in a 1.5mL centrifuge tube, add the prepared GUS staining solution to completely submerge the material, and place in a 37°C incubator for overnight staining in the dark.
(2)脱色:取出样品,吸除染液,加入75%的乙醇进行脱色,脱色2~3次,至阴性对照为白色。(2) Decolorization: Take out the sample, suck off the dye solution, add 75% ethanol to decolorize, and
(3)观察鉴定:用实体显微镜观察转化材料的GUS染色结果,并照相记录结果。(3) Observation and identification: The GUS staining results of the transformed materials were observed with a solid microscope, and the results were recorded by photographing.
3 CpSNAC1基因启动子及各缺失片段在烟草叶片中瞬时表达3 Transient expression of CpSNAC1 gene promoter and each deletion fragment in tobacco leaves
以GV3101空菌株为阴性对照,含CaMV35S启动子1305菌株为阳性对照,利用农杆菌介导法分别转化烟草,进行GUS瞬时表达鉴定。The GV3101 empty strain was used as the negative control, and the 1305 strain containing the CaMV35S promoter was used as the positive control.
(1)农杆菌侵染液的准备(1) Preparation of Agrobacterium infection solution
①从-80℃超低温冰箱取出成功转化的阳性农杆菌菌液、GV3101空菌株以及含1305载体的菌株,待解冻后,用灼烧灭菌冷却后的接种环沾取少量菌液,分别接种于含有50mg/L Kan和50mg/L Gen的YEB固体培养基平板上,置于28℃、黑暗条件下倒置培养36~48h。① Take out the successfully transformed positive Agrobacterium strain, GV3101 empty strain and strain containing 1305 vector from the -80°C ultra-low temperature refrigerator. On the YEB solid medium plate containing 50mg/L Kan and 50mg/L Gen, placed at 28°C and cultured upside down in the dark for 36-48h.
②挑取大小合适的单菌落接种于25mL含有50mg/L Kan和50mg/L Gen的YEB液体培养基中,置于28℃恒温黑暗条件下振荡培养24~36h。②Pick a single colony of suitable size and inoculate it into 25 mL of YEB liquid medium containing 50 mg/L Kan and 50 mg/L Gen, and place it under constant temperature and dark conditions at 28°C for 24-36 h with shaking.
③取上述培养好的菌液按1:50接种于YEB无抗液体培养液中,28℃,200rpm避光振荡培养,进行二次活化。③ Take the above-mentioned cultured bacterial solution and inoculate it into YEB non-antibody liquid culture solution at 1:50, 28 ° C, 200 rpm dark-shaking culture, and perform secondary activation.
④当菌液OD600=0.6~0.8时,停止振荡培养,分别取8mL培养好的菌液和30mLMS1液体培养基于无菌培养瓶中,混匀备用,该混合液即为用于侵染烟草所用的侵染液。④When bacterial liquid OD600=0.6~0.8, stop shaking culture, take 8mL cultured bacterial liquid and 30mL MS1 liquid culture respectively based on aseptic culture bottle, mix evenly for later use, this mixed solution is used for infecting tobacco. infection fluid.
(2)植物材料准备:选取生长健壮的烟草无菌组培苗叶片,用锋利的无菌手术刀片切成1cm左右的叶块,并弃去中脉。(2) Plant material preparation: Select the leaves of robust tobacco aseptic tissue culture seedlings, cut them into leaf pieces of about 1 cm with a sharp sterile surgical blade, and discard the midrib.
(3)侵染:将新制备的叶块分别置于已准备好的上述三种农杆菌侵染液中,遮光浸泡10min,该过程中轻轻晃动组培瓶使叶块与侵染液充分接触。(3) Infection: The newly prepared leaf pieces were placed in the prepared three kinds of Agrobacterium infection solutions, respectively, and soaked in shading for 10 minutes. During this process, the tissue culture bottle was gently shaken to make the leaf pieces and the infection solution fully touch.
(4)共培养:取出叶块,置于无菌滤纸上吸去多余的菌液。并将侵染过的叶块转移到MS2培养基上,叶块的背面朝下放置,25℃倒置暗培养2~3d。(4) Co-cultivation: Take out the leaf block and place it on sterile filter paper to absorb excess bacterial liquid. The infected leaf blocks were transferred to MS2 medium, the back of the leaf blocks was placed down, and incubated in the dark at 25°C for 2-3 days.
(5)脱菌:将共培养后的烟草叶片转移到MS3液体脱菌培养基中,避光脱菌30min,期间轻轻晃动培养瓶,使叶块与脱菌液完全充分接触,之后将叶片置于无菌滤纸上吸除多余的液体。(5) Degermination: transfer the co-cultivated tobacco leaves to MS3 liquid degerming medium, and sterilize in the dark for 30 minutes. During this period, the culture bottle is gently shaken to make the leaf pieces fully contact with the sterilizing liquid, and then the leaves are sterilized. Place on sterile filter paper to remove excess fluid.
(6)重复步骤(5)。(6) Repeat step (5).
(7)将叶块置于无菌水中冲洗3次,每次10min,再用无菌滤纸吸干多余液体。(7) Rinse the leaf block in sterile water for 3 times, 10 minutes each time, and then dry the excess liquid with sterile filter paper.
(8)GUS瞬时染色检测:随机抽取处理好的叶块进行GUS染色分析,将待测植物组织置于1.5mL离心管中,加入GUS染色液,置于37℃烘箱过夜后,用75%的乙醇进行脱色处理,脱色处理2~3次,每次10min,至阴性对照为白色时用实体显微镜进行观察,并照相记录结果。(8) GUS transient staining detection: randomly extract the treated leaf pieces for GUS staining analysis, place the plant tissue to be tested in a 1.5 mL centrifuge tube, add GUS staining solution, and place it in a 37°C oven overnight, then use 75% Decolorize with ethanol, 2-3 times for 10min each time, observe with a solid microscope when the negative control is white, and record the results by photographing.
4转基因拟南芥的GUS组织化学染色分析4. GUS histochemical staining analysis of transgenic Arabidopsis
(1)取播种后1~10d发芽过程的拟南芥于1.5mL离心管中,加入配制好的组织化学GUS染液,置于37℃恒温箱中过夜染色。用75%乙醇脱色2~3次,然后在体式显微镜下观察拍照,同时以野生型拟南芥作为阴性对照,转1305载体作为阳性对照。(1) The Arabidopsis thaliana germinated 1 to 10 days after sowing was placed in a 1.5 mL centrifuge tube, and the prepared histochemical GUS staining solution was added, and placed in a 37°C incubator for overnight staining. Destain with 75% ethanol for 2 to 3 times, then observe and take pictures under a stereomicroscope. At the same time, wild-type Arabidopsis is used as a negative control, and 1305 vector is used as a positive control.
(2)为了研究CpSNAC1启动子驱动GUS基因在拟南芥植株中的各组织表达特异性,采集成年转基因拟南芥植株的根、茎、叶、花级果进行GUS组织化学染色分析。(方法同上)。5CpSNAC1pro转基因拟南芥非生物胁迫GUS基因荧光定量分析(2) In order to study the expression specificity of CpSNAC1 promoter-driven GUS gene in each tissue of Arabidopsis plants, the roots, stems, leaves and flowers of adult transgenic Arabidopsis plants were collected for GUS histochemical staining analysis. (The method is the same as above). Fluorescence quantitative analysis of GUS gene in 5CpSNAC1pro transgenic Arabidopsis under abiotic stress
为了研究启动子在翻译水平上对不同诱导的响应情况,在MS培养基播种需要处理的各个株系,10d时选择长势大致一致的健壮转基因拟南芥,分别移入含有50μM·L-1的ABA、150mM·L-1NaCl、10%PEG的MS培养基培养24h,在选取长势大致一致的健壮转基因拟南芥放入42℃高温和4℃低温人工气候箱处理6h和24h,各组实验设置3个重复。处理后取样提取RNA,反转为cDNA进行荧光定量PCR检测,分析CpSNAC1启动子是否受激素诱导。In order to study the response of the promoter to different inductions at the translation level, each line to be treated was sown in MS medium, and robust transgenic Arabidopsis thaliana with roughly the same growth was selected at 10 d, and then transferred into ABA containing 50 μM·L -1 respectively. , 150mM·L -1 NaCl, 10% PEG MS medium for 24h, select robust transgenic Arabidopsis with roughly the same growth and put them into 42℃ high temperature and 4℃ low temperature artificial climate box for 6h and 24h, each group of experimental settings 3 repetitions. After treatment, samples were taken to extract RNA, which was reversed to cDNA for fluorescence quantitative PCR detection to analyze whether the CpSNAC1 promoter was induced by hormones.
选用拟南芥Actin基因作为内参基因,设计内参基因和GUS基因,引物序列见表2。The Arabidopsis Actin gene was selected as the internal reference gene, and the internal reference gene and GUS gene were designed. The primer sequences are shown in Table 2.
表2引物序列Table 2 Primer sequences
采用Trizol试剂提取总RNA,反转录得到cDNA第一链。以cDNA为模板,采用EvaGreen染料法进行荧光定量PCR,3次技术重复。实验按照SsoFastTM Supermix试剂盒(Bio-Rad)说明书进行,对转基因植株不同非生物胁迫下幼苗叶片中的表达情况进行实时荧光定量PCR分析。试验所得的数据用Bio-Rad ManagerTM Software(Versio n 1.1)分析,用法计算CpSNAC1启动子启动下游GUS基因在不同材料中的相对表达量。反应体系如下:2×SsoFastEvaGreen Supermix 5μL,Primer-F(10μM)0.5μL,Primer-R(10μM)0.5μL,cDNA模板0.5μL,RNase Free dH2O 3.5μL。Total RNA was extracted with Trizol reagent, and the first strand of cDNA was obtained by reverse transcription. Fluorescence quantitative PCR was performed using EvaGreen dye method with cDNA as template, and the technique was repeated three times. Experiments according to SsoFast TM Supermix kit (Bio-Rad) was used to perform real-time quantitative PCR analysis on the expression of transgenic plants in seedling leaves under different abiotic stresses. The data obtained from the experiments were analyzed with Bio-Rad Manager ™ Software (Version 1.1) using The relative expression of the downstream GUS gene promoted by the CpSNAC1 promoter in different materials was calculated by the method. The reaction system is as follows: 5 μL of 2×SsoFastEvaGreen Supermix, 0.5 μL of Primer-F (10 μM), 0.5 μL of Primer-R (10 μM), 0.5 μL of cDNA template, and 3.5 μL of RNase Free dH 2 O.
6转基因拟南芥各组织及非生物胁迫下GUS蛋白定量检测6 Quantitative detection of GUS protein in various tissues of transgenic Arabidopsis and under abiotic stress
采集成年转基因拟南芥植株的根、茎、叶、花及果荚进行GUS酶活性检测,同时为了研究启动子对不同诱导的响应情况,在MS培养基播种需要处理的各个株系,10d时选择长势大致一致的健壮转基因拟南芥,分别移入含有50μM·L-1的脱落酸(ABA)、150mM·L-1Nacl、10%PEG(模拟干旱)的MS培养基培养48h,在选取长势大致一致的健壮转基因拟南芥放入42℃高温和4℃低温人工气候箱处理6h和24h,处理后分别对其进行GUS蛋白的定量检测。The roots, stems, leaves, flowers and fruit pods of adult transgenic Arabidopsis thaliana plants were collected to detect GUS enzyme activity. At the same time, in order to study the response of the promoter to different induction, each line to be treated was sown in MS medium, and 10 days later Robust transgenic Arabidopsis thaliana with roughly the same growth vigor were selected and transferred into MS medium containing 50 μM·L -1 abscisic acid (ABA), 150 mM·L -1 NaCl, and 10% PEG (dry simulation) for 48 h. Robust transgenic Arabidopsis that were roughly the same were placed in an artificial climate chamber with a high temperature of 42 °C and a low temperature of 4 °C for 6 h and 24 h, and the quantitative detection of GUS protein was carried out respectively after treatment.
利用Varioskan Flash全波长扫描式多功能读数仪(多功能酶标仪),根据Bradford(1976)法进行总蛋白含量的测定,Li等(2009)的方法进行GUS酶活性的测定。Using the Varioskan Flash full-wavelength scanning multi-function reader (multi-function microplate reader), the total protein content was determined according to the method of Bradford (1976), and the enzyme activity of GUS was determined by the method of Li et al. (2009).
(1)蛋白标准曲线的制备(1) Preparation of protein standard curve
利用改良型Bradford法蛋白质浓度测定试剂盒取7支1.5mL离心管,按表3制作BSA蛋白浓度梯度:Use the modified Bradford method protein concentration determination kit to take seven 1.5mL centrifuge tubes, and prepare a BSA protein concentration gradient according to Table 3:
表3反应体系Table 3 Reaction system
混匀后,在多功能酶标仪上测定595nm处的光吸收值,制作标准曲线。After mixing, measure the light absorption value at 595nm on a multi-function microplate reader to make a standard curve.
(2)4-MU标准曲线的制作(2) Preparation of 4-MU standard curve
用4-MU和反应终止液根据表4配制4-MU梯度浓度液:Prepare 4-MU gradient concentration solution according to Table 4 with 4-MU and reaction stop solution:
表4反应体系Table 4 Reaction system
混匀后,运用多功能酶标仪在激发光365nm,发射光455nm,狭缝10nm条件下,测定各样品的荧光值,绘制标准曲线。After mixing, use a multifunctional microplate reader to measure the fluorescence value of each sample and draw a standard curve under the conditions of excitation light of 365 nm, emission light of 455 nm, and slit of 10 nm.
(3)GUS蛋白提取(3) GUS protein extraction
取100mg新鲜植物样品,采用液氮研磨的方式将其磨成粉末,立即收集到1.5mL离心管中,加入600μLGUS提取缓冲液,充分混匀后于12,000rpm,4℃离心10min,取上清于4℃冰箱保存备用。Take 100 mg of fresh plant samples, grind them into powder with liquid nitrogen, collect them immediately into a 1.5 mL centrifuge tube, add 600 μL of GUS extraction buffer, mix thoroughly and centrifuge at 12,000 rpm at 4 °C for 10 min, take the supernatant in Store in a 4°C refrigerator for later use.
(4)样品蛋白含量的测定(4) Determination of sample protein content
具体操作步骤参照改良型Bradford法蛋白质浓度测定试剂盒说明书:The specific operation steps refer to the instructions of the modified Bradford method protein concentration determination kit:
①分别取各样品蛋白上清10μL于1.5mL离心管中,加水至500μL后混匀。
②取按表3-3配制的0~30μg/mL的蛋白质溶液及①中样品稀释液各150μL,按顺序依次加入酶标板孔中。② Take the 0-30 μg/mL protein solution prepared according to Table 3-3 and 150 μL of the sample diluent in ①, and add them to the wells of the ELISA plate in sequence.
③再向各孔中加入150μL Bradford试剂,立即振荡混匀。③ Add 150 μL of Bradford reagent to each well, and immediately shake and mix.
④混匀后,于室温静置10min,期间需振荡混匀2次。④ After mixing, let it stand at room temperature for 10 minutes, during which time it is necessary to shake and
⑤10min后,在酶标仪上测定各样品的A595值。⑤After 10min, measure the A595 value of each sample on the microplate reader.
⑥重复步骤②~⑤2次,并计算出各样品的A595平均值。⑥
⑦以0~30μg/mL的蛋白质溶液的A595平均值为纵坐标,对应蛋白质浓度为横坐标,利用Microsoft Excel软件绘制标准曲线。⑦ With the average value of A595 of 0-30 μg/mL protein solution as the ordinate, and the corresponding protein concentration as the abscissa, use Microsoft Excel software to draw the standard curve.
⑧根据样品稀释液A595平均值,在标准曲线上确定出各样品稀释液的蛋白质浓度。⑧According to the average value of A595 of the sample diluent, determine the protein concentration of each sample diluent on the standard curve.
⑨根据公式:样品蛋白质浓度(μg/mL)=样品稀释液蛋白质浓度×50(样品稀释倍数)来计算各样品的蛋白质浓度。⑨ Calculate the protein concentration of each sample according to the formula: sample protein concentration (μg/mL) = sample diluent protein concentration × 50 (sample dilution factor).
(5)GUS酶活性的测定(5) Determination of GUS enzyme activity
取100μL含GUS的上清,加入到500μL在37℃预热的MUG(2mmol/L)溶液中,迅速充分混匀后立即取出50μL混合液加入到950uL反应终止液(0.2mol/L Na2CO3)中,作为酶促反应的0点。此后在15min、30min、45min和60min时分别取出50μL反应液,加入到950uL的终止液中终止反应。用多功能酶标仪在365nm处的激发波长和455nm处的发射波长下,测定各样品不同时间点的荧光值。以野生型拟南芥作为阴性对照,转化1305载体的转基因拟南芥为阳性对照,各样品均设置3个重复,在4-MU标准曲线上查出各样品的4-MU含量,最终各样品的荧光值取其平均值。Take 100 μL of GUS-containing supernatant, add it to 500 μL of MUG ( 2 mmol/L) solution preheated at 37°C, and mix it quickly and thoroughly. 3 ), as the 0 point of the enzymatic reaction. After that, 50 μL of the reaction solution was taken out at 15 min, 30 min, 45 min and 60 min, respectively, and added to 950 μL of stop solution to terminate the reaction. The fluorescence value of each sample at different time points was measured with a multifunctional microplate reader at the excitation wavelength at 365 nm and the emission wavelength at 455 nm. The wild-type Arabidopsis thaliana was used as a negative control, and the transgenic Arabidopsis thaliana transformed with the 1305 vector was used as a positive control. Three replicates were set for each sample, and the 4-MU content of each sample was detected on the 4-MU standard curve. The average value of the fluorescence value was taken.
(6)酶活力计算(6) Calculation of enzyme activity
根据各样品的光吸收值及对应荧光值求出单位时间内的GUS酶活性,GUS酶活力以每分钟每毫克蛋白酶活力表示(pmol·mg-1·min-1)。The GUS enzyme activity per unit time was calculated according to the light absorption value and corresponding fluorescence value of each sample, and the GUS enzyme activity was expressed as protease activity per milligram per minute (pmol·mg -1 ·min -1 ).
注:实验所用改良型Bradford法蛋白质浓度测定试剂盒、X-Gluc(5-bromo-4-chloro-3-indolyl-β-D-glucuronic acid)购自上海生物工程有限公司;4-MU、4-MUG来自Sigma公司产品;Varioskan Flash全波长扫描式多功能读数仪(多功能酶标仪)来自ThermoScientific公司。用于瞬时表达转化的烟草(Nicotiana tabacum L)组培苗、转化所用拟南芥的基因型为哥伦比亚系(Columbia,Co1)由西南大学园林花卉研究所提供。Note: The modified Bradford method protein concentration determination kit, X-Gluc (5-bromo-4-chloro-3-indolyl-β-D-glucuronic acid) used in the experiment were purchased from Shanghai Bioengineering Co., Ltd.; 4-MU, 4 -MUG is from Sigma Company; Varioskan Flash full-wavelength scanning multi-function reader (multi-function microplate reader) is from ThermoScientific Company. Tobacco (Nicotiana tabacum L) tissue culture seedlings used for transient expression transformation, and the genotype of Arabidopsis thaliana used for transformation were Columbia (Columbia, Co1) provided by the Institute of Garden and Flowers, Southwest University.
在烟草叶片中的瞬时表达结果显示,转CaMV35S启动子和转化pcambia1305-CpSNAC1,pcambia1305-CpSNAC1-D1,pcambia1305-CpSNAC1-D2,pcambia1305-CpSNAC1-D3的烟草叶片GUS化学组织染色后均有蓝色斑点呈现,而阴性对照没有蓝色斑点(图5),表明CpSNAC1基因启动子及其缺失序列CpSNAC1pro-D1、CpSNAC1pro-D2和CpSNAC1pro-D3都可驱动报告基因GUS表达。The results of transient expression in tobacco leaves showed that the tobacco leaves transfected with the CaMV35S promoter and transformed with pcambia1305-CpSNAC1, pcambia1305-CpSNAC1-D1, pcambia1305-CpSNAC1-D2, and pcambia1305-CpSNAC1-D3 had blue spots after GUS chemical histology staining. presented, while the negative control had no blue spots (Fig. 5), indicating that both the CpSNAC1 gene promoter and its deletion sequences CpSNAC1pro-D1, CpSNAC1pro-D2 and CpSNAC1pro-D3 can drive the expression of the reporter gene GUS.
对CpSNAC1基因启动子及其缺失序列转基因拟南芥种子萌发时期及成熟植株各组织进行GUS化学染色分析,结果如图,种子萌发时期各组织均能染上色(图6),成熟植株的根,茎,叶和花均能染上色,种子不能染上色(图7)。结果表明,CpSNAC1启动子及其缺失序列均具有驱动拟南芥从种子萌发至生长的整个进程中GUS基因表达的能力,无组织特异性。GUS chemical staining analysis was performed on the CpSNAC1 gene promoter and its deletion sequence transgenic Arabidopsis seed germination stage and each tissue of mature plants. , stems, leaves and flowers can be dyed, but seeds cannot be dyed (Figure 7). The results show that both the CpSNAC1 promoter and its deletion sequence have the ability to drive GUS gene expression in the whole process from seed germination to growth of Arabidopsis thaliana, without tissue specificity.
对CpSNAC1pro序列各处理前后的幼苗进行实时荧光定量PCR检测序列GUS基因表达。结果显示在ABA、NaCl和PEG处理后GUS基因表达量上调,4℃低温和42℃高温处理后GUS基因表达量降低(图8)。Real-time fluorescence quantitative PCR was performed on the seedlings before and after each treatment with CpSNAC1pro sequence to detect the expression of sequence GUS gene. The results showed that GUS gene expression was up-regulated after ABA, NaCl and PEG treatments, and decreased after 4°C low temperature and 42°C high temperature treatments (Fig. 8).
根据上述表3中配制的BSA蛋白标准液浓度梯度,运用改良型Bradford法蛋白质浓度测定试剂盒,在多功能酶标仪上测定595nm处的光吸收值。以BSA蛋白标准液浓度为横坐标,以A595吸光值为纵坐标,绘制蛋白质浓度标准曲线(图9)。蛋白浓度标准曲线的方差R2=0.9859,接近于1,说明样品蛋白质浓度与595nm处的光吸收值具有相关性,可以根据该标准曲线上的公式计算出某光吸收值的溶液中的蛋白浓度。According to the concentration gradient of the BSA protein standard solution prepared in Table 3 above, the light absorption value at 595 nm was measured on a multifunctional microplate reader by using the modified Bradford method protein concentration determination kit. With the concentration of BSA protein standard solution as the abscissa and the absorbance value of A595 as the ordinate, draw a protein concentration standard curve (Figure 9). The variance R 2 of the protein concentration standard curve is 0.9859, which is close to 1, indicating that the protein concentration of the sample has a correlation with the light absorption value at 595 nm, and the protein concentration in the solution with a certain light absorption value can be calculated according to the formula on the standard curve. .
根据表4狭缝10nm下的荧光强度。以吸光值为纵坐标,4-MU浓度(μM)为横坐标,绘制标准曲线(图10)。荧光标准曲线的R2=0.9924,接近于1,说明可以根据这个标准曲线的公式计算出相对荧光强度所对应的4-MU的浓度。Fluorescence intensity at slit 10 nm according to Table 4. Taking the absorbance value as the ordinate and the 4-MU concentration (μM) as the abscissa, a standard curve was drawn (Fig. 10). R 2 =0.9924 of the fluorescence standard curve, which is close to 1, indicating that the concentration of 4-MU corresponding to the relative fluorescence intensity can be calculated according to the formula of this standard curve.
对CpSNAC1基因启动子及其各缺失序列ABA、NaCl、PEG、4℃低温和42℃高温处理后的幼苗提取GUS蛋白进行酶活检测,结果显示CpSNAC1pro、CpSNAC1pro-D1片段在ABA、NaCl和PEG处理后GUS酶活性升高,在高温和低温处理后GUS酶活性降低;CpSNAC1pro-D2片段在5个不同胁迫处理后GUS酶活性均升高;CpSNAC1pro-D3片段在ABA处理后GUS酶活性升高,在NaCl处理后酶活几乎没变化,在PEG、高温和低温处理后酶活性均降低(图11)。The GUS protein extracted from seedlings treated with CpSNAC1 gene promoter and its deletion sequences ABA, NaCl, PEG, 4 ℃ low temperature and 42 ℃ high temperature was tested for enzymatic activity. The GUS enzyme activity increased after treatment, and the GUS enzyme activity decreased after high temperature and low temperature treatments; the GUS enzyme activity of the CpSNAC1pro-D2 fragment increased after five different stress treatments; the GUS enzyme activity of the CpSNAC1pro-D3 fragment increased after ABA treatment, The enzymatic activity was almost unchanged after NaCl treatment, and decreased after PEG, high temperature and low temperature treatments (Fig. 11).
对CpSNAC1基因启动子及其各缺失序列成年植株的、根、茎、叶、花、果进行GUS酶活性检测,结果显示不同片段的各个组织的GUS酶活性不一样,但在各个组织均有GUS酶活性,且在根中的活性是最高的。CpSNAC1pro-D2片段在所有片段中GUS酶活性是最高的(图12)。CpSNAC1pro-D3片段在PEG胁迫下受到抑制很有可能与该片段内不含与MYB干旱结合位点相关的顺式作用元件有关,在CpSNAC1pro-D3片段中顺式作用元件较少与胁迫相关的元件只含有ABA响应元件不含有防御和应激响应元件TC-rich repeats,所以只在ABA处理下GUS酶活性升高而NaCl处理下GUS酶活性没有变化。高低温下只有CpSNAC1pro-D2片段GUS酶活性是升高的,且该片段GUS染色颜色最深,是所有片段GUS酶活性最高的一个片段,推测CpSNAC1pro-D2片段对CpSNAC1基因启动子的活性具有重要影响。由此,可推测CpSNAC1基因启动子受逆境胁迫诱导能影响下游基因的表达水平,且CpSNAC1pro-D2片段对CpSNAC1基因启动子的活性具有重要影响。The GUS enzyme activity was detected in the adult plants, roots, stems, leaves, flowers and fruits of the CpSNAC1 gene promoter and its various deletion sequences. enzymatic activity, and the activity was highest in roots. The CpSNAC1pro-D2 fragment had the highest GUS enzymatic activity among all fragments (Figure 12). The inhibition of CpSNAC1pro-D3 fragment under PEG stress is probably related to the fact that the fragment does not contain cis-acting elements related to the MYB drought-binding site, and the cis-acting elements in the CpSNAC1pro-D3 fragment are less stress-related elements. Only ABA-responsive elements do not contain the defense and stress-responsive elements TC-rich repeats, so GUS enzyme activity is elevated only under ABA treatment but not under NaCl treatment. Only the GUS enzyme activity of the CpSNAC1pro-D2 fragment increased at high and low temperature, and the GUS staining of this fragment was the darkest, and it was the fragment with the highest GUS enzyme activity. . Therefore, it can be speculated that the induction of CpSNAC1 gene promoter by stress can affect the expression level of downstream genes, and the CpSNAC1pro-D2 fragment has an important effect on the activity of CpSNAC1 gene promoter.
序列表sequence listing
<110> 西南大学<110> Southwest University
<120> 蜡梅CpSNAC1基因启动子及其应用<120> CpSNAC1 gene promoter of Prunus chinensis and its application
<160> 15<160> 15
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
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<212> DNA<212> DNA
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gcagtggcag actcacatag cagattatag aagaaagaag aagaagaaga agaagaagat 60gcagtggcag actcacatag cagattatag aagaaagaag aagaagaaga agaagaagat 60
gagttgtaat ttgcagctgc ctcctggttt tagatttcac ccaacagatg aggaattggt 120gagttgtaat ttgcagctgc ctcctggttt tagatttcac ccaacagatg aggaattggt 120
actgcactat ttatgcaaga aatgcgcctc acaaccgatt gctgttccta taattgcaga 180actgcactat ttatgcaaga aatgcgcctc acaaccgatt gctgttccta taattgcaga 180
gattgatctt tataaatatg atccttggca acttcctgga aaggctcttt atggagaaaa 240gattgatctt tataaatatg atccttggca acttcctgga aaggctcttt atggagaaaa 240
ggaatggtac ttcttctctc cgagggaccg gaagtatccg aacgggtcaa ggcccaatcg 300ggaatggtac ttcttctctc cgagggaccg gaagtatccg aacgggtcaa ggcccaatcg 300
ggctgcagcg accggatatt ggaaggccac cggagccgat aagccaatta ggcccagtgg 360ggctgcagcg accggatatt ggaaggccac cggagccgat aagccaatta ggcccagtgg 360
aagtctaaag cctgttggaa tcaagaaggc cctggtcttt tatgctggaa aggccccaaa 420aagtctaaag cctgttggaa tcaagaaggc cctggtcttt tatgctggaa aggccccaaa 420
gggtgaaaag tccaactgga tcatgcacga atacaggctt gcagatgttg atcgctctgc 480gggtgaaaag tccaactgga tcatgcacga atacaggctt gcagatgttg atcgctctgc 480
taggaagaaa aatagtctaa ggctggacga ttgggtgttg tgtaggatct acaacaaaaa 540taggaagaaa aatagtctaa ggctggacga ttgggtgttg tgtaggatct acaacaaaaa 540
atggggtttg gaaggaaagc aaccaaaatc cagcatcaaa tgcagggaga atgagatgga 600atggggtttg gaaggaaagc aaccaaaatc cagcatcaaa tgcagggaga atgagatgga 600
ggaagagcat gtagagcaga agcctgaact tcttacaaat gcccatcaac ccatgactcc 660ggaagagcat gtagagcaga agcctgaact tcttacaaat gcccatcaac ccatgactcc 660
cattctcaac gatttcacct acttcgactc ggccgattcc atacccaggc tacaactcac 720cattctcaac gatttcacct acttcgactc ggccgattcc atacccaggc tacaactcac 720
cgattccagc tgctcggagc acgtggtttc ccccgagttc acctgcgaaa gggaggtcca 780cgattccagc tgctcggagc acgtggtttc ccccgagttc acctgcgaaa gggaggtcca 780
gagccagcca aagtggaaga gagactggaa caacaccctc cacatccctc ccattaacaa 840gagccagcca aagtggaaga gagactggaa caacaccctc cacatccctc ccattaacaa 840
catggatgcc accaatccct ttagtcagat ggacggtgtg gagctttctc cacttttccg 900catggatgcc accaatccct ttagtcagat ggacggtgtg gagctttctc cacttttccg 900
aattccgtca ttacaggaca tatccatgta cttgcagaag ccattctgat tgattctatg 960aattccgtca ttacaggaca tatccatgta cttgcagaag ccattctgat tgattctatg 960
ggccatccta tttctattct ttcatatgag ccaaccacac atatcac 1007ggccatccta tttctattct ttcatatgag ccaaccacac atatcac 1007
<210> 2<210> 2
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<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
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Met Ser Cys Asn Leu Gln Leu Pro Pro Gly Phe Arg Phe His Pro ThrMet Ser Cys Asn Leu Gln Leu Pro Pro Gly Phe Arg Phe His Pro Thr
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Asp Glu Glu Leu Val Leu His Tyr Leu Cys Lys Lys Cys Ala Ser GlnAsp Glu Glu Leu Val Leu His Tyr Leu Cys Lys Lys Cys Ala Ser Gln
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Pro Ile Ala Val Pro Ile Ile Ala Glu Ile Asp Leu Tyr Lys Tyr AspPro Ile Ala Val Pro Ile Ile Ala Glu Ile Asp Leu Tyr Lys Tyr Asp
35 40 45 35 40 45
Pro Trp Gln Leu Pro Gly Lys Ala Leu Tyr Gly Glu Lys Glu Trp TyrPro Trp Gln Leu Pro Gly Lys Ala Leu Tyr Gly Glu Lys Glu Trp Tyr
50 55 60 50 55 60
Phe Phe Ser Pro Arg Asp Arg Lys Tyr Pro Asn Gly Ser Arg Pro AsnPhe Phe Ser Pro Arg Asp Arg Lys Tyr Pro Asn Gly Ser Arg Pro Asn
65 70 75 8065 70 75 80
Arg Ala Ala Ala Thr Gly Tyr Trp Lys Ala Thr Gly Ala Asp Lys ProArg Ala Ala Ala Thr Gly Tyr Trp Lys Ala Thr Gly Ala Asp Lys Pro
85 90 95 85 90 95
Ile Arg Pro Ser Gly Ser Leu Lys Pro Val Gly Ile Lys Lys Ala LeuIle Arg Pro Ser Gly Ser Leu Lys Pro Val Gly Ile Lys Lys Ala Leu
100 105 110 100 105 110
Val Phe Tyr Ala Gly Lys Ala Pro Lys Gly Glu Lys Ser Asn Trp IleVal Phe Tyr Ala Gly Lys Ala Pro Lys Gly Glu Lys Ser Asn Trp Ile
115 120 125 115 120 125
Met His Glu Tyr Arg Leu Ala Asp Val Asp Arg Ser Ala Arg Lys LysMet His Glu Tyr Arg Leu Ala Asp Val Asp Arg Ser Ala Arg Lys Lys
130 135 140 130 135 140
Asn Ser Leu Arg Leu Asp Asp Trp Val Leu Cys Arg Ile Tyr Asn LysAsn Ser Leu Arg Leu Asp Asp Trp Val Leu Cys Arg Ile Tyr Asn Lys
145 150 155 160145 150 155 160
Lys Trp Gly Leu Glu Gly Lys Gln Pro Lys Ser Ser Ile Lys Cys ArgLys Trp Gly Leu Glu Gly Lys Gln Pro Lys Ser Ser Ile Lys Cys Arg
165 170 175 165 170 175
Glu Asn Glu Met Glu Glu Glu His Val Glu Gln Lys Pro Glu Leu LeuGlu Asn Glu Met Glu Glu Glu His Val Glu Gln Lys Pro Glu Leu Leu
180 185 190 180 185 190
Thr Asn Ala His Gln Pro Met Thr Pro Ile Leu Asn Asp Phe Thr TyrThr Asn Ala His Gln Pro Met Thr Pro Ile Leu Asn Asp Phe Thr Tyr
195 200 205 195 200 205
Phe Asp Ser Ala Asp Ser Ile Pro Arg Leu Gln Leu Thr Asp Ser SerPhe Asp Ser Ala Asp Ser Ile Pro Arg Leu Gln Leu Thr Asp Ser Ser
210 215 220 210 215 220
Cys Ser Glu His Val Val Ser Pro Glu Phe Thr Cys Glu Arg Glu ValCys Ser Glu His Val Val Ser Pro Glu Phe Thr Cys Glu Arg Glu Val
225 230 235 240225 230 235 240
Gln Ser Gln Pro Lys Trp Lys Arg Asp Trp Asn Asn Thr Leu His IleGln Ser Gln Pro Lys Trp Lys Arg Asp Trp Asn Asn Thr Leu His Ile
245 250 255 245 250 255
Pro Pro Ile Asn Asn Met Asp Ala Thr Asn Pro Phe Ser Gln Met AspPro Pro Ile Asn Asn Met Asp Ala Thr Asn Pro Phe Ser Gln Met Asp
260 265 270 260 265 270
Gly Val Glu Leu Ser Pro Leu Phe Arg Ile Pro Ser Leu Gln Asp IleGly Val Glu Leu Ser Pro Leu Phe Arg Ile Pro Ser Leu Gln Asp Ile
275 280 285 275 280 285
Ser Met Tyr Leu Gln Lys Pro PheSer Met Tyr Leu Gln Lys Pro Phe
290 295 290 295
<210> 3<210> 3
<211> 23<211> 23
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 3<400> 3
gttgtgaggc gcatttcttg cgt 23gttgtgaggc gcatttcttg cgt 23
<210> 4<210> 4
<211> 25<211> 25
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 4<400> 4
gcttctgctc tacatgctct tcctc 25gcttctgctc tacatgctct tcctc 25
<210> 5<210> 5
<211> 27<211> 27
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 5<400> 5
gctcttcctc catctcattc tccctgc 27gctcttcctc catctcattc tccctgc 27
<210> 6<210> 6
<211> 23<211> 23
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 6<400> 6
gaacagcaat cggttgtgag gcg 23gaacagcaat cggttgtgag gcg 23
<210> 7<210> 7
<211> 35<211> 35
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 7<400> 7
aactgcagca agtagggcta aataacccat ttacc 35aactgcagca agtagggcta aataacccat ttacc 35
<210> 8<210> 8
<211> 31<211> 31
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 8<400> 8
aactgcagat gttgttgcac gagcgatcaa t 31aactgcagat gttgttgcac gagcgatcaa t 31
<210> 9<210> 9
<211> 31<211> 31
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 9<400> 9
aactgcaggt tttccaacac gagccctctc t 31aactgcaggt tttccaacac gagccctctc t 31
<210> 10<210> 10
<211> 32<211> 32
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 10<400> 10
catgccatgg gaacagcaat cggttgtgag gc 32catgccatgg gaacagcaat cggttgtgag gc 32
<210> 11<210> 11
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 11<400> 11
catcctctgg gaaccactga ac 22catcctctgg gaaccactga ac 22
<210> 12<210> 12
<211> 21<211> 21
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 12<400> 12
catcacattg ctcgcttcgt t 21catcacattg ctcgcttcgt t 21
<210> 13<210> 13
<211> 25<211> 25
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 13<400> 13
gttatggttg ggatgggaca gaaag 25gttatggttg ggatgggaca gaaag 25
<210> 14<210> 14
<211> 22<211> 22
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 14<400> 14
gggcttcagt aaggaaacag ga 22gggcttcagt aaggaaacag ga 22
<210> 15<210> 15
<211> 1437<211> 1437
<212> DNA<212> DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence
<400> 15<400> 15
gagagttgga tgatgagaag aagatatttc atctattggg gtccacattg gccattgtta 60gagagttgga tgatgagaag aagatatttc atctattggg gtccacattg gccattgtta 60
tttgtcgggc gttaatgtaa tctatgtggg cccacgtatg atgtcgttga attgaaagat 120tttgtcgggc gttaatgtaa tctatgtggg cccacgtatg atgtcgttga attgaaagat 120
ctaaattcat gcatttgaaa ggagaaaaaa accaatgttg gccaaaagga taccttttct 180ctaaattcat gcatttgaaa ggagaaaaaa accaatgttg gccaaaagga taccttttct 180
tcaaagagta aaagctcttt cttcttttct ttgacaagta gggctaaata acccatttac 240tcaaagagta aaagctcttt cttcttttct ttgacaagta gggctaaata acccatttac 240
ccaattaaat aataacattc aaatccaacg atcaaatcat cctccacgta ggacatggcc 300ccaattaaat aataacattc aaatccaacg atcaaatcat cctccacgta ggacatggcc 300
attaataaat tataattacc aattgatacg acctcagccc caattcggtc tcatgacaat 360attaataaat tataattacc aattgatacg acctcagccc caattcggtc tcatgacaat 360
catattttac actttgcatt tcgtgattaa ctctttttta tctatattat ggatctaaaa 420catattttac actttgcatt tcgtgattaa ctctttttta tctatattat ggatctaaaa 420
aaatacaaaa tgtcaaataa aataaagatt ttatcattta attcttttaa ttatatttcc 480aaatacaaaa tgtcaaataa aataaagatt ttatcattta attcttttaa ttatatttcc 480
aaatggaccc atagtctaaa aaatatagaa ttaaaatgag attaattttt attttaataa 540aaatggaccc atagtctaaa aaatatagaa ttaaaatgag attaattttt attttaataa 540
aataaaaact gatgttcaaa tcaatttctc caaatactca tgataagtca aattgaatag 600aataaaaact gatgttcaaa tcaatttctc caaatactca tgataagtca aattgaatag 600
ttagatagat ggatgtatag aaataacact aatcttaata tatgaataat aattaattta 660ttagatagat ggatgtatag aaataacact aatcttaata tatgaataat aattaattta 660
ttaaagaata aaatttaaaa gaaactatct actataaaga ttagtgtgaa tatcatgaaa 720ttaaagaata aaatttaaaa gaaactatct actataaaga ttagtgtgaa tatcatgaaa 720
tggcaaatgt tgttgcacga gcgatcaatg attatctaga ttaattatat aaaataaaaa 780tggcaaatgt tgttgcacga gcgatcaatg attatctaga ttaattatat aaaataaaaa 780
atataattat taaaataaat caaagaaata aaagtggagc ccaccacaac gtacagacgt 840atataattat taaaataaat caaagaaata aaagtggagc ccaccacaac gtacagacgt 840
ccagttggta tgcaaggggc ggttctgagg atcaagtcac cgtcgggcgt caacagacta 900ccagttggta tgcaaggggc ggttctgagg atcaagtcac cgtcgggcgt caacagacta 900
tcctgacaca tacgagccta cgtggaaatc taatccgacg cccgcaattt cctagaaaaa 960tcctgacaca tacgagccta cgtggaaatc taatccgacg cccgcaattt cctagaaaaa 960
acaccggtcc aacgttttcc aacacgagcc ctctcttttt ccgccacgtg cgcctccatc 1020acaccggtcc aacgttttcc aacacgagcc ctctcttttt ccgccacgtg cgcctccatc 1020
caaaacttgt gacctaagca gtgacgaaaa ctgcccagcc aagtggcgca gcatcgacac 1080caaaacttgt gacctaagca gtgacgaaaa ctgcccagcc aagtggcgca gcatcgacac 1080
gtgtacgaat gcggtcaact tgtcttcatg gatccaaagc cgattgacgg tccccacgcg 1140gtgtacgaat gcggtcaact tgtcttcatg gatccaaagc cgattgacgg tccccacgcg 1140
tgtatttcta gagaaacctc gagccgactt agacacgtgt cgcgaatcca ccttggctcc 1200tgtatttcta gagaaacctc gagccgactt agacacgtgt cgcgaatcca ccttggctcc 1200
cctctataaa ggccgaggtt tctctcgatt tccgagtttc aactttcaac cgccgaattc 1260cctctataaa ggccgaggtt tctctcgatt tccgagtttc aactttcaac cgccgaattc 1260
agttctccag atccgttttg cagtggcaga ctcacatagc agattataga agaaagaaga 1320agttctccag atccgttttg cagtggcaga ctcacatagc agattataga agaaagaaga 1320
agaagaagat gagttgtaat ttgcagctgc ctcctggttt tagatttcac ccaacagatg 1380agaagaagat gagttgtaat ttgcagctgc ctcctggttt tagatttcac ccaacagatg 1380
aggaattggt actgcactat ttatgcaaga aatgcgcctc acaaccgatt gctgttc 1437aggaattggt actgcactat ttatgcaaga aatgcgcctc acaaccgatt gctgttc 1437
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