CN116942815A - The use of proton pump inhibitors in tumor immunotherapy - Google Patents
The use of proton pump inhibitors in tumor immunotherapy Download PDFInfo
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Abstract
Description
技术领域Technical field
本发明属于医药技术领域,具体而言,涉及质子泵抑制剂在肿瘤免疫治疗中的用途。The present invention belongs to the field of medical technology, and specifically relates to the use of proton pump inhibitors in tumor immunotherapy.
背景技术Background technique
质子泵抑制剂(proton pump inhibitors,PPIs)包括奥美拉唑(Omeprazole)、兰索拉唑(Lansoprazole)、泮托拉唑(Pantoprazole)、雷贝拉唑(Rabeprazole)等,由于其显著的抗酸性和良好的安全性,在临床上被广泛用于胃酸相关疾病治疗[1,2]。PPIs作为一种弱碱性化合物,在碱性环境中不易解离,为非活性状态,可通过细胞膜进入壁细胞分泌管内,遇到pH小于2的酸性环境后,PPIs可转化成次磺酸和次黄酰胺类化合物,与H+/K+-ATP酶中半胱氨酸残基上的巯基发生共价反应,形成二硫键,使H+/K+-ATP酶失活,从而抑制胃酸的分泌。Proton pump inhibitors (PPIs) include Omeprazole, Lansoprazole, Pantoprazole, Rabeprazole, etc., due to their significant anti- Acidic and good in safety, it is widely used in clinical treatment of gastric acid-related diseases [1,2] . As a weakly alkaline compound, PPIs are not easily dissociated in an alkaline environment and are in an inactive state. They can enter the secretory ducts of parietal cells through the cell membrane. When encountering an acidic environment with a pH of less than 2, PPIs can be converted into sulfenic acid and Hypoxanthine amide compounds covalently react with the sulfhydryl group on the cysteine residue in H + /K + -ATPase to form a disulfide bond, inactivating H + /K + -ATPase, thereby inhibiting gastric acid of secretion.
ADP核糖基化因子1(ARF1),作为小G蛋白的一种,在真核细胞中广泛分布,参与包括物质运输在内的许多细胞内生理过程[3]。作为细胞信号转导中重要的分子开关,ARF1在非活性的GDP结合形式和活性的GTP结合形式之间循环,这种循环过程受两种调节因子的调控,分别是鸟苷酸交换因子(guanine nucleotide exchange factors,GEFs)和GTP酶激活蛋白(GTPase activating proteins,GAPs),GEFs促进小G蛋白释放GDP,结合GTP,向下游效应蛋白转导信号,是一种正调节因子;GAPs能够增强小G蛋白的GTPase活性,促使其水解GTP而失活,是负调节因子[4-6]。ADP ribosylation factor 1 (ARF1), as a type of small G protein, is widely distributed in eukaryotic cells and participates in many intracellular physiological processes including material transport [3] . As an important molecular switch in cell signal transduction, ARF1 cycles between the inactive GDP-bound form and the active GTP-bound form. This cycle process is regulated by two regulatory factors, namely guanylate exchange factor (guanine). nucleotide exchange factors (GEFs) and GTPase activating proteins (GAPs). GEFs promote the release of GDP from small G proteins, bind GTP, and transduce signals to downstream effector proteins. They are a positive regulatory factor; GAPs can enhance small G The GTPase activity of the protein promotes its hydrolysis of GTP and inactivation, and is a negative regulatory factor [4-6] .
近年来,大量研究表明,ARF1的高度表达和异常激活参与肿瘤的发生发展过程,如增殖、侵袭和迁移等[7-10]。最近有研究揭示了ARF1与肿瘤干细胞生存的关系[11,12]。肿瘤干细胞是肿瘤中处于干细胞状态并具有干细胞特征的细胞亚群,肿瘤干细胞可能导致治疗耐药性、肿瘤转移、肿瘤免疫逃逸、疾病复发,并最终导致患者死亡。肿瘤干细胞研究的最终目标是找到能够选择性调控该类细胞的通路,然后靶向这些通路来杀死该类细胞。研究指出,肿瘤干细胞在代谢上是独特的,其脂质代谢过程需要ARF1的调控;在小鼠中敲除ARF1会导致脂质代谢受阻,脂滴积累,进一步导致代谢应激,包括线粒体缺陷和内质网应激,这种代谢应激能够选择性杀死肿瘤干细胞,濒临死亡的肿瘤干细胞能够释放病原相关分子模式,激活树突状细胞,树突状细胞的激活进一步增强T细胞的浸润和活化,从而刺激抗肿瘤免疫[12]。ARF1通路的敲低具有多重功能,不仅能够杀死肿瘤干细胞,还能激活肿瘤特异性的免疫应答,破坏实体瘤,获得持久的治疗效果[12]。因此,ARF1抑制剂的开发对于多种癌症治疗具有重大科学意义和广阔应用前景。In recent years, a large number of studies have shown that the high expression and abnormal activation of ARF1 are involved in the occurrence and development of tumors, such as proliferation, invasion and migration [7-10] . Recent studies have revealed the relationship between ARF1 and the survival of cancer stem cells [11,12] . Cancer stem cells are a subset of cells in tumors that are in a stem cell state and have stem cell characteristics. Cancer stem cells may lead to treatment resistance, tumor metastasis, tumor immune evasion, disease recurrence, and ultimately lead to patient death. The ultimate goal of cancer stem cell research is to find pathways that can selectively regulate this type of cells, and then target these pathways to kill this type of cells. Studies have pointed out that cancer stem cells are metabolically unique and their lipid metabolism process requires the regulation of ARF1; knocking out ARF1 in mice will lead to blocked lipid metabolism and accumulation of lipid droplets, further leading to metabolic stress, including mitochondrial defects and Endoplasmic reticulum stress, this metabolic stress can selectively kill cancer stem cells. Dying cancer stem cells can release pathogen-related molecular patterns and activate dendritic cells. The activation of dendritic cells further enhances the infiltration of T cells and Activation, thereby stimulating anti-tumor immunity [12] . Knockdown of the ARF1 pathway has multiple functions. It can not only kill cancer stem cells, but also activate tumor-specific immune responses, destroy solid tumors, and obtain lasting therapeutic effects [12] . Therefore, the development of ARF1 inhibitors has great scientific significance and broad application prospects for the treatment of various cancers.
由于小G蛋白表面相对平滑,除了鸟苷酸结合口袋外,缺乏稳定的和易于小分子结合的口袋[5,6],且小G蛋白对鸟苷酸有皮摩尔级的亲和力,这些都限制了直接靶向小G蛋白的抑制剂的发展[13]。尽管如此,近些年来,研究者们仍旧在寻找ARF1抑制剂方面做出了很多努力。已报道的ARF1抑制剂有BFA[14]、LM11[15]、SecinH3[16]、Golgicide A[17]、AMF-26[18]等,多数是通过干扰GEF的正常功能或者是破坏ARF1与GEF的相互作用来发挥抑制ARF1活性的效果,它们的发现对于研究ARF1的功能是有意义的,但是,到目前为止,这些抑制剂的作用模式较为单一,相关的活性研究还不够全面,它们的临床效果和安全性有待进一步研究。因此,开发安全且有效的ARF1抑制剂对于多种癌症治疗具有重大科学意义和广阔应用前景。Since the surface of the small G protein is relatively smooth, except for the guanylate binding pocket, it lacks stable and easy-to-bind pockets for small molecules [5,6] , and the small G protein has a picomolar affinity for guanylate, which are all limitations. led to the development of inhibitors that directly target small G proteins [13] . Despite this, researchers have made a lot of efforts in finding ARF1 inhibitors in recent years. Reported ARF1 inhibitors include BFA [14] , LM11 [15] , SecinH3 [16] , Golgicide A [17] , AMF-26 [18] , etc. Most of them interfere with the normal function of GEF or destroy ARF1 and GEF. interactions to exert the effect of inhibiting ARF1 activity. Their discovery is meaningful for studying the function of ARF1. However, so far, the mode of action of these inhibitors is relatively single, and the relevant activity research is not comprehensive enough. Their clinical The effectiveness and safety require further study. Therefore, the development of safe and effective ARF1 inhibitors has great scientific significance and broad application prospects for the treatment of various cancers.
发明内容Contents of the invention
本发明人发现了质子泵抑制剂(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑,PPIs)能够与ARF1的C159共价结合;体内外研究共同表明,雷贝拉唑能够显著抑制ARF1的活性水平,通过调节调节肿瘤干细胞脂解通路发挥抗肿瘤免疫功效。基于此,完成了本发明。The inventor found that proton pump inhibitors (rabeprazole, lansoprazole, omeprazole, pantoprazole, PPIs) can covalently bind to C159 of ARF1; in vitro and in vivo studies have shown that rabeprazole Azoles can significantly inhibit the activity level of ARF1 and exert anti-tumor immune effects by regulating the lipolysis pathway of cancer stem cells. Based on this, the present invention was completed.
因此,一方面,本发明提供了质子泵抑制剂在制备ARF1抑制剂中的用途。Therefore, in one aspect, the present invention provides the use of a proton pump inhibitor in the preparation of an ARF1 inhibitor.
本发明中,所述质子泵抑制剂是指通过抑制胃壁细胞的H+/K+-ATP酶(质子泵)来抑制胃酸分泌的药物,其实例包括但不限于,雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑,等等。In the present invention, the proton pump inhibitor refers to a drug that inhibits gastric acid secretion by inhibiting the H + /K + -ATPase (proton pump) of gastric parietal cells. Examples include, but are not limited to, rabeprazole, lanso. Prazole, omeprazole, pantoprazole, etc.
在一个实施方式中,所述质子泵抑制剂可以是选自雷贝拉唑、兰索拉唑、奥美拉唑和泮托拉唑的一种或多种。在一个优选实施方式中,所述质子泵抑制剂可以是雷贝拉唑。In one embodiment, the proton pump inhibitor may be one or more selected from the group consisting of rabeprazole, lansoprazole, omeprazole and pantoprazole. In a preferred embodiment, the proton pump inhibitor may be rabeprazole.
另一方面,本发明提供了质子泵抑制剂在制备治疗肿瘤的药物中的用途。In another aspect, the present invention provides the use of proton pump inhibitors in the preparation of medicaments for treating tumors.
本发明中,所述肿瘤是指含有肿瘤干细胞的肿瘤。In the present invention, the tumor refers to a tumor containing cancer stem cells.
在一个实施方式中,所述肿瘤可以选自含有肿瘤干细胞的肿瘤,如白血病、乳腺癌、结肠癌等。In one embodiment, the tumor may be selected from tumors containing cancer stem cells, such as leukemia, breast cancer, colon cancer, etc.
在一个实施方式中,所述肿瘤可以是结肠癌。In one embodiment, the tumor may be colon cancer.
在一个实施方式中,所述质子泵抑制剂可以是选自雷贝拉唑、兰索拉唑、奥美拉唑和泮托拉唑的一种或多种。在一个优选实施方式中,所述质子泵抑制剂可以是雷贝拉唑。In one embodiment, the proton pump inhibitor may be one or more selected from the group consisting of rabeprazole, lansoprazole, omeprazole and pantoprazole. In a preferred embodiment, the proton pump inhibitor may be rabeprazole.
在所述用途中,所述质子泵抑制剂作为ARF1抑制剂。In such uses, the proton pump inhibitor acts as an ARF1 inhibitor.
在一个实施方式中,所述质子泵抑制剂能够显著降低结肠癌细胞中ARF1的活性水平,且明显诱导脂滴积累。In one embodiment, the proton pump inhibitor can significantly reduce the activity level of ARF1 in colon cancer cells and significantly induce lipid droplet accumulation.
在一个实施方式中,所述质子泵抑制剂能够显著抑制肿瘤生长。In one embodiment, the proton pump inhibitor is capable of significantly inhibiting tumor growth.
在一个实施方式中,所述质子泵抑制剂能够显著增强肿瘤组织免疫细胞的浸润,增加了杀伤性T细胞数量,减少了耗竭性T细胞数量。In one embodiment, the proton pump inhibitor can significantly enhance the infiltration of immune cells in tumor tissue, increase the number of killer T cells, and reduce the number of exhausted T cells.
本发明首先通过蛋白热迁移实验发现PPIs能以浓度依赖的方式显著降低ARF1蛋白的热稳定性;由于PPIs与H+/K+-ATPase的共价结合特性,ARF1唯一的半胱氨酸C159被用于结合位点验证,野生型ARF1和点突变ARF1(C159)的蛋白热迁移实验和一级质谱实验、二级质谱实验共同证明了PPIs与ARF1发生了共价结合,并确证结合位点为C159。雷贝拉唑对ARF1热稳定性影响最大,被用于后续活性研究。The present invention first discovered through protein thermal migration experiments that PPIs can significantly reduce the thermal stability of ARF1 protein in a concentration-dependent manner; due to the covalent binding properties of PPIs and H + /K + -ATPase, the only cysteine C159 of ARF1 is For binding site verification, protein thermal migration experiments, primary mass spectrometry experiments, and secondary mass spectrometry experiments of wild-type ARF1 and point mutant ARF1 (C159) jointly proved that PPIs covalently bind to ARF1, and confirmed that the binding site is C159. Rabeprazole has the greatest impact on the thermal stability of ARF1 and is used in subsequent activity studies.
接着,体外鸟苷酸交换实验发现雷贝拉唑对ARF1鸟苷酸交换过程的显著抑制作用。细胞水平研究发现,雷贝拉唑能够显著降低CT26结肠癌细胞中ARF1的活性水平,且明显诱导脂滴积累。动物水平研究发现,雷贝拉唑能显著抑制CT26移植瘤的生长,对肿瘤组织的免疫细胞亚群进行流式分析后,发现雷贝拉唑有显著的免疫激活功效,表现为CD3+CD8+T细胞的显著上调,以及CD3+CD8+PD1+T细胞、CD3+CD8+TIM3+T细胞、CD3+CD8+PD1+TIM3+T细胞的显著下调,与免疫组织化学染色的结果一致。Next, in vitro guanylate exchange experiments found that rabeprazole significantly inhibited the guanylate exchange process of ARF1. Cell-level studies have found that rabeprazole can significantly reduce the activity level of ARF1 in CT26 colon cancer cells and significantly induce the accumulation of lipid droplets. Animal-level studies have found that rabeprazole can significantly inhibit the growth of CT26 transplanted tumors. After flow cytometry analysis of immune cell subpopulations in tumor tissues, it was found that rabeprazole has a significant immune activation effect, manifested as CD3 + CD8 + The significant up-regulation of T cells and the significant down-regulation of CD3 + CD8 + PD1 + T cells, CD3 + CD8 + TIM3 + T cells, and CD3 + CD8 + PD1 + TIM3 + T cells were consistent with the results of immunohistochemical staining.
本发明具有以下有益效果:The invention has the following beneficial effects:
1.本发明发现了质子泵抑制剂(PPIs)能够与ARF1的C159共价结合;1. The present invention found that proton pump inhibitors (PPIs) can covalently bind to C159 of ARF1;
2.本发明发现了雷贝拉唑能够显著抑制ARF1活性,通过调节肿瘤干细胞脂解通路发挥抗肿瘤免疫功效,为抗肿瘤免疫提供了新的治疗手段。2. The present invention found that rabeprazole can significantly inhibit ARF1 activity and exert anti-tumor immunity effects by regulating the lipolysis pathway of cancer stem cells, providing a new treatment method for anti-tumor immunity.
附图说明Description of the drawings
图1为显示实施例1中PPIs(雷贝拉唑(a)、兰索拉唑(b)、奥美拉唑(c)、泮托拉唑(d))在蛋白热迁移实验中显著降低ARF1的热稳定性的图。Figure 1 shows that the PPIs (rabeprazole (a), lansoprazole (b), omeprazole (c), pantoprazole (d)) in Example 1 were significantly reduced in the protein thermal migration experiment. Plot of thermal stability of ARF1.
图2显示实施例2中加入DTT后的PTS实验和ARF1C159A突变体的PTS实验(雷贝拉唑(a)、兰索拉唑(b)、奥美拉唑(c)、泮托拉唑(d))结果及PPIs的蛋白热迁移实验结果汇总(e)。Figure 2 shows the PTS experiment after adding DTT in Example 2 and the PTS experiment of the ARF1 C159A mutant (rabeprazole (a), lansoprazole (b), omeprazole (c), pantoprazole (d)) Results and summary of protein thermal migration experiment results of PPIs (e).
图3显示实施例3中Q-TOF质谱测定PPIs与ARF1WT(a)或ARF1/ARF1C159A(b)预孵育对ARF1蛋白分子量的影响。Figure 3 shows the effect of pre-incubation of PPIs with ARF1 WT (a) or ARF1/ARF1 C159A (b) on the molecular weight of ARF1 protein measured by Q-TOF mass spectrometry in Example 3.
图4显示实施例4中Q-Exactive质谱结果(雷贝拉唑(a)、兰索拉唑(b)、奥美拉唑(c)、泮托拉唑(d)),其显示PPIs修饰后的ARF1肽段。Figure 4 shows the Q-Exactive mass spectrometry results (rabeprazole (a), lansoprazole (b), omeprazole (c), pantoprazole (d)) in Example 4, which shows PPIs modification The latter ARF1 peptide.
图5显示实施例5中雷贝拉唑对ARF1鸟苷酸交换过程的抑制作用。Figure 5 shows the inhibitory effect of rabeprazole on the ARF1 guanylate exchange process in Example 5.
图6显示实施例6中雷贝拉唑的细胞水平活性验证结果。(a)雷贝拉唑能显著降低CT26结肠癌细胞中ARF1的活性水平,其中n.s.代表无显著差异,**代表P<0.01,***代表P<0.001;(b)雷贝拉唑能显著诱导CT26结肠癌细胞中脂滴积累。Figure 6 shows the cell level activity verification results of rabeprazole in Example 6. (a) Rabeprazole can significantly reduce the activity level of ARF1 in CT26 colon cancer cells, where n.s. represents no significant difference, ** represents P<0.01, *** represents P<0.001; (b) Rabeprazole can Significantly induces lipid droplet accumulation in CT26 colon cancer cells.
图7显示实施例7中雷贝拉唑对CT26小鼠移植瘤生长的抑制作用,其中***代表P<0.001。Figure 7 shows the inhibitory effect of rabeprazole on the growth of transplanted tumors in CT26 mice in Example 7, where *** represents P<0.001.
图8显示实施例8中流式细胞术(a)及免疫组化染色(b)分析雷贝拉唑对CT26小鼠移植瘤组织中免疫细胞亚群的影响,其中*代表P<0.05,**代表P<0.01,***代表P<0.001。Figure 8 shows the flow cytometry (a) and immunohistochemical staining (b) analysis of the effect of rabeprazole on immune cell subpopulations in CT26 mouse transplanted tumor tissue in Example 8, where * represents P<0.05, ** represents P<0.01, *** represents P<0.001.
具体实施方式Detailed ways
下述实施例所使用的实验方法如无特殊说明,均为常规方法。The experimental methods used in the following examples are all conventional methods unless otherwise specified.
下述实施例所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The materials, reagents, etc. used in the following examples can all be obtained from commercial sources unless otherwise specified.
材料与试剂Materials and reagents
主要试剂:NaCl(SCRC,10019318),Tris-HCl(美仑生物,MB6025),无水MgCl2(Ourchem,7786-30-3),SYPRO Orange染料(Sigma,S5692),DMSO(Sigma,D8418-1L),ARF1G-LISA Activation Assay Kit(Cytoskeleton,BK132),PBS(美仑生物,MA0015),免疫染色固定液(Beyotime,P0098),免疫染色通透液(Triton X-100)(Beyotime,P0096),尼罗红(MedChemExpress,HY-D0718),抗荧光淬灭封片液(含DAPI)(Beyotime,P0131),红细胞裂解液(Beyotime,C3702),Fixable Viablity Stain 700染料(BD Horizan,564997),anti-mouse CD16/32antibody(Invitrogen,14-0161-82),anti-CD3 antibody(Invitrogen,11-0032-82),anti-CD8 antibody(Biolegend,100738),anti-PD1 antibody(Biolegend,135219),anti-TIM3 antibody(Invitrogen,12-5870-82)。Main reagents: NaCl (SCRC, 10019318), Tris-HCl (Meilun Biotech, MB6025), anhydrous MgCl 2 (Ourchem, 7786-30-3), SYPRO Orange dye (Sigma, S5692), DMSO (Sigma, D8418- 1L), ARF1G-LISA Activation Assay Kit (Cytoskeleton, BK132), PBS (Meilun Biotech, MA0015), immunostaining fixative (Beyotime, P0098), immunostaining permeabilization solution (Triton X-100) (Beyotime, P0096) , Nile red (MedChemExpress, HY-D0718), anti-fluorescence quenching mounting solution (containing DAPI) (Beyotime, P0131), red blood cell lysis solution (Beyotime, C3702), Fixable Viablity Stain 700 dye (BD Horizan, 564997), anti-mouse CD16/32antibody (Invitrogen, 14-0161-82), anti-CD3 antibody (Invitrogen, 11-0032-82), anti-CD8 antibody (Biolegend, 100738), anti-PD1 antibody (Biolegend, 135219), anti-TIM3 antibody (Invitrogen, 12-5870-82).
主要材料:化合物购自MedChemExpress公司(雷贝拉唑,HY-B0656;兰索拉唑,HY-13662;奥美拉唑,HY-B0113;泮托拉唑,HY-17507),DTT(MedChemExpress,HY-15917),GDP(MedChemExpress,HY-113066A),MANT-GTP(Invitrogen,M12415),0.1mL 96孔无裙边PCR管(矮管)(DN Biotech,5371012),热封膜(Thermo Scientific,AB-1107),384孔黑板(Corning,3575),Lab-Tek 8孔板(Thermo,154534)。Main materials: Compounds were purchased from MedChemExpress (rabeprazole, HY-B0656; lansoprazole, HY-13662; omeprazole, HY-B0113; pantoprazole, HY-17507), DTT (MedChemExpress, HY-15917), GDP (MedChemExpress, HY-113066A), MANT-GTP (Invitrogen, M12415), 0.1mL 96-well skirtless PCR tube (low-profile tube) (DN Biotech, 5371012), heat-sealing membrane (Thermo Scientific, AB-1107), 384-well black plate (Corning, 3575), Lab-Tek 8-well plate (Thermo, 154534).
仪器instrument
实时荧光定量PCR仪(Bio-Rad),nLC-1000-Q-Exactive(ThermoFisher),Spark多功能酶标仪(Tecan),OLYMPUS IX73荧光显微镜,Bio-Rad ZE5流式分析仪。Real-time fluorescence quantitative PCR instrument (Bio-Rad), nLC-1000-Q-Exactive (ThermoFisher), Spark multifunctional microplate reader (Tecan), OLYMPUS IX73 fluorescence microscope, Bio-Rad ZE5 flow cytometer.
实施例1 PPIs在蛋白热迁移实验中对ARF1的热稳定性的影响Example 1 Effect of PPIs on the thermal stability of ARF1 in protein thermal migration experiments
实验方法:experimental method:
采用蛋白热迁移实验评价化合物对蛋白热稳定的影响,其中使用野生型的重组人源Δ17ARF1蛋白(缺失前17个氨基酸的可溶性截短体形式,ARF1WT)。反应体系20μL,在白色96孔板中加入2.5μM ARF1蛋白,5×SYPRO Orange(Sigma,S5692)以及不同浓度(50μM(20×)、12.5μM(5×))待测化合物(PPIs:雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑),并贴上Absolute qPCR Plate Seals热封膜密封样品孔,使用实时荧光定量PCR仪器(Bio-Rad)采集温度从25℃升到95℃的实时荧光信号。实验结束后,用CFX Connect Evaluation System分析拟合Tm值。导出的数据用Graphpad Prism 8.0重新组图。Protein thermal migration experiments were used to evaluate the effects of compounds on protein thermal stability, in which wild-type recombinant human Δ17ARF1 protein (a soluble truncated form lacking the first 17 amino acids, ARF1 WT ) was used. The reaction system is 20 μL. In the white 96-well plate, add 2.5 μM ARF1 protein, 5×SYPRO Orange (Sigma, S5692) and different concentrations (50 μM (20×), 12.5 μM (5×)) of the test compound (PPIs: Rebbe prazole, lansoprazole, omeprazole, pantoprazole), and affix Absolute qPCR Plate Seals heat-sealing film to seal the sample well, and use a real-time fluorescence quantitative PCR instrument (Bio-Rad) to collect the temperature rising from 25°C Real-time fluorescence signal to 95°C. After the experiment, the CFX Connect Evaluation System was used to analyze the fitted T m value. The exported data were reorganized into graphs using Graphpad Prism 8.0.
实验结果:Experimental results:
如图1a-d所示,雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑均能显著降低ARF1蛋白的热稳定性。As shown in Figure 1a-d, rabeprazole, lansoprazole, omeprazole, and pantoprazole can significantly reduce the thermal stability of ARF1 protein.
实施例2加入DTT后的PTS实验和ARF1C159A突变体的PTS实验。Example 2 PTS experiment after adding DTT and PTS experiment of ARF1 C159A mutant.
实验方法:采用蛋白热迁移实验评价DTT(一种能够破坏二硫键的还原剂)是否会对PTS实验结果造成影响,方法同实施例1,向反应体系中加入1mM DTT;采用蛋白热迁移实验评价PPIs对ARF1C159A突变蛋白的热稳定性的影响,方法同实施例1,将野生型ARF1蛋白替换为ARF1C159A蛋白。Experimental method: Use a protein thermal migration experiment to evaluate whether DTT (a reducing agent that can destroy disulfide bonds) will affect the PTS experimental results. The method is the same as in Example 1. Add 1mM DTT to the reaction system; use a protein thermal migration experiment. To evaluate the effect of PPIs on the thermal stability of the ARF1 C159A mutant protein, the method was the same as in Example 1, except that the wild-type ARF1 protein was replaced by the ARF1 C159A protein.
实验结果:如图2所示,加入DTT后/替换为ARF1C159A蛋白,PPIs(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑)对ARF1的热稳定性影响均消失,提示PPIs与ARF1的159位半胱氨酸可能发生了共价结合。Experimental results: As shown in Figure 2, after adding DTT/replacing it with ARF1 C159A protein, the effects of PPIs (rabeprazole, lansoprazole, omeprazole, pantoprazole) on the thermal stability of ARF1 disappeared. , suggesting that PPIs may be covalently bound to cysteine 159 of ARF1.
实施例3 Q-TOF质谱测定PPIs与ARF1/ARF1C159A预孵育前后ARF1蛋白分子量。Example 3 Q-TOF mass spectrometry measured the molecular weight of ARF1 protein before and after preincubation of PPIs and ARF1/ARF1 C159A .
实验方法:experimental method:
该实验用于检测蛋白质分子量,分为对照组和化合物组,化合物组孵育体系为:20mM Tris(pH 8.0),100mM NaCl,5mM MgCl2,100μM ARF1WT/ARF1C159A蛋白,1mM化合物(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑)。对照组加入等比例DMSO。将对照组和化合物组放置于4℃冰箱中孵育过夜,然后送中国科学院上海药物研究所质谱检测服务平台进行蛋白分子量测定。This experiment is used to detect protein molecular weight and is divided into a control group and a compound group. The incubation system of the compound group is: 20mM Tris (pH 8.0), 100mM NaCl, 5mM MgCl 2 , 100μM ARF1 WT /ARF1 C159A protein, 1mM compound (Rebella azole, lansoprazole, omeprazole, pantoprazole). DMSO was added in equal proportions to the control group. The control group and compound group were placed in a 4°C refrigerator and incubated overnight, and then sent to the mass spectrometry detection service platform of the Shanghai Institute of Materia Medica, Chinese Academy of Sciences for protein molecular weight determination.
实验结果:Experimental results:
如图3a-b所示,PPIs(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑)与ARF1WT预孵育后,ARF1分子量的增加值提示PPIs同半胱氨酸发生了共价反应。PPIs与ARF1C159A预孵育后,ARF1分子量无变化,确证了共价结合位点在C159。As shown in Figure 3a-b, after pre-incubation of PPIs (rabeprazole, lansoprazole, omeprazole, pantoprazole) with ARF1 WT , the increase in ARF1 molecular weight suggests that PPIs generate homocysteine. covalent reaction. After pre-incubation of PPIs and ARF1 C159A , the molecular weight of ARF1 did not change, confirming that the covalent binding site is at C159.
实施例4 Q-Exactive二级质谱结果显示PPIs修饰后的ARF1肽段。Example 4 Q-Exactive secondary mass spectrometry results show the ARF1 peptide modified by PPIs.
实验方法:样品孵育体系为:20mM Tris(pH 8.0),100mM NaCl,5mM MgCl2,100μMARF1WT蛋白,1mM化合物(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑),制备好后于4℃孵育过夜。检测过程如下:样品加入100μL 100mM NH4HCO3,Trypsin(10ng/μL)37℃酶解反应17小时。第二天,样品12000×g离心30分钟,取上清冻干、脱盐、再冻干得肽段冻干粉。之后加入15μL 0.1%FA(甲酸)溶液溶解肽段冻干粉,12000×g离心5分钟,取上清加入上样瓶中,质谱(Q-Exactive)检测,MaxQuant(1.6.5.0)搜库检索,控制蛋白质鉴定假阳性率小于1%。Experimental method: The sample incubation system is: 20mM Tris (pH 8.0), 100mM NaCl, 5mM MgCl 2 , 100μMARF1 WT protein, 1mM compound (rabeprazole, lansoprazole, omeprazole, pantoprazole), After preparation, incubate overnight at 4°C. The detection process is as follows: 100μL of 100mM NH 4 HCO 3 is added to the sample, and Trypsin (10ng/μL) is enzymatically digested at 37°C for 17 hours. The next day, the sample was centrifuged at 12,000 × g for 30 minutes, and the supernatant was freeze-dried, desalted, and then freeze-dried to obtain peptide lyophilized powder. Then add 15 μL of 0.1% FA (formic acid) solution to dissolve the peptide freeze-dried powder, centrifuge at 12000×g for 5 minutes, add the supernatant to the loading bottle, detect with mass spectrometry (Q-Exactive), and search the database with MaxQuant (1.6.5.0) , control the false positive rate of protein identification to less than 1%.
实验结果:如图4所示,二级质谱结果进一步证实PPIs(雷贝拉唑、兰索拉唑、奥美拉唑、泮托拉唑)共价修饰ARF1的C159。Experimental results: As shown in Figure 4, the secondary mass spectrometry results further confirmed that PPIs (rabeprazole, lansoprazole, omeprazole, pantoprazole) covalently modified C159 of ARF1.
实施例5雷贝拉唑对ARF1鸟苷酸交换过程的影响Example 5 Effect of rabeprazole on the guanylate exchange process of ARF1
实验方法:将ARF1蛋白预先标记GDP,得到ARF1GDP,实验缓冲体系为20mM HEPES pH7.5,150mM NaCl,1mM MgCl2,1mM DTT,ARF1GDP、MANT-GTP、ARNOSec7的终浓度分别为20μM、10μM、1μM,首先用384孔黑板将ARF1GDP、MANT-GTP、不同浓度的化合物混匀后,室温避光孵育15分钟,然后加入ARNOSec7启动交换反应,使用Spark多功能酶标仪(Tecan)持续监测荧光信号,直至达到平台期。导出的数据用Graphpad Prism 8.0重新作图。Experimental method: The ARF1 protein is pre-labeled with GDP to obtain ARF1 GDP . The experimental buffer system is 20mM HEPES pH7.5, 150mM NaCl, 1mM MgCl 2 , 1mM DTT. The final concentrations of ARF1 GDP , MANT-GTP, and ARNO Sec7 are 20 μM and 10μM, 1μM, first use a 384-well black plate to mix ARF1 GDP , MANT-GTP, and compounds of different concentrations, incubate at room temperature in the dark for 15 minutes, then add ARNO Sec7 to start the exchange reaction, and use Spark multifunctional microplate reader (Tecan) The fluorescence signal was continuously monitored until a plateau was reached. The exported data were re-plotted using Graphpad Prism 8.0.
实验结果:如图5所示,雷贝拉唑对ARF1鸟苷酸交换过程有显著抑制作用,且呈浓度依赖性。Experimental results: As shown in Figure 5, rabeprazole has a significant inhibitory effect on the ARF1 guanylate exchange process in a concentration-dependent manner.
实施例6雷贝拉唑的细胞水平活性验证Example 6 Cell-level activity verification of rabeprazole
实验方法:experimental method:
GLISA实验:使用Cytoskeleton ARF1 G-LISA Activation Assay Kit(BK132)测定CT26细胞中ARF1活性水平,按照说明书方法进行。GLISA experiment: Use Cytoskeleton ARF1 G-LISA Activation Assay Kit (BK132) to measure the ARF1 activity level in CT26 cells, and proceed according to the instructions.
脂滴染色实验:Lipid droplet staining experiment:
当CT26细胞生长状态良好时,提前一天晚上将其接种于Thermo Lab-Tek 8孔板中,每孔2×104个细胞,待次日细胞贴壁后,加入化合物或DMSO处理。处理结束后,染色步骤如下:When CT26 cells are growing well, they are seeded into a Thermo Lab-Tek 8-well plate one night in advance at 2×10 4 cells per well. After the cells adhere to the wall the next day, compounds or DMSO are added for treatment. After processing, the staining steps are as follows:
(1)去掉培养基后,用PBS冲洗3次,每孔200μL,每次5分钟;(1) After removing the culture medium, rinse 3 times with PBS, 200 μL per well, 5 minutes each time;
(2)用免疫染色固定液固定30分钟;(2) Fix with immunostaining fixative for 30 minutes;
(3)PBS洗3次,每孔200μL,每次5分钟;(3) Wash 3 times with PBS, 200 μL per well, 5 minutes each time;
(4)用免疫染色通透液(Triton X-100)对细胞进行透化处理30分钟;(4) Permeabilize cells with immunostaining permeabilization solution (Triton X-100) for 30 minutes;
(5)PBS洗3次,每孔200μL,每次5分钟;(5) Wash 3 times with PBS, 200 μL per well, 5 minutes each time;
(6)吸去PBS,避光配制尼罗红染色液(2μM),每孔加入200μL染色液,避光孵育20分钟;孵育过程种清洗盖玻片(75%酒精杀菌后,用ddH2O清洗三次)。(6) Aspirate the PBS and prepare Nile red staining solution (2 μM) in the dark. Add 200 μL staining solution to each well and incubate in the dark for 20 minutes. During the incubation process, clean the coverslip (after 75% alcohol sterilization, use ddH 2 O Clean three times).
(7)避光条件下,PBS洗3次,每孔200μL,每次5分钟;(7) Under dark conditions, wash 3 times with PBS, 200 μL per well, 5 minutes each time;
(8)用抗荧光淬灭封片液进行封片,取适量封片液滴加到8孔板上,然后将盖玻片缓缓倒扣上去,不要产生气泡,用指甲油在盖玻片边缘涂一圈,风干后置于4℃冰箱中保存,当天用OLYMPUS IX73荧光显微镜完成拍片。(8) Use anti-fluorescence quenching sealing solution to seal the slide. Add an appropriate amount of sealing solution to the 8-well plate, then slowly flip the coverslip up without generating air bubbles. Use nail polish to cover the coverslips. Apply a circle around the edge, air-dry and store in a 4°C refrigerator. Filming will be completed on the same day using an OLYMPUS IX73 fluorescence microscope.
实验结果:如图6a所示,雷贝拉唑能显著降低CT26结肠癌细胞中ARF1的活性水平;如图6b所示,雷贝拉唑能显著诱导CT26结肠癌细胞中脂滴积累。Experimental results: As shown in Figure 6a, rabeprazole can significantly reduce the activity level of ARF1 in CT26 colon cancer cells; as shown in Figure 6b, rabeprazole can significantly induce the accumulation of lipid droplets in CT26 colon cancer cells.
实施例7雷贝拉唑对CT26小鼠移植瘤生长的影响Example 7 Effect of rabeprazole on the growth of transplanted tumors in CT26 mice
实验方法:所有动物实验均经过中国科学院上海药物研究所实验动物管理委员会的审核和批准,按照规定的指导方针进行(IACUC Issue NO.2021-03-JHL-22)。实验对象为6~8周龄雌性Balb/c鼠。通过皮下注射CT26结肠癌细胞(每只2.5×105个细胞)建立结肠癌移植瘤模型。当肿瘤长到体积约100mm3时,将小鼠随机分为对照组和给药组,给小鼠腹腔注射溶剂空白或化合物(40mg/kg/天)。实验结束后,取小鼠的肿瘤组织并进行分析。Experimental methods: All animal experiments were reviewed and approved by the Experimental Animal Management Committee of Shanghai Institute of Materia Medica, Chinese Academy of Sciences, and were conducted in accordance with the prescribed guidelines (IACUC Issue NO.2021-03-JHL-22). The experimental subjects were female Balb/c rats aged 6 to 8 weeks. Colon cancer xenograft tumor model was established by subcutaneous injection of CT26 colon cancer cells (2.5×10 5 cells each). When the tumor grew to a volume of approximately 100 mm, the mice were randomly divided into a control group and a drug administration group, and the mice were intraperitoneally injected with solvent blank or compound (40 mg/kg/day). After the experiment, tumor tissue from the mice was removed and analyzed.
实验结果:如图7所示,雷贝拉唑对CT26小鼠移植瘤生长有显著抑制作用。Experimental results: As shown in Figure 7, rabeprazole has a significant inhibitory effect on the growth of transplanted tumors in CT26 mice.
实施例8流式细胞术及免疫组化染色分析雷贝拉唑对CT26小鼠移植瘤组织中免疫细胞亚群的影响Example 8 Flow cytometry and immunohistochemical staining analysis of the effect of rabeprazole on immune cell subsets in transplanted tumor tissue of CT26 mice
1、流式细胞术实验方法:1. Flow cytometry experimental method:
(1)肿瘤组织的单细胞悬液制备(1) Preparation of single cell suspension of tumor tissue
提前配制消化液:向100mL RPMI1640中加入0.1%胶原酶、0.001%透明质酸酶、0.002%DNA酶,由于DNA酶是Ca2+/Mg2+依赖的酶,消化液中还需加入12μL 1M CaCl2和12μL1MMgCl2。Prepare the digestion solution in advance: add 0.1% collagenase, 0.001% hyaluronidase, and 0.002% DNase to 100mL RPMI1640. Since DNase is a Ca 2+ /Mg 2+ -dependent enzyme, 12 μL 1M needs to be added to the digestion solution. CaCl 2 and 12 μL 1MMgCl 2 .
肿瘤组织消化:小鼠安乐死后,剥离肿瘤组织,取靠近外缘没有糜烂的部分约500mg于EP管中,加入300μL消化液,用剪刀剪碎成肉糜。再补充1mL消化液,置于37℃,180rpm摇床中消化60分钟。Digestion of tumor tissue: After the mice are euthanized, peel off the tumor tissue, take about 500 mg of the non-eroded part near the outer edge and put it into an EP tube, add 300 μL of digestive juice, and cut into minced meat with scissors. Add 1 mL of digestion solution and digest in a shaking shaker at 37°C and 180 rpm for 60 minutes.
过滤:提前在15mL离心管中加入5mL PBS,用200目纱布将消化好的肿瘤组织过滤至离心管中,得到的滤液为单细胞悬液,然后将其离心(1000rpm,3分钟),去除上清。Filtration: Add 5 mL of PBS to a 15 mL centrifuge tube in advance, and filter the digested tumor tissue into the centrifuge tube with 200 mesh gauze. The resulting filtrate is a single-cell suspension. Then centrifuge it (1000 rpm, 3 minutes) and remove the supernatant. clear.
裂解红细胞:加入500μL氯化铵红细胞裂解液将细胞重悬,1分钟后,加入3mL的PBS终止裂解。离心,去除上清。Lyse red blood cells: Add 500 μL of ammonium chloride red blood cell lysis buffer to resuspend the cells. After 1 minute, add 3 mL of PBS to stop lysis. Centrifuge and remove supernatant.
过滤:提前准备好EP管,向上一步的离心管中加入1mL PBS重悬,用200目纱布将其过滤至EP管中,离心,去除上清。加入PBS重悬,即得到肿瘤组织的单细胞悬液。Filtration: Prepare the EP tube in advance, add 1mL PBS to the centrifuge tube from the previous step and resuspend it, filter it into the EP tube with 200 mesh gauze, centrifuge, and remove the supernatant. Add PBS and resuspend to obtain a single cell suspension of tumor tissue.
(2)细胞表面标志物染色(2) Cell surface marker staining
死活染色:取适量肿瘤组织的单细胞悬液于EP管中,用Fixable Viablity Stain700染料(BD Horizan,564997)区分死、活细胞,冰上染色10分钟。同时取一个EP管加入200μL细胞样品,只染死活。染色结束后,用含有2%FBS的PBS终止。Dead and alive staining: Take an appropriate amount of single cell suspension of tumor tissue in an EP tube, use Fixable Viablity Stain700 dye (BD Horizon, 564997) to distinguish dead and living cells, and stain on ice for 10 minutes. At the same time, take an EP tube and add 200 μL of cell sample to stain only live and dead cells. After staining, stop with PBS containing 2% FBS.
封闭Fc受体:该步骤在2%FBS的PBS溶液中进行。使用anti-mouse CD16/32antibody封闭细胞表面的Fc受体,冰上孵育10分钟。Blocking Fc receptors: This step is performed in 2% FBS in PBS. Use anti-mouse CD16/32antibody to block Fc receptors on the cell surface and incubate on ice for 10 minutes.
染色:封闭结束后直接加入流式抗体Mix孵育,将位于细胞表面的CD3、CD8、PD-1、TIM3抗原分子一起染色。染色结束后,离心,用400μL 2%FBS的PBS重悬细胞,即可上机检测。Staining: After blocking, directly add flow antibody Mix and incubate to stain CD3, CD8, PD-1, and TIM3 antigen molecules located on the cell surface together. After staining, centrifuge and resuspend the cells in 400 μL of 2% FBS in PBS before testing on the machine.
2、免疫组化染色:分离的新鲜的CT26肿瘤组织送武汉塞维尔生物科技有限公司进行石蜡切片和免疫组化染色操作。2. Immunohistochemical staining: The isolated fresh CT26 tumor tissue was sent to Wuhan Sevier Biotechnology Co., Ltd. for paraffin sectioning and immunohistochemical staining.
实验结果:如图8(上)所示,流式分析显示,雷贝拉唑能够显著增强小鼠肿瘤组织免疫细胞的浸润,增加了杀伤性T细胞数量,减少了耗竭性T细胞数量。表现为CD3+CD8+T细胞的显著上调,以及CD3+CD8+PD1+T细胞、CD3+CD8+TIM3+T细胞、CD3+CD8+PD1+TIM3+T细胞的显著下调。如图8(下)所示,CD8、PD1的免疫组化染色结果与流式结果一致。Experimental results: As shown in Figure 8 (top), flow cytometry analysis showed that rabeprazole can significantly enhance the infiltration of immune cells in mouse tumor tissues, increase the number of killer T cells, and reduce the number of exhausting T cells. It showed a significant up-regulation of CD3 + CD8 + T cells, and a significant down-regulation of CD3 + CD8 + PD1 + T cells, CD3 + CD8 + TIM3 + T cells, and CD3 + CD8 + PD1 + TIM3 + T cells. As shown in Figure 8 (bottom), the immunohistochemical staining results of CD8 and PD1 were consistent with the flow cytometry results.
本发明发现PPIs能够与ARF1共价结合,其中雷贝拉唑能够显著抑制ARF1活性,通过调节CT26结肠癌细胞脂解通路发挥抗肿瘤免疫功效,为抗肿瘤免疫提供了新的治疗手段。The present invention found that PPIs can covalently bind to ARF1, among which rabeprazole can significantly inhibit the activity of ARF1, exert anti-tumor immunity effects by regulating the lipolysis pathway of CT26 colon cancer cells, and provide a new treatment method for anti-tumor immunity.
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| WO2009110862A1 (en) * | 2008-03-04 | 2009-09-11 | Bio-Quant, Inc. | Methods to inhibit tumor cell growth by using proton pump inhibitors |
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| CN110746381A (en) * | 2019-11-16 | 2020-02-04 | 中山万汉制药有限公司 | Co-crystal composed of orlistat and proton pump inhibitor, composition and use thereof |
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| WO2009110862A1 (en) * | 2008-03-04 | 2009-09-11 | Bio-Quant, Inc. | Methods to inhibit tumor cell growth by using proton pump inhibitors |
| CN104546845A (en) * | 2015-02-09 | 2015-04-29 | 南京格耀生物科技有限公司 | Application of rabeprazole sodium in preparation of medicines for inhibiting tumor cell metastasis and spread |
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