CN116894812A - Individualized disease prediction methods, devices, media and equipment based on sequence learning - Google Patents
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Abstract
Description
技术领域Technical field
本发明属于人工智能医学应用技术领域,尤其涉及一种基于序列学习的个体化疾病预测方法、装置、介质、电子设备。The invention belongs to the field of artificial intelligence medical application technology, and in particular relates to an individualized disease prediction method, device, medium and electronic equipment based on sequence learning.
背景技术Background technique
阿尔兹海默症是一种严重的老年痴呆性疾病,近年来高发病率使得患病人数迅速增加。患者们的生活质量显著下降。虽然投入高昂的医疗与社会成本,但治疗手段有限。缺乏有效的早期诊断。所以早期筛查与诊断在大多数患者有明显症状前就检测出来抓住最佳有效治疗时间,对患者进行早发现、早治疗显得尤为重要。Alzheimer's disease is a serious Alzheimer's disease. In recent years, the high incidence rate has caused a rapid increase in the number of patients. The quality of life of patients decreased significantly. Despite high medical and social costs, treatment options are limited. Effective early diagnosis is lacking. Therefore, early screening and diagnosis can detect most patients before they have obvious symptoms and seize the best and effective treatment time. Early detection and early treatment of patients are particularly important.
本发明考虑融合多项技术对对阿尔兹海默症进行早筛与预测。This invention considers integrating multiple technologies for early screening and prediction of Alzheimer's disease.
发明内容Contents of the invention
针对现有技术的不足,本发明提出一种基于序列学习的个体化疾病预测方法、装置、介质、电子设备,能够对疾病进行早期的预测,提高了疾病预测精度。In view of the shortcomings of the existing technology, the present invention proposes an individualized disease prediction method, device, medium, and electronic equipment based on sequence learning, which can predict diseases early and improve the accuracy of disease prediction.
为了实现上述目的,本发明一方面提供一种基于序列学习的个体化疾病预测方法,用于阿尔兹海默症预测,包括:In order to achieve the above objectives, on one hand, the present invention provides an individualized disease prediction method based on sequence learning for Alzheimer's disease prediction, including:
获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集;Obtain brain CT examination pictures of Alzheimer's disease patients at different disease stages and construct a data set;
对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域;Label the data set to identify ventricular regions and white matter regions surrounding the brain;
对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;Mark the features of the ventricular region image, calculate ventricular enlargement features, and form first feature data;
对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据;Mark the image of the brain white matter region with features, calculate the white matter atrophy features, and form second feature data;
计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据;Calculate the percentage of the first ventricular enlargement characteristic and/or the white matter atrophy characteristic area in the entire brain area, and construct third characteristic data;
将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。The first feature data, the second feature data, and the third feature data are input into a preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the prediction model of Alzheimer's disease. .
可选的,对所述数据集进行标记之前还包括:Optionally, before labeling the data set, it also includes:
对所述数据集图像进行预处理,Preprocess the data set images,
对预处理后的所述数据集进行组织类型的分割。The preprocessed data set is segmented into tissue types.
可选的,对所述脑室区域图像进行特征标记,统计出脑室扩大特征,Optionally, mark the ventricular region images with features to calculate ventricular enlargement features,
利用标准脑模型将不同个体的所述脑室区域图像进行标准化处理,测量脑室体积、脑回体积或病灶体积,识别所述脑室扩大特征。A standard brain model is used to standardize the images of the ventricular region of different individuals, measure the ventricular volume, gyrus volume or lesion volume, and identify the ventricular enlargement characteristics.
可选的,对所述数据集进行标记还包括:Optionally, labeling the data set also includes:
对同一患者不同时间点获得的脑CT检测图配准;和/或Registration of brain CT scans obtained at different time points for the same patient; and/or
将脑CT检测图与其他影像技术获取的图像进行配准与融合。Register and fuse brain CT detection images with images obtained by other imaging technologies.
可选的,采用新型生物标志物的方法对所述数据集进行标记,包括:Optionally, use new biomarker methods to mark the data set, including:
通过对阿尔兹海默症疾病患者和正常人的基因组、转录组与蛋白质组数据进行生物信息学分析,找到与阿尔兹海默症疾病相关的关键基因、信使RNA与蛋白质。Through bioinformatics analysis of the genome, transcriptome and proteome data of Alzheimer's disease patients and normal people, we can find key genes, messenger RNA and proteins related to Alzheimer's disease.
可选的,所述LSTM模型包括:输入层、隐藏层以及输出层;Optionally, the LSTM model includes: input layer, hidden layer and output layer;
所述第一特征数据、第二特征数据、以及第三特征数据作为所述输入层的输入,所述输入层的输出作为所述隐藏层的输入,所述隐藏层的输出作为所述输出层的输入,所述输出层输出阿尔兹海默症预测结果;The first feature data, the second feature data, and the third feature data serve as the input of the input layer, the output of the input layer serves as the input of the hidden layer, and the output of the hidden layer serves as the output layer As input, the output layer outputs Alzheimer's disease prediction results;
所述隐藏层包括:The hidden layer includes:
一记忆单元,a memory unit,
一输入门模块,连接所述记忆单元输入端,控制所述第一特征数据、第二特征数据、以及第三特征数据的流入所述记忆单元;An input gate module is connected to the input end of the memory unit and controls the flow of the first characteristic data, the second characteristic data, and the third characteristic data into the memory unit;
一遗忘模块,连接所述记忆单元,控制上一时刻记忆单元中的信息是否积累到当前时刻记忆单元中,A forgetting module, connected to the memory unit, controls whether the information in the memory unit at the previous moment is accumulated into the memory unit at the current moment,
所述输入门模块的输出信息与所述遗忘模块的输出信息结合,生成所述记忆单元;The output information of the input gate module is combined with the output information of the forgetting module to generate the memory unit;
一输出门模块,连接所述记忆单元输出端,控制当前时刻记忆单元中的信息流入下一隐藏层或所述输出层。An output gate module is connected to the output end of the memory unit and controls the information in the memory unit at the current moment to flow into the next hidden layer or the output layer.
可选的,训练过程中的损失函数采用均方误差损失函数,梯度下降算法采用Adam梯度下降算法。Optionally, the loss function during the training process uses the mean square error loss function, and the gradient descent algorithm uses the Adam gradient descent algorithm.
本发明另一方面还提供了一种基于序列学习的个体化疾病预测装置,采用上述的基于序列学习的个体化疾病预测方法,至少包括:On the other hand, the present invention also provides an individualized disease prediction device based on sequence learning, which adopts the above individualized disease prediction method based on sequence learning and at least includes:
数据集构建模块,用于获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集;The data set construction module is used to obtain brain CT examination pictures of Alzheimer's disease patients at different disease stages and construct a data set;
特征标记模块,用于对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域;及A feature labeling module for labeling the data set and identifying the ventricular region and the white matter region surrounding the brain; and
对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;Mark the features of the ventricular region image, calculate ventricular enlargement features, and form first feature data;
对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据;Mark the image of the brain white matter region with features, calculate the white matter atrophy features, and form second feature data;
计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据;Calculate the percentage of the first ventricular enlargement characteristic and/or the white matter atrophy characteristic area in the entire brain area, and construct third characteristic data;
模型构建模块,用于将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。A model building module for inputting the first feature data, the second feature data, and the third feature data into a preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the Alzheimer's disease Predictive models for Alzheimer's disease.
本发明另一方面还提供了一种存储介质,用于存储一种用于执行权上述的基于序列学习的个体化疾病预测方法的计算机程序。Another aspect of the present invention also provides a storage medium for storing a computer program for executing the above-mentioned personalized disease prediction method based on sequence learning.
本发明另一方面还提供了一种电子设备,包括存储器、处理器以及存储在所述存储器上并可在所述处理器上运行的计算机程序,所述处理器执行所述计算机程序时实现上述的基于序列学习的个体化疾病预测方法。Another aspect of the present invention also provides an electronic device, which includes a memory, a processor, and a computer program stored on the memory and executable on the processor. When the processor executes the computer program, the above is achieved. An individualized disease prediction method based on sequence learning.
由以上方案可知,本发明的优点在于:It can be seen from the above solutions that the advantages of the present invention are:
本发明提供的基于序列学习的个体化疾病预测方法,其通过获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集;然后对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域;进而对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据;并同时计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据;将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。该方法采用融合深度卷积和RNN循环神经网络的LSTM模型进行训练,构建阿尔兹海默症的预测模型,以解决阿尔兹海默症早期发现不明显的问题,实现早期的预测,提高了预测精度。The invention provides an individualized disease prediction method based on sequence learning, which constructs a data set by acquiring brain CT detection maps of Alzheimer's disease patients at different disease stages; and then marks the data set to identify the ventricular region, and the brain white matter area around the brain; then feature marking is performed on the image of the cerebral ventricle area, and the characteristics of ventricular enlargement are statistically calculated to form the first characteristic data; the image of the cerebral white matter area is characterized and marked, and the characteristics of white matter atrophy are statistically calculated to form the third characteristic data. two characteristic data; and simultaneously calculate the percentage of the first ventricular enlargement characteristic and/or the white matter atrophy characteristic area in the entire brain area to construct a third characteristic data; combine the first characteristic data and the second characteristic data The data, and the third feature data are input to a preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the prediction model of Alzheimer's disease. This method uses an LSTM model that combines deep convolution and RNN recurrent neural network for training to build a prediction model for Alzheimer's disease to solve the problem of unclear early detection of Alzheimer's disease, achieve early prediction, and improve prediction Accuracy.
附图说明Description of the drawings
图1为本发明实施例提供的基于序列学习的个体化疾病预测方法的流程示意图;Figure 1 is a schematic flow chart of an individualized disease prediction method based on sequence learning provided by an embodiment of the present invention;
图2为LSTM模型结构图;Figure 2 is the structure diagram of the LSTM model;
图3为LSTM模型的误差率结果;Figure 3 shows the error rate results of the LSTM model;
图4为模型预测图;Figure 4 is the model prediction chart;
图5为本发明的基于序列学习的个体化疾病预测装置的框架图;Figure 5 is a framework diagram of the sequence learning-based individualized disease prediction device of the present invention;
图6为电子设备的结构示意图;Figure 6 is a schematic structural diagram of the electronic device;
其中:in:
11-输入层11-Input layer
12-隐藏层12-hidden layer
121-记忆单元121-Memory unit
122-输入门模块122-Input gate module
123-遗忘模块123-Forgetting module
124-输出门模块124-Output gate module
13-输出层13-Output layer
300-基于序列学习的个体化疾病预测装置300-Personalized disease prediction device based on sequence learning
301-数据集构建模块301-Dataset Building Blocks
302-特征标记模块302-Feature Marking Module
303-模型构建模块303-Model Building Blocks
400-电子设备400-Electronic equipment
401-处理器401-processor
402-存储器。402-memory.
具体实施方式Detailed ways
为让本发明的上述特征和效果能阐述的更明确易懂,下文特举实施例,并配合说明书附图作详细说明如下。In order to make the above-mentioned features and effects of the present invention more clear and understandable, examples are given below and are described in detail with reference to the accompanying drawings.
RNN(循环神经网络)是LSTM(长短期记忆网络)的前身,但相比LSTM具有无法很好学习长期依赖关系、梯度消失问题、训练不稳定、性能较弱、应用范围窄、难以解释等缺点RNN的两个主要限制是梯度消失与难以学习长期依赖关系。这使其表现力较弱,难以处理较长序列数据,应用也较为局限。而LSTM则在很大程度上克服这两个问题,其性能更强,应用范围更广,已逐步取代RNN成为序列学习的主流模型。LSTM正在逐步超越RNN,成为序列学习领域的主流工具。本发明基于融合深度卷积和RNN循环神经网络的LSTM模型,提供了一种基于序列学习的个体化疾病预测方法,对阿尔兹海默症预测进行早期预测,针对阿尔兹海默症早期发现不明显的问题,提高了预测的精度,有助于早期阿尔兹海默症患者进行适当医学干预,延缓发病,降低了阿尔兹海默症的投入成本。RNN (Recurrent Neural Network) is the predecessor of LSTM (Long Short-Term Memory Network), but compared with LSTM, it has shortcomings such as inability to learn long-term dependencies well, vanishing gradient problem, unstable training, weak performance, narrow application range, and difficulty in interpretation. Two major limitations of RNNs are vanishing gradients and difficulty in learning long-term dependencies. This makes it less expressive, difficult to process longer sequence data, and its application is also more limited. LSTM has overcome these two problems to a large extent, has stronger performance and wider application range, and has gradually replaced RNN as the mainstream model for sequence learning. LSTM is gradually surpassing RNN and becoming the mainstream tool in the field of sequence learning. The present invention is based on the LSTM model that combines deep convolution and RNN recurrent neural network, and provides an individualized disease prediction method based on sequence learning, which enables early prediction of Alzheimer's disease and aims at solving the problem of early detection of Alzheimer's disease. The obvious problem improves the accuracy of prediction, helps patients with early Alzheimer's disease to carry out appropriate medical intervention, delays the onset of disease, and reduces the investment cost of Alzheimer's disease.
图1示出了本发明实施例提供的基于序列学习的个体化疾病预测方法的流程示意图。Figure 1 shows a schematic flowchart of an individualized disease prediction method based on sequence learning provided by an embodiment of the present invention.
一种基于序列学习的个体化疾病预测方法,用于阿尔兹海默症预测,包括:An individualized disease prediction method based on sequence learning for Alzheimer's disease prediction, including:
S1、获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集。S1. Obtain brain CT examination pictures of Alzheimer's disease patients at different disease stages and construct a data set.
实际中,阿尔兹海默症根据症状严重程度可分为四个阶段:正常、轻度、中度和重度。各疾病阶段具有以下主要特征:1.正常阶段:无明显记忆力或认知能力下降,日常生活自理能力保持正常。2.轻度阿尔兹海默症:开始出现一定程度的记忆力下降,尤其是近期记忆,但对生活影响还不大。日常生活自理能力基本保持,但复杂任务处理能力略有下降。3.中度阿尔兹海默症:记忆力、语言表达能力和判断力等下降加剧,需要一定帮助才能完成日常活动。病人可能开始重复询问同样的问题,或难以理解复杂的概念。部分生活自理能力下降。4.重度阿尔兹海默症:认知功能严重损害,几乎丧失生活自理能力。无法处理日常生活最基本的活动,需要全天候的护理照料。大部分人会丧失语言表达能力,并且难以认出亲朋。以上不同阶段的主要特征如下:(1)记忆力下降:从轻度开始下降,到重度几乎完全丧失。(2)生活自理能力:从轻度基本保持,到重度几乎完全丧失。(3)语言与表达:从轻度开始略有下降,到重度丧失大部分语言能力。(4)判断与思维:从轻度开始下降,到重度丧失大部分判断与理解能力。(5)行为与情绪:从中度开始出现改变,到重度完全依赖他人照料。各阶段之间表现在认知功能损害程度和生活自理能力下降方面存在较大差异,为临床诊断和治疗提供参考。In practice, Alzheimer's disease can be divided into four stages based on the severity of symptoms: normal, mild, moderate and severe. Each disease stage has the following main characteristics: 1. Normal stage: There is no obvious decline in memory or cognitive ability, and self-care ability in daily life remains normal. 2. Mild Alzheimer's disease: A certain degree of memory decline begins to occur, especially recent memory, but the impact on life is not significant. The self-care ability in daily life is basically maintained, but the ability to handle complex tasks is slightly reduced. 3. Moderate Alzheimer's disease: The decline in memory, language expression ability and judgment is intensified, and certain help is needed to complete daily activities. The patient may start asking the same questions repeatedly or have trouble understanding complex concepts. Partial self-care ability is reduced. 4. Severe Alzheimer's disease: Cognitive function is severely damaged, and the ability to take care of oneself is almost lost. Unable to handle the most basic activities of daily living and requiring round-the-clock nursing care. Most people will lose the ability to express language and have difficulty recognizing relatives and friends. The main characteristics of the above different stages are as follows: (1) Memory decline: starting from mild to severe to almost complete loss. (2) Ability to take care of oneself: from mild to basically maintained, to severe to almost complete loss. (3) Language and expression: From mild to slight decline, to severe loss of most language abilities. (4) Judgment and thinking: From mild to severe, most of the judgment and understanding abilities are lost. (5) Behavior and emotions: changes from moderate to severe to complete dependence on others for care. There are large differences in the degree of cognitive function damage and decline in self-care ability between each stage, which provides reference for clinical diagnosis and treatment.
因此,在具体实现中,为保证数据的完整性,本实施例可以分别采集正常、轻度、中度和重度不同阶段患者的脑CT检测图,以构建训练数据集。Therefore, in a specific implementation, in order to ensure the integrity of the data, this embodiment can collect brain CT detection images of patients at different stages of normal, mild, moderate and severe to construct a training data set.
S2、对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域。S2. Mark the data set and identify the ventricular area and the white matter area around the brain.
阿尔兹海默症患病的其中一个重要特征是脑室扩大和大脑周围的白质萎缩,因此具体实现中,可以通过具体识别脑室区域以及大脑白质区域的特征,作为模型训练特征,以进行疾病预测。One of the important characteristics of Alzheimer's disease is ventricular enlargement and white matter atrophy around the brain. Therefore, in specific implementation, the characteristics of the ventricular region and the white matter region of the brain can be specifically identified as model training features for disease prediction.
此外,本实施例具体可以采用新型生物标志物的方法对所述数据集进行标记,通过对阿尔兹海默症疾病患者和正常人的基因组、转录组与蛋白质组数据进行生物信息学分析,找到与阿尔兹海默症疾病相关的关键基因、信使RNA与蛋白质,进而识别出脑室区域、以及大脑周围的大脑白质区域。通过新型生物标志物方法对大规模的多组学数据进行交叉分析,找出潜在的生物标志物分子,特别适用于整合基因组、转录组、蛋白质组与代谢组数据,发现更具有临床意义的生物标志物。进而结合患者的多组学数据与临床信息,利用生物信息学方法可以建立脑室相关疾病的预测模型,可以用于评估疾病发生或进展的概率,提供个性化的预后判断,有利于疾病的精准诊治。In addition, in this embodiment, a new biomarker method can be used to mark the data set, and through bioinformatics analysis of the genome, transcriptome and proteome data of Alzheimer's disease patients and normal people, it is found that Key genes, messenger RNAs, and proteins associated with Alzheimer's disease were identified to identify the ventricular regions and white matter regions surrounding the brain. The new biomarker method is used to cross-analyze large-scale multi-omics data to find potential biomarker molecules. It is especially suitable for integrating genome, transcriptome, proteome and metabolome data to discover organisms with more clinical significance. landmark. Combining the patient's multi-omics data and clinical information, bioinformatics methods can be used to establish a prediction model for ventricular-related diseases, which can be used to evaluate the probability of disease occurrence or progression, provide personalized prognosis, and facilitate accurate diagnosis and treatment of the disease. .
此外,对所述数据集进行标记之前还需要对所述数据集图像进行预处理、图像分割、像素分类、以及图像配准与融合等。预处理包括CT图像的平滑、滤波、补充缺失区域等操作,以消除噪声、增强图像质量与连续性,为后续分析与处理预备数据;图像分割需要对预处理后的所述数据集进行组织类型的分割,如gray matter、white matter与cerebrospinal fluid的分割,以便于特征的提取,图像分割为定量分析与计算机辅助诊断提供重要依据。像素分类基于图像特征将每个像素分配到特定类别的过程,它利用机器学习等方法,可以实现gray matter、white matter与pathological tissue的分类与识别。图像配准与融合包括对同一患者不同时间点获得的脑CT检测图配准;和/或将脑CT检测图与其他影像技术获取的图像进行配准与融合的过程,图像配准增进了图像间的信息,有利于病变的检测与跟踪。In addition, before labeling the data set, it is necessary to preprocess the data set images, image segmentation, pixel classification, image registration and fusion, etc. Preprocessing includes operations such as smoothing, filtering, and supplementing missing areas of CT images to eliminate noise, enhance image quality and continuity, and prepare data for subsequent analysis and processing; image segmentation requires organizing the preprocessed data set. Segmentation, such as gray matter, white matter and cerebrospinal fluid segmentation, to facilitate feature extraction, image segmentation provides an important basis for quantitative analysis and computer-aided diagnosis. Pixel classification is the process of assigning each pixel to a specific category based on image features. It uses methods such as machine learning to achieve the classification and identification of gray matter, white matter and pathological tissue. Image registration and fusion includes the process of registering and fusing brain CT examination maps obtained at different time points of the same patient; and/or registering and fusion of brain CT examination maps with images obtained by other imaging technologies. Image registration enhances the image quality The information between them is conducive to the detection and tracking of lesions.
S3、对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;S3. Mark the features of the ventricular region image, calculate the features of ventricular enlargement, and form the first feature data;
对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据。Features are marked on the brain white matter region images, and white matter atrophy features are statistically calculated to form second feature data.
在具体实现中,通过上述步骤识别出脑室区域图像、以及大脑白质区域图像,进而对所述脑室区域图像进行特征标记,统计出脑室扩大特征,具体可以利用标准脑模型将不同个体的所述脑室区域图像进行标准化处理,测量脑室体积、脑回体积或病灶体积,以识别所述脑室扩大特征,构建第一特征数据集;以及对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,具体可以利用标准脑模型将不同个体的所述大脑白质区域图像进行标准化处理,测量白质体积,以识别所述白质萎缩特征,构建第二特征数据集。In a specific implementation, the ventricular region images and brain white matter region images are identified through the above steps, and then the ventricular region images are characterized, and the characteristics of ventricular enlargement are statistically calculated. Specifically, a standard brain model can be used to classify the ventricles of different individuals. Standardize the regional images to measure the ventricular volume, gyral volume or lesion volume to identify the ventricular enlargement characteristics and construct a first feature data set; and perform feature marking on the brain white matter regional images to calculate the white matter atrophy characteristics, Specifically, a standard brain model can be used to standardize the brain white matter region images of different individuals, and the white matter volume can be measured to identify the white matter atrophy characteristics and construct a second feature data set.
S4、计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据。S4. Calculate the percentage of the first ventricular enlargement feature and/or the white matter atrophy feature in the entire brain region, and construct third feature data.
本实施例中,在构建了关于脑室扩大特征的第一特征数据、以及关于白质萎缩特征的第二特征数据后,为进一步提高特征数据关联性,以提高模型识别精度,进一步确定出所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,作为第三特征数据。将第一特征数据、第二特征数据、以及第三特征数据结合,作为模型训练特征,输入至训练模型,以进行疾病预测。In this embodiment, after constructing the first characteristic data about the characteristics of ventricular enlargement and the second characteristic data about the characteristics of white matter atrophy, in order to further improve the correlation of the characteristic data and improve the model recognition accuracy, the third characteristic data is further determined. The percentage of an area with ventricular enlargement characteristics and/or white matter atrophy characteristics in the entire brain area is used as the third characteristic data. The first feature data, the second feature data, and the third feature data are combined as model training features and input into the training model for disease prediction.
S5、将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。S5. Input the first feature data, the second feature data, and the third feature data to the preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the Alzheimer's disease model. Predictive model.
长短期记忆网络LSTM是一种特殊的RNN(循环神经网络),能够学习长期依赖关系。LSTM通过“门”的结构学习选择性遗忘与记忆信息,能够建模长序列数据中遥远元素之间的依赖关系。这是传统RNN无法实现的,使其在时间序列预测等任务上表现优异。还能解决梯度消失问题。在长序列数据中,传统RNN的梯度容易在反向传播过程中“消失”,使其无法学习。LSTM通过门的结构选择重要信息,避免了这个问题,使其可以学习较长时间序列。此外,LSTM的训练过程相比其他RNN更加稳定,容易收敛,并且速度更快。这使其在实际应用中更易实现。性能更强。LSTM通过引入“门”机制解决了传统RNN在学习长序列依赖关系与梯度消失方面的问题,具有很强的表现力。它广泛应用于序列学习任务,并已取得较强的效果,是当前较为成熟和常用的序列学习模型之一。其结构也比较清晰,过程较易解释,这增强了其可靠性与可信度。The long short-term memory network LSTM is a special RNN (recurrent neural network) that can learn long-term dependencies. LSTM learns selective forgetting and memory information through the "gate" structure, and can model the dependencies between distant elements in long sequence data. This is something that traditional RNN cannot achieve, making it excellent in tasks such as time series prediction. It can also solve the vanishing gradient problem. In long sequence data, the gradient of traditional RNN is easy to "disappear" during the backpropagation process, making it impossible to learn. LSTM avoids this problem by selecting important information through the gate structure, allowing it to learn longer time series. In addition, the training process of LSTM is more stable, easy to converge, and faster than other RNNs. This makes it easier to implement in practical applications. Better performance. LSTM solves the problems of traditional RNN in learning long sequence dependencies and gradient disappearance by introducing the "gate" mechanism, and has strong expressive power. It is widely used in sequence learning tasks and has achieved strong results. It is currently one of the more mature and commonly used sequence learning models. Its structure is also relatively clear and the process is easier to explain, which enhances its reliability and credibility.
因此,本实施例为提高模型的预测精度,采用融合深度卷积和RNN循环神经网络的LSTM模型进行训练,构建阿尔兹海默症的预测模型,以解决阿尔兹海默症早期发现不明显的问题,实现早期的预测。Therefore, in this embodiment, in order to improve the prediction accuracy of the model, an LSTM model that combines deep convolution and RNN recurrent neural network is used for training, and a prediction model of Alzheimer's disease is constructed to solve the problem of unclear early detection of Alzheimer's disease. problem, achieving early predictions.
具体的,LSTM模型结构如图2中所示,其包括输入层11、隐藏层12以及输出层13,其中第一特征数据、第二特征数据、以及第三特征数据作为所述输入层的输入,所述输入层的输出作为所述隐藏层的输入,所述隐藏层的输出作为所述输出层的输入,所述输出层输出阿尔兹海默症预测结果。对于隐藏层12,其具体包括:Specifically, the LSTM model structure is shown in Figure 2, which includes an input layer 11, a hidden layer 12, and an output layer 13, in which the first feature data, the second feature data, and the third feature data are used as inputs to the input layer. , the output of the input layer is used as the input of the hidden layer, the output of the hidden layer is used as the input of the output layer, and the output layer outputs the Alzheimer's disease prediction result. For hidden layer 12, it specifically includes:
一记忆单元121,a memory unit 121,
一输入门模块122,连接所述记忆单元121输入端,控制所述第一特征数据、第二特征数据、以及第三特征数据的流入所述记忆单元;An input gate module 122 is connected to the input end of the memory unit 121 and controls the flow of the first characteristic data, the second characteristic data, and the third characteristic data into the memory unit;
一遗忘模块123,连接所述记忆单元121,控制上一时刻记忆单元中的信息是否积累到当前时刻记忆单元中,A forgetting module 123, connected to the memory unit 121, controls whether the information in the memory unit at the previous moment is accumulated into the memory unit at the current moment,
所述输入门模块的输出信息与所述遗忘模块的输出信息结合,生成所述记忆单元;The output information of the input gate module is combined with the output information of the forgetting module to generate the memory unit;
一输出门模块124,连接所述记忆单元121输出端,控制当前时刻记忆单元中的信息流入下一隐藏层12或所述输出层13。An output gate module 124 is connected to the output end of the memory unit 121 and controls the information in the memory unit at the current moment to flow into the next hidden layer 12 or the output layer 13 .
具体的,LSTM模型公式为:Specifically, the LSTM model formula is:
ft=sigmoid(Wf·[ht-1,xt]+bf)f t =sigmoid (W f ·[h t-1 , x t ]+b f )
it=sigmoid(Wi·[ht-1,xt]+bi)i t =sigmoid (W i ·[h t-1 , x t ]+b i )
ot=Sigmoid(Wo·[ht-1,xt]+bo)o t =Sigmoid (W o ·[h t-1 , x t ]+b o )
ht=ot×tanh(ct)h t =o t ×tanh(c t )
其中,ft、it和ot分别表示遗忘门(即遗忘模块),输入门(即输入模块)和输出门(即输出模块);xt表示输入序列,即第一特征数据、第二特征数据、以及第三特征数据;ht表示隐藏状态、c t、表示记忆单元;Wf、Wi、Wo表示门限的递归连接权重,bf、bi、bo表示偏置向量;tanh表示双曲正切激活函数。Among them, f t , i t and o t represent the forgetting gate (i.e. forgetting module), input gate (i.e. input module) and output gate (i.e. output module) respectively; x t represents the input sequence, i.e. the first feature data, the second Feature data, and the third feature data; h t represents the hidden state, c t , represents the memory unit; W f , Wi , and W o represent the recursive connection weights of the threshold, b f , bi , and bo represent the bias vector; tanh represents the hyperbolic tangent activation function.
此外,训练过程中的损失函数采用均方误差损失函数,梯度下降算法采用Adam梯度下降算法。In addition, the loss function during the training process uses the mean square error loss function, and the gradient descent algorithm uses the Adam gradient descent algorithm.
图3示出了该模型的误差率结果,可以看到,经过持续的训练,在大约20个周期后,数据的丢失和错误率已经下降到一个较低的水平,并且在以后的训练中,数据的丢失和错误率下降的速度也会变慢。最终误差也保持在较低的水平,保证了精度。Figure 3 shows the error rate results of the model. It can be seen that after continuous training, after about 20 cycles, the loss of data and the error rate have dropped to a lower level, and in subsequent training, Data loss and error rates also decrease more slowly. The final error is also kept at a low level, ensuring accuracy.
图4示出了模型预测后,得到预测图。从预测图中可以清楚地看到,在未来几年内,特别是在检测后的第二年,测试者患阿尔茨海默病的概率会非常高。因此,在此之前通过适当的医疗干预,阿尔茨海默病的发病率可以减少30%,延迟5年,减少50%。Figure 4 shows the prediction map obtained after model prediction. It is clear from the prediction graph that the probability of developing Alzheimer's disease in the next few years, especially in the second year after testing, will be very high. Therefore, with appropriate medical intervention before then, the incidence of Alzheimer's disease can be reduced by 30%, delayed by 5 years, and reduced by 50%.
综上所述,本发明提供的基于序列学习的个体化疾病预测方法,其通过获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集;然后对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域;进而对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据;并同时计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据;将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。该方法采用融合深度卷积和RNN循环神经网络的LSTM模型进行训练,构建阿尔兹海默症的预测模型,以解决阿尔兹海默症早期发现不明显的问题,实现早期的预测,提高了预测精度。In summary, the invention provides an individualized disease prediction method based on sequence learning, which constructs a data set by obtaining brain CT detection maps of Alzheimer's disease patients at different disease stages; and then marks the data set, Identify the ventricular area and the white matter area around the brain; then mark the image of the cerebral ventricular area with features, and count the characteristics of ventricular enlargement to form the first feature data; mark the image with features of the white matter area of the brain, and count the white matter atrophy characteristics to form second characteristic data; and simultaneously calculate the percentage of the first ventricular enlargement characteristic and/or the white matter atrophy characteristic area in the entire brain area to construct third characteristic data; and combine the first characteristic The data, the second feature data, and the third feature data are input to a preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the prediction model of Alzheimer's disease. This method uses an LSTM model that combines deep convolution and RNN recurrent neural network for training to build a prediction model for Alzheimer's disease to solve the problem of unclear early detection of Alzheimer's disease, achieve early prediction, and improve prediction Accuracy.
此外,本发明上述实施例可以应用于基于序列学习的个体化疾病预测方法功能的终端设备中,该终端设备可以包括个人终端、以及上位机终端等,本发明实施例对此不加以限制。该终端可以支持Windows、Android(安卓)、IOS、WindowsPhone等操作系统。In addition, the above embodiments of the present invention can be applied to terminal devices with the function of the personalized disease prediction method based on sequence learning. The terminal devices may include personal terminals, host computer terminals, etc., and the embodiments of the present invention are not limited thereto. The terminal can support Windows, Android (Android), IOS, Windows Phone and other operating systems.
参照图5,图5示出了一种基于序列学习的个体化疾病预测装置300,应用于基于序列学习的个体化疾病预测方法可应用于个人终端、以及上位机终端设备中,其可实现通过如图1所示的基于序列学习的个体化疾病预测方法,本申请实施例提供的基于序列学习的个体化疾病预测装置能够实现上述基于序列学习的个体化疾病预测方法实现的各个过程。Referring to Figure 5, Figure 5 shows an individualized disease prediction device 300 based on sequence learning. The personalized disease prediction method based on sequence learning can be applied to personal terminals and host computer terminal equipment, which can be implemented through As shown in Figure 1, the individualized disease prediction method based on sequence learning, the individualized disease prediction device based on sequence learning provided by the embodiment of the present application can realize each process of the above individualized disease prediction method based on sequence learning.
一种基于序列学习的个体化疾病预测装置300,采用上述的基于序列学习的个体化疾病预测方法,至少包括:An individualized disease prediction device 300 based on sequence learning, using the above-mentioned personalized disease prediction method based on sequence learning, at least includes:
数据集构建模块301,用于获取不同疾病阶段阿尔兹海默症患者的脑CT检测图,构建数据集;The data set construction module 301 is used to obtain brain CT detection maps of Alzheimer's disease patients at different disease stages and construct a data set;
特征标记模块302,用于对所述数据集进行标记,识别出脑室区域、以及大脑周围的大脑白质区域;及The feature labeling module 302 is used to label the data set and identify the ventricular area and the white matter area around the brain; and
对所述脑室区域图像进行特征标记,统计出脑室扩大特征,形成第一特征数据;Mark the features of the ventricular region image, calculate ventricular enlargement features, and form first feature data;
对所述大脑白质区域图像进行特征标记,统计出白质萎缩特征,形成第二特征数据;Mark the image of the brain white matter region with features, calculate the white matter atrophy features, and form second feature data;
计算所述第一脑室扩大特征、和/或所述白质萎缩特征的区域所占整个大脑区域的百分比,构建第三特征数据;Calculate the percentage of the first ventricular enlargement characteristic and/or the white matter atrophy characteristic area in the entire brain area, and construct third characteristic data;
模型构建模块303,用于将所述第一特征数据、第二特征数据、以及第三特征数据输入至预设的融合深度卷积和RNN循环神经网络的LSTM模型进行训练,以构建所述阿尔兹海默症的预测模型。The model building module 303 is used to input the first feature data, the second feature data, and the third feature data to a preset LSTM model that combines deep convolution and RNN recurrent neural network for training to build the Al Predictive models for Alzheimer's disease.
此外,应当理解,在根据本申请实施例的基于序列学习的个体化疾病预测装置300中,仅以上述各功能模块的划分进行举例说明,实际应用中,可以根据需要而将上述功能分配由不同的功能模块完成,即基于序列学习的个体化疾病预测装置300可划分为与上述例示出的模块不同的功能模块,以完成以上描述的全部或者部分功能。In addition, it should be understood that in the personalized disease prediction device 300 based on sequence learning according to the embodiment of the present application, only the division of the above-mentioned functional modules is used as an example. In actual applications, the above-mentioned function allocation can be divided into different groups according to needs. The functional modules are completed, that is, the personalized disease prediction device 300 based on sequence learning can be divided into functional modules different from the modules illustrated above to complete all or part of the functions described above.
图6是本申请实施例提供的电子设备的结构示意图。FIG. 6 is a schematic structural diagram of an electronic device provided by an embodiment of the present application.
此外,如图6中所示,本申请实施例还提供了一种电子设备400,包括处理器401,存储器402,存储在存储器402上并可在所述处理器401上运行的程序或指令,该程序或指令被处理器401执行时实现上述基于序列学习的个体化疾病预测方法的步骤,且能达到相同的技术效果。In addition, as shown in Figure 6, the embodiment of the present application also provides an electronic device 400, including a processor 401, a memory 402, and programs or instructions stored on the memory 402 and executable on the processor 401. When the program or instruction is executed by the processor 401, the steps of the above-mentioned personalized disease prediction method based on sequence learning are implemented, and the same technical effect can be achieved.
其中,所述处理器为上述实施例中所述的电子设备中的处理器。所述可读存储介质,包括计算机可读存储介质,如计算机只读存储器(Read-Only Memory,ROM)、随机存取存储器(Random Access Memory,RAM)、磁碟或者光盘等。Wherein, the processor is the processor in the electronic device described in the above embodiment. The readable storage medium includes computer readable storage media, such as computer read-only memory (Read-Only Memory, ROM), random access memory (Random Access Memory, RAM), magnetic disk or optical disk, etc.
此外,本申请实施例还提供一种可读存储介质,所述可读存储介质上存储有程序或指令,该程序或指令被处理器执行时实现上述基于序列学习的个体化疾病预测方法的步骤,且能达到相同的技术效果。In addition, embodiments of the present application also provide a readable storage medium on which a program or instructions are stored. When the program or instructions are executed by a processor, the steps of the above sequence learning-based personalized disease prediction method are implemented. , and can achieve the same technical effect.
需要说明的是,在本文中,术语“包括”、“包含”或者其任何其他变体意在涵盖非排他性的包含,从而使得包括一系列要素的过程、方法、物品或者装置不仅包括那些要素,而且还包括没有明确列出的其他要素,或者是还包括为这种过程、方法、物品或者装置所固有的要素。在没有更多限制的情况下,由语句“包括一个……”限定的要素,并不排除在包括该要素的过程、方法、物品或者装置中还存在另外的相同要素。此外,需要指出的是,本申请实施方式中的方法和装置的范围不限按示出或讨论的顺序来执行功能,还可包括根据所涉及的功能按基本同时的方式或按相反的顺序来执行功能,例如,可以按不同于所描述的次序来执行所描述的方法,并且还可以施加、省去、或组合各种步骤。另外,参照某些示例所描述的特征可在其他示例中被组合。It should be noted that, in this document, the terms "comprising", "comprises" or any other variations thereof are intended to cover a non-exclusive inclusion, such that a process, method, article or device that includes a series of elements not only includes those elements, It also includes other elements not expressly listed or inherent in the process, method, article or apparatus. Without further limitation, an element defined by the statement "comprises a..." does not exclude the presence of additional identical elements in a process, method, article or apparatus that includes that element. In addition, it should be pointed out that the scope of the methods and devices in the embodiments of the present application is not limited to performing functions in the order shown or discussed, but may also include performing functions in a substantially simultaneous manner or in reverse order according to the functions involved. Functions may be performed, for example, the methods described may be performed in an order different from that described, and various steps may also be applied, omitted, or combined. Additionally, features described with reference to certain examples may be combined in other examples.
通过以上的实施方式的描述,本领域的技术人员可以清楚地了解到上述实施例方法可借助软件加必需的通用硬件平台的方式来实现,当然也可以通过硬件,但很多情况下前者是更佳的实施方式。基于这样的理解,本申请的技术方案本质上或者说对现有技术做出贡献的部分可以以计算机软件产品的形式体现出来,该计算机软件产品存储在一个存储介质(如ROM/RAM、磁碟、光盘)中,包括若干指令用以使得一台终端(可以是手机,计算机,服务器,或者网络设备等)执行本申请各个实施例所述的方法。Through the above description of the embodiments, those skilled in the art can clearly understand that the methods of the above embodiments can be implemented by means of software plus the necessary general hardware platform. Of course, it can also be implemented by hardware, but in many cases the former is better. implementation. Based on this understanding, the technical solution of the present application can be embodied in the form of a computer software product that is essentially or contributes to the existing technology. The computer software product is stored in a storage medium (such as ROM/RAM, disk , optical disk), including several instructions to cause a terminal (which can be a mobile phone, computer, server, or network device, etc.) to execute the methods described in various embodiments of this application.
上面结合附图对本申请的实施例进行了描述,但是本申请并不局限于上述的具体实施方式,上述的具体实施方式仅仅是示意性的,而不是限制性的,本领域的普通技术人员在本申请的启示下,在不脱离本申请宗旨和权利要求所保护的范围情况下,还可做出很多形式,均属于本申请的保护之内。The embodiments of the present application have been described above in conjunction with the accompanying drawings. However, the present application is not limited to the above-mentioned specific implementations. The above-mentioned specific implementations are only illustrative and not restrictive. Those of ordinary skill in the art will Inspired by this application, many forms can be made without departing from the purpose of this application and the scope protected by the claims, all of which fall within the protection of this application.
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