CN115806907A - Preparation and application of a deep-sea streptomyces and its antifeedant and antifungal active substances - Google Patents
Preparation and application of a deep-sea streptomyces and its antifeedant and antifungal active substances Download PDFInfo
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Abstract
本发明涉及微生物农药技术领域,具体为一种具有拒食功能和抗菌作用的深海链霉菌及其应用。中国南海深海来源的链霉菌为Streptomyces sp.NA13,于2022年8月29日保藏于中国典型培养物保藏中心,保藏编号:CCTCC M 20221343。该菌种具有制备Antimycin、Candicidin、Naringenin、Surugamide、Fredericamycin、SAL‑2242、Albaflavenone、Hopene、SGR PTMs等抗生素的能力,特别是使用发酵制备抗霉素或环八肽surugamide类多种化合物,包括新颖的抗霉素类化合物antimycin Q(1)。制备的抗霉素类物质作为虫害拒食剂或抗真菌药物先导化合物,具有开发成天然来源的抗菌、抗虫农药等应用前景。
The invention relates to the technical field of microbial pesticides, in particular to a deep-sea streptomyces with antifeedant function and antibacterial effect and application thereof. The Streptomyces sp.NA13 derived from the deep sea in the South China Sea was deposited in the China Center for Type Culture Collection on August 29, 2022, with the preservation number: CCTCC M 20221343. The strain has the ability to prepare Antimycin, Candicidin, Naringenin, Surugamide, Fredericamycin, SAL-2242, Albaflavenone, Hopene, SGR PTMs and other antibiotics, especially the use of fermentation to prepare various compounds of antimycin or cyclic octapeptide surugamide, including novel The antimycin compound antimycin Q(1). The prepared antimycin substance is used as an antifeedant for insect pests or a lead compound of an antifungal drug, and has the application prospect of being developed into a natural source of antibacterial and anti-insect pesticides.
Description
技术领域technical field
本发明涉及微生物农药技术领域,具体为一种具有拒食功能和抗菌作用的深海链霉菌及其应用。The invention relates to the technical field of microbial pesticides, in particular to a deep-sea streptomyces with antifeeding function and antibacterial effect and application thereof.
背景技术Background technique
放线菌在自然界中分布十分广阔,它们能产生具有多种生物功能的代谢产物。值得注意的是,大约76%市售的抗生素原始分子结构骨架都来源于放线菌属,其中以开发程度较高的链霉菌属最为突出(Journal of Industrial Microbiology Biotechnology,2014,41(2):425-431)。2019年,据李德海教授团队报道链霉菌贡献了放线菌产生新活性次级代谢产物总数的54%(Current Medicinal Chemistry,2020,27(36):6244-6273)。更有意思的是,朱伟明教授团队统计发现67.3%的深海链霉菌天然产物表现出生物活性,如细胞毒、抑菌、抗疟等(海洋科学集刊,2016,51:86-124)。Actinomycetes are widely distributed in nature, and they can produce metabolites with various biological functions. It is worth noting that about 76% of commercially available antibiotics’ original molecular structure frameworks are all derived from Actinomycetes, among which the highly developed Streptomyces is the most prominent (Journal of Industrial Microbiology Biotechnology, 2014, 41(2): 425-431). In 2019, according to the report of Professor Li Dehai's team, Streptomyces contributed 54% of the total number of new active secondary metabolites produced by actinomycetes (Current Medicinal Chemistry, 2020, 27(36):6244-6273). What's more interesting is that Professor Zhu Weiming's team found that 67.3% of the natural products of deep-sea Streptomyces showed biological activities, such as cytotoxicity, antibacterial, antimalarial, etc. (Marine Science Journal, 2016, 51:86-124).
长期大量使用有机合成杀虫剂导致害虫产生抗药性,引发严重的环境污染、农产品安全等问题(Science,2002,297:2222-2223)。随着绿色防治理念深入人心,人们也在不断探索更加安全环保的害虫防治方法。防治害虫的目的是有效控制危害,并非只有杀死害虫唯一手段。通过拒食(或驱避)方式防虫,也可实现有效的保护。因此,昆虫拒食剂成为有机杀虫剂的重要替代。棉铃虫(Helicoverpa Armigera)是世界性广布害虫,对棉花、非洲水稻、玉米等粮食作物危害严重,其取食农作物幼嫩生长点和繁殖器官,幼虫钻蛀,啃食花蕾(北方园艺,2020,20:27-33)。现阶段对棉铃虫主要采用化学农药进行防治,但是棉铃虫已对化学农药产生抗性,而且化学农药降解速度慢并残留。因此,开发和应用绿色高效、环境友好型天然源拒食剂已吸引了广大学者的注意。The long-term and extensive use of organic synthetic insecticides has led to the development of insecticide resistance in pests, causing serious environmental pollution and agricultural product safety issues (Science, 2002, 297: 2222-2223). With the concept of green prevention and control deeply rooted in the hearts of the people, people are constantly exploring safer and more environmentally friendly pest control methods. The purpose of pest control is to effectively control the damage, not the only means of killing pests. Effective protection can also be achieved by preventing insects from feeding (or repelling). Therefore, insect repellents have become an important alternative to organic insecticides. Cotton bollworm (Helicoverpa Armigera) is a worldwide widespread pest, which seriously harms cotton, African rice, corn and other food crops. It feeds on the young growth points and reproductive organs of crops, and its larvae drill and eat flower buds (Northern Horticulture, 2020 , 20:27-33). At present, chemical pesticides are mainly used to prevent and control cotton bollworms, but cotton bollworms have developed resistance to chemical pesticides, and chemical pesticides degrade slowly and remain. Therefore, the development and application of green, efficient and environment-friendly natural source food repellents has attracted the attention of many scholars.
植物真菌病害发病率高,范围广,其发生造成农产品产量和品质下降,严重影响了农业产业的发展和安全性。例如苹果腐烂病是顽固的弱寄主寄生式真菌苹果黑腐皮壳菌(Valsa ceratosperma)所引起的病害,又称烂皮病(现代农业科技,2008,23:147-147)。苹果腐烂病菌有潜伏侵染的特点,即当果树健康时,病菌可保持潜伏状态,不易对宿主扩大致病;当侵染点周围组织死亡,寄主生命力弱时病原菌可扩展致病。该病主要发生在成龄果园,造成苹果产量下降和经济损失。目前,我国已普遍进入了苹果腐烂病的高发期,成龄果园有80%左右发生了腐烂病(王宝君,2017,安徽农业大学硕士毕业论文)。苹果腐烂病已成为我国苹果树上的重要病害之一,长期困扰着果农,严重制约了苹果的产量,造成严重的经济损失,已成为限制我国苹果生产和出口的重要病害。Plant fungal diseases have a high incidence and a wide range, and their occurrence causes a decline in the yield and quality of agricultural products, seriously affecting the development and safety of the agricultural industry. For example, apple rot is a disease caused by the stubborn weak host parasitic fungus Valsa ceratosperma, also known as rot (Modern Agricultural Science and Technology, 2008, 23: 147-147). Apple rot pathogens have the characteristics of latent infection, that is, when the fruit trees are healthy, the pathogens can maintain a latent state and are not easy to expand and cause diseases to the host; when the tissues around the infection point die and the host's vitality is weak, the pathogens can expand and cause diseases. The disease mainly occurs in mature orchards, resulting in reduced apple production and economic losses. At present, my country has generally entered a period of high incidence of apple rot disease, and about 80% of mature orchards have rot disease (Wang Baojun, 2017, master's thesis of Anhui Agricultural University). Apple rot disease has become one of the important diseases on apple trees in my country. It has plagued fruit farmers for a long time, seriously restricted the yield of apples, and caused serious economic losses. It has become an important disease that restricts the production and export of apples in my country.
目前商品化的杀真菌剂品种较多,随着传统杀菌剂的长期使用,植物病原菌出现耐药性、抗药性等问题,同时农药残留、环境污染等问题有待解决(EnvironmentalScience&Technology,2019,53(7):3347-3365)。因此,开发作用机制新颖、杀菌谱广、抗性风险低的杀菌剂是目前杀菌剂创制的重点。At present, there are many varieties of commercialized fungicides. With the long-term use of traditional fungicides, problems such as drug resistance and drug resistance of plant pathogens have appeared, and problems such as pesticide residues and environmental pollution have yet to be resolved (Environmental Science & Technology, 2019, 53 (7 ):3347-3365). Therefore, the development of fungicides with novel mechanism of action, broad bactericidal spectrum, and low risk of resistance is the current focus of fungicide creation.
发明内容Contents of the invention
本发明提供一种具有拒食功能、抗多种病原真菌作用的深海链霉菌及其应用。The invention provides a deep-sea streptomyces with anti-feeding function and anti-multiple pathogenic fungi and application thereof.
为实现上述目的,本发明采用技术方案为:In order to achieve the above object, the technical solution adopted by the present invention is:
一种深海链霉菌,中国南海深海来源的链霉菌为Streptomyces sp.NA13,于2022年8月29日保藏于中国典型培养物保藏中心,保藏编号:CCTCC M 20221343。A deep-sea streptomyces, the Streptomyces sp.NA13 derived from the deep sea of the South China Sea, was preserved in the China Center for Type Culture Collection on August 29, 2022, and the preservation number is CCTCC M 20221343.
所述深海链霉菌含有合成产生Antimycin、Candicidin、Naringenin、Isorenieratene、indigoidine-like、Ectoine、Desferrioxamine B、Surugamide A、Fredericamycin A、SAL-2242、Albaflavenone、Hopene、SGR PTMs、Diisonitrileantibiotic SF2768骨架化合物的基因簇(7.10Mb基因组)。The deep-sea Streptomyces contains gene clusters that synthesize Antimycin, Candicidin, Naringenin, Isorenieratene, indigoidine-like, Ectoine, Desferrioxamine B, Surugamide A, Fredericamycin A, SAL-2242, Albaflavenone, Hopene, SGR PTMs, Diisonitrileantibiotic SF2768 skeleton compound ( 7.10Mb genome).
一种深海链霉菌的应用,所述深海链霉菌NA13代谢产物在制备作为拒食剂或抗真菌候选药物中的应用。An application of Streptomyces deep-sea, the application of the NA13 metabolite of Streptomyces deep-sea in the preparation of antifeedant or antifungal candidate drug.
一种深海链霉菌的应用,所述深海链霉菌NA13代谢产物在制备抗霉素类化合物antimycin或环八肽类化合物surugamide中任意一类化合物中的应用。An application of Streptomyces deep-sea, the use of the NA13 metabolite of Streptomyces deep-sea in the preparation of any type of compound in the antimycin compound antimycin or the cyclic octapeptide compound surugamide.
所述深海链霉菌NA13代谢产物的制备:The preparation of the Streptomyces deep-sea NA13 metabolite:
1)将权利要求1所述深海链霉菌NA13接种于ISP3固体培养基上培养2-5d活化,然后接种于ISP3液体培养基,28℃培养2-4d作为种子液;再将发酵种子液按照体积百分比2-10%接种于ISP3液体培养基,28℃振荡培养5-10d;1) Inoculate the deep-sea Streptomyces NA13 described in
2)将发酵液离心获得菌体,用丁酮超声30-50min萃取菌体中活性成分,回收丁酮溶剂后得的粗提物A,即为深海链霉菌NA13代谢产物。2) Centrifuge the fermentation broth to obtain the bacteria, extract the active components in the bacteria with methyl ethyl ketone ultrasonically for 30-50 minutes, and recover the butanone solvent to obtain the crude extract A, which is the metabolite of Streptomyces deep-sea NA13.
将粗提物A,采用快速硅胶柱色谱法分离,按照二氯甲烷:甲醇(v/v)比为100:0-0:100梯度洗脱;将100:0-100:1洗脱的流份FB经凝胶LH20除杂,采用半制备反相HPLC,经80-90%的甲醇水溶液洗脱,流速为2.0-4.0mL/min,获得化合物antimycin Q(1)、antimycinA1a(2)、antimycin A2a(3)、antimycin A3a(4)、antimycin A4a(5)、antimycin A7a(6);将100:2-100:5洗脱的流份FC经凝胶LH20除杂,采用半制备反相HPLC,经30-40%的甲醇水溶液洗脱,流速为2.0-3.0mL/min,获得化合物N-formylantimycic acid methyl ester(7);将100:18-100:22洗脱的流份FF经凝胶LH20除杂,采用半制备反相HPLC,经40-50%的乙腈水溶液洗脱,流速为2.0-3.0mL/min,获得化合物surugamide A(8)、surugamide B(9)、surugamide D(10)、surugamide E(11)。The crude extract A was separated by flash silica gel column chromatography, and the dichloromethane:methanol (v/v) ratio was 100:0-0:100 gradient elution; the 100:0-100:1 eluted stream was Part F B was decontaminated by gel LH20, and was eluted with 80-90% methanol aqueous solution by semi-preparative reverse-phase HPLC at a flow rate of 2.0-4.0mL/min to obtain compounds antimycin Q(1), antimycinA1a(2), antimycin A2a(3), antimycin A3a(4), antimycin A4a(5), antimycin A7a(6); the fraction F C eluted at 100:2-100:5 was removed by gel LH20, and semi-preparative reaction Phase HPLC, eluted with 30-40% methanol aqueous solution, the flow rate is 2.0-3.0mL/min, to obtain the compound N-formylantimycic acid methyl ester (7); the fraction eluted at 100:18-100:22 F F Remove impurities by gel LH20, use semi-preparative reverse-phase HPLC, and elute with 40-50% acetonitrile aqueous solution at a flow rate of 2.0-3.0mL/min to obtain compounds surugamide A (8), surugamide B (9), and surugamide D (10), surugamide E (11).
一种从深海链霉菌产生新的抗霉素类(antimycin)化合物,抗霉素类(antimycinQ)化合物如(I)所示,A kind of new antimycin (antimycin) compound produced from deep-sea streptomyces, antimycin (antimycinQ) compound is shown in (I),
一种抗霉素类(antimycin)化合物的应用,所述化合物antimycin Q(1)、antimycin A1a(2)、antimycin A2a(3)、antimycin A3a(4)、antimycin A4a(5)、antimycinA7a(6)可作为拒食剂或抗真菌药物先导化合物。An application of an antimycin compound, said compound antimycin Q(1), antimycin A1a(2), antimycin A2a(3), antimycin A3a(4), antimycin A4a(5), antimycinA7a(6) It can be used as antifeedant or antifungal drug lead compound.
所述真菌为The fungus is
苹果树腐烂病菌Valsa mali F68-1Apple tree rot fungus Valsa mali F68-1
尖镰孢霉冬瓜专化型Fusarium oxysporum f.sp.Cucurmerimum S19Fusarium oxysporum f.sp. Cucurmerimum S19
本发明所具有的优点:The advantages that the present invention has:
1.本发明所得菌株NA13具有独特性,它生存环境特殊,来自于南海深海沉积物,而且通过全基因组测序,生物信息学分析可知,其基因组中含有合成产生Antimycin等25种骨架类型化合物的基因簇,具有产生多样活性物质的潜能。1. The bacterial strain NA13 obtained in the present invention has uniqueness. Its living environment is special, and it comes from the deep-sea sediments of the South China Sea, and through whole genome sequencing and bioinformatics analysis, it can be seen that its genome contains genes that synthesize and produce 25 kinds of skeleton type compounds such as Antimycin Clusters have the potential to produce diverse active substances.
2.本发明菌株NA13能同时制备抗霉素类化合物antimycin或环八肽surugamide类化合物;其中抗霉素类antimycin A1a(2)、antimycin A2a(3)、antimycin A3a(4)、antimycin A4a(5)、antimycin A7a(6)的拒食功能和抗植物病原菌活性为首次发明。2. bacterial strain NA13 of the present invention can prepare antimycin compound antimycin or cyclic octapeptide surugamide compound simultaneously; Wherein antimycin antimycin A1a (2), antimycin A2a (3), antimycin A3a (4), antimycin A4a (5 ), the antifeedant function and anti-phytopathogenic activity of antimycin A7a (6) are the first inventions.
3.本发明通过菌株NA13代谢产物制备获得抗霉素类antimycin Q,该化合物为首次发现的新化合物,制备的抗霉素类物质作为虫害拒食剂或抗真菌药物先导化合物,具有开发成天然来源的抗菌、抗虫农药等应用前景。3. The present invention obtains antimycin Q through the metabolites of bacterial strain NA13. This compound is a new compound discovered for the first time. The prepared antimycin substance is used as a lead compound of insect pest antifeedant or antifungal drug, and has the ability to be developed into a natural source Antibacterial, anti-insect pesticides and other application prospects.
附图说明Description of drawings
图1为本发明提供基于16S rDNA序列的系统进化树显示NA13分类学地位。Figure 1 shows the taxonomic status of NA13 based on the phylogenetic tree based on the 16S rDNA sequence provided by the present invention.
图2为本发明提供菌株NA13在ISP3发酵培养基中产生的抗霉素类化合物次级代谢产物。Fig. 2 is the secondary metabolites of antimycin compounds produced by the strain NA13 provided by the present invention in the ISP3 fermentation medium.
图3为本发明提供利用菌株NA13获得的化合物1-11的化学结构。Figure 3 shows the chemical structures of compounds 1-11 obtained by using the strain NA13 provided by the present invention.
图4为本发明提供利用菌株NA13获得的antimycin Q(1)的HRESIMS谱。Fig. 4 is the HRESIMS spectrum of antimycin Q(1) obtained by using the strain NA13 provided by the present invention.
图5为本发明提供利用菌株NA13获得的antimycin Q(1)的1H-1HCOSY和HMBC的重要相关。Fig. 5 is an important correlation between 1 H- 1 HCOSY and HMBC of antimycin Q(1) obtained by strain NA13 provided by the present invention.
图6为本发明提供利用菌株NA13获得的antimycin Q(1)在CH3OH中的实验ECD光谱、计算ECD光谱。Fig. 6 is the experimental ECD spectrum and calculated ECD spectrum of antimycin Q(1) in CH 3 OH obtained by using the strain NA13 provided by the present invention.
图7为抗霉素类化合物1-6对棉铃虫的拒食活性。Figure 7 shows the antifeedant activity of antimycin compounds 1-6 against cotton bollworm.
具体实施方式Detailed ways
为了更好的理解本发明的内容,下面结合具体实施例作进一步说明,但本专利的保护内容不仅限于此。In order to better understand the content of the present invention, the following will be further described in conjunction with specific examples, but the protection content of this patent is not limited thereto.
实施例1深海链霉菌NA13的鉴定和特征Identification and characteristics of
菌株NA13分离自中国南海深海沉积物(E 113°2.353′,N 13°58.498′),于2022年8月29日保藏于中国典型培养物保藏中心,保藏编号:CCTCC M20221343。该菌在ISP3和ISP4培养基上生长旺盛,在ISP2和高氏一号培养基生长一般。形成圆形菌落,无色素产生(表1)。Strain NA13 was isolated from deep-sea sediments in the South China Sea (E 113°2.353′, N 13°58.498′), and was deposited in the China Center for Type Culture Collection on August 29, 2022, with the preservation number: CCTCC M20221343. The bacterium grows vigorously on ISP3 and ISP4 medium, and grows generally on ISP2 and Gaoshi No. 1 medium. Round colonies formed without pigmentation (Table 1).
表1深海链霉菌NA13的生长特征Table 1 Growth characteristics of deep-sea Streptomyces NA13
将链霉菌NA13接种于ISP3液体培养基中,28℃培养36h后按照常规方法提取总DNA。然后采用全基因组鸟枪法(Whole Genome Shotgun,WGS)策略,利用第二代测序技术(Next Generation Sequencing,NGS),基于Illumina NovaSeq测序平台,同时利用第三代单分子测序技术,基于Oxford Nanopore ONT测序平台进行测序,获得菌株NA13的基因组完成图,线性染色体基因组大小约6.91Mb,GC content为73.44%,含有一个线性质粒,大小约186.13kb,GC content为68.83%。对其16S rRNA基因序列进行BLAST分析,发现其与三个不同种的标准菌株S.daghestanicus NRRL B-5418T、S.albidoflavus DSM 40455T和S.violascens ISP 5183T序列同源性高达100%。进一步基于16S rDNA序列构建的系统进化树显示,这些菌株聚类在同一分支(图1),显示出它们具有最亲密的遗传进化关系。最后计算基因组的平均核苷酸一致性(Average Nucleotide Identity,ANI)值显示链霉菌NA13与S.albidoflavus DSM 40455T的ANI达到98.7%,说明它们是一个种。因此将菌株NA13鉴定为微白黄链霉菌(Streptomyces albidoflavus)。Streptomyces NA13 was inoculated in ISP3 liquid medium, cultured at 28°C for 36 hours, and total DNA was extracted according to conventional methods. Then adopt the Whole Genome Shotgun (WGS) strategy, use the second generation sequencing technology (Next Generation Sequencing, NGS) based on the Illumina NovaSeq sequencing platform, and use the third generation single molecule sequencing technology based on the Oxford Nanopore ONT sequencing The platform performs sequencing and obtains the complete genome map of strain NA13. The size of the linear chromosome genome is about 6.91Mb, and the GC content is 73.44%. It contains a linear plasmid with a size of about 186.13kb and a GC content of 68.83%. BLAST analysis of its 16S rRNA gene sequence showed that it had 100% sequence homology with three different standard strains S. daghestanicus NRRL B-5418 T , S. albidoflavus DSM 40455 T and S. violascens ISP 5183 T . A further phylogenetic tree based on the 16S rDNA sequence showed that these strains were clustered in the same branch (Figure 1), showing that they had the closest genetic evolutionary relationship. Finally, calculating the average nucleotide identity (Average Nucleotide Identity, ANI) value of the genome showed that the ANI of Streptomyces NA13 and S.albidoflavus DSM 40455 T reached 98.7%, indicating that they are one species. Strain NA13 was therefore identified as Streptomyces albidoflavus.
其中,微白黄链霉菌NA13的16S rRNA基因序列16S rDNA为:Wherein, the 16S rRNA gene sequence 16S rDNA of Streptomyces alboflavinus NA13 is:
>Streptomyces albidoflavus NA13 16S rDNA>Streptomyces albidoflavus NA13 16S rDNA
ACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGATGAACCGCTTTCGGGCGGGGATTAGTGGCGAACGGGTGAGTAACACGTGGGCAATCTGCCCTGCACTCTGGGACAAGCCCTGGAAACGGGGTCTAATACCGGATATGACTGTCCATCGCATGGTGGATGGTGTAAAGCTCCGGCGGTGCAGGATGAGCCCGCGGCCTATCAGCTTGTTGGTGAGGTAGTGGCTCACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGAAGAAGCGAAAGTGACGGTACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCACGTCGGTTGTGAAAGCCCGGGGCTTAACCCCGGGTCTGCAGTCGATACGGGCAGGCTAGAGTTCGGTAGGGGAGATCGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGGATCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGGTGGGCACTAGGTGTGGGCAACATTCCACGTTGTCCGTGCCGCAGCTAACGCATTAAGTGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGCTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACATACACCGGAAACGTCTGGAGACAGGCGCCCCCTTGTGGTCGGTGTACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCCGTGTTGCCAGCAGGCCCTTGTGGTGCTGGGGACTCACGGGAGACCGCCGGGGTCAACTCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCCTTATGTCTTGGGCTGCACACGTGCTACAATGGCCGGTACAATGAGCTGCGATACCGCGAGGTGGAGCGAATCTCAAAAAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCATTGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGTAACACCCGAAGCCGGTGGCCCAACCCCTTGTGGGAGGGAGCTGTCGAAGGTGGGACTGGCGATTGGGACGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCTTTACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGATGAACCGCTTTCGGGCGGGGATTAGTGGCGAACGGGTGAGTAACACGTGGGCAATCTGCCCTGCACTCTGGGACAAGCCCTGGAAACGGGGTCTAATACCGGATATGACTGTCCATCGCATGGTGGATGGTGTAAAGCTCCGGCGGTGCAGGATGAGCCCGCGGCCTATCAGCTTGTTGGTGAGGTAGTGGCTCACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGAAGAAGCGAAAGTGACGGTACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCACGTCGGTTGTGAAAGCCCGGGGCTTAACCCCGGGTCTGCAGTCGATACGGGCAGGCTAGAGTTCGGTAGGGGAGATCGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGGCGAAGGCGGATCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGGTGGGCACTAGGTGTGGGCAACATTCCACGTTGTCCGTGCCGCAGCTAACGCATTAAGTGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGCTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACATACACCGGAAACGTCTGGAGACAGGCGCCCCCTTGTGGTCGGTGTACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCCGTGTTGCCAGCAGGCCCTTGTGGTGCTGGGGACTCACGGGAGACCGCCGGGGTCAACTCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCCTTATGTCTTGGGCTGCACACGTGCTACAATGGCCGGTACAATGAGCTGCGATACCGCGAGGTGGAGCGAATCTCAAAAAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCATTGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGTAACACCCGAAGCCGGTGGCCCAACCCCTTGTGGGAGGGAGCTGTCGAAGGTGGGACTGGCGATTGGGACGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCTTT
使用antiSMASH分析和手动矫正发现菌株NA13蕴含有25个次级代谢产物基因簇,具有编码产生Antimycin、Candicidin、Naringenin、Isorenieratene、indigoidine-like、Ectoine、Desferrioxamine B、Surugamide A、Fredericamycin A、SAL-2242、Albaflavenone、Hopene、SGR PTMs、Diisonitrile antibiotic SF2768骨架化合物的潜能,以及合成多种新颖PKS、RiPP-like、NRPS、Terpene和Siderophore等类化合物的潜能(表2)。说明NA13具有制备表中所述类型化合物的能力。Using antiSMASH analysis and manual correction, it was found that strain NA13 contained 25 secondary metabolite gene clusters, which were encoded to produce Antimycin, Candicidin, Naringenin, Isorenieratene, indigoidine-like, Ectoine, Desferrioxamine B, Surugamide A, Fredericamycin A, SAL-2242, The potential of Albaflavenone, Hopene, SGR PTMs, Diisonitrile antibiotic SF2768 backbone compounds, and the potential to synthesize a variety of novel PKS, RiPP-like, NRPS, Terpene, and Siderophore compounds (Table 2). It shows that NA13 has the ability to prepare the types of compounds mentioned in the table.
表2菌株NA13合成多样次级代谢产物的潜能Table 2 Potential of strain NA13 to synthesize various secondary metabolites
实施例2深海链霉菌NA13生产多种类型生物活性物质和制备方法
链霉菌NA13使用ISP3培养基发酵制备获得了一系列抗霉素类和环八肽类等类型的次级代谢活性产物(图2);具体为:Streptomyces NA13 was fermented with ISP3 medium to obtain a series of secondary metabolic active products such as antimycins and cyclic octapeptides (Figure 2); specifically:
将深海链霉菌NA13接种于ISP3固体培养基上培养72h活化,然后接种于ISP3液体培养基,28℃培养72h作为种子液;再将发酵种子液按照体积比1:18接种于相同的发酵培养基,28℃振荡培养7天。将发酵液离心获得菌体,用丁酮超声30-50min萃取菌体中活性成分,回收丁酮溶剂后得的粗提物A,即为深海链霉菌NA13代谢产物。将粗提物A,采用快速硅胶柱色谱法分离,按照二氯甲烷:甲醇(v/v)比为100:0-0:100梯度洗脱,获得7个流分(FA-FG)。将100:1洗脱的流份FB经凝胶LH20除杂,采用半制备反相HPLC,经85%的甲醇水溶液洗脱,流速为3.0mL/min,获得化合物antimycin Q(化合物1)(5.7mg,tR:18.5min)、antimycin A1a(2)(6.4mg,tR:20.2min)、antimycin A2a(3)(8.0mg,tR:15.8min)、antimycin A3a(4)(4.8mg,tR:12.5min)、antimycin A4a(5)(5.3mg,tR:10.1min)、antimycin A7a(6)(4.0mg,tR:11.5min)。将100:2-100:5洗脱的流份FC经凝胶LH20除杂,采用半制备反相HPLC,经40%的甲醇水溶液洗脱,流速为2.5mL/min,获得化合物N-formylantimycic acid methylester(7)(2.8mg,tR:17.3min)。将100:20洗脱的流份FF经凝胶LH20除杂,采用半制备反相HPLC,经45%的乙腈水溶液洗脱,流速为2.5mL/min,获得化合物surugamide A(8)(52.3mg,tR:22.1min)、surugamide B(9)(2.5mg,tR:16.5min)、surugamide D(10)(3.8mg,tR:18.3min)、surugamide E(11)(3.6mg,tR:19.4min)。上述化合物结构如图3所示。Streptomyces deep-sea NA13 was inoculated on ISP3 solid medium and cultured for 72 hours to activate, then inoculated in ISP3 liquid medium, and cultured at 28°C for 72 hours as the seed liquid; then the fermented seed liquid was inoculated in the same fermentation medium at a volume ratio of 1:18 , cultured with shaking at 28°C for 7 days. The fermentation broth was centrifuged to obtain the bacteria, the active ingredients in the bacteria were extracted by ultrasound for 30-50 minutes with butanone, and the crude extract A obtained after recovering the butanone solvent was the metabolite of Streptomyces deep-sea NA13. The crude extract A was separated by flash silica gel column chromatography and eluted according to the dichloromethane:methanol (v/v) ratio of 100:0-0:100 gradient to obtain 7 fractions (F A -F G ) . The fraction F B eluted at 100:1 was removed by gel LH20, and semi-preparative reversed-phase HPLC was used to elute with 85% aqueous methanol at a flow rate of 3.0 mL/min to obtain compound antimycin Q (compound 1) ( 5.7mg, t R :18.5min), antimycin A1a(2)(6.4mg, t R :20.2min), antimycin A2a(3)(8.0mg, t R :15.8min), antimycin A3a(4)(4.8mg ,t R :12.5min), antimycin A4a(5)(5.3mg,t R :10.1min), antimycin A7a(6)(4.0mg,t R :11.5min). The fraction F C eluted at 100:2-100:5 was removed by gel LH20, and semi-preparative reverse-phase HPLC was used to elute with 40% methanol aqueous solution at a flow rate of 2.5mL/min to obtain the compound N-formylantimycic acid methylester (7) (2.8 mg, t R : 17.3 min). The 100:20 eluted fraction F F was removed by gel LH20, and semi-preparative reversed-phase HPLC was used to elute through 45% acetonitrile aqueous solution, and the flow rate was 2.5mL/min to obtain compound surugamide A (8) (52.3 mg,t R :22.1min), surugamide B(9)(2.5mg,t R :16.5min), surugamide D(10)(3.8mg,t R :18.3min), surugamide E(11)(3.6mg, t R : 19.4min). The structures of the above compounds are shown in Figure 3.
对上述获得化合物的结构进行解析,具体为化合物1为淡黄色粉末状物,HRESIMS数据显示一个m/z 549.2809的[M+H]+离子峰(图4),对应分子式为C28H40N2O9,不饱和度为10。紫外光谱中228nm,317nm处的紫外吸收为抗霉素类化合物的特征吸收。结合1D NMR(DMSO-d6)和HSQC谱可知28个碳归属为5个羰基碳信号(δC 179.4、173.9、169.7、169.4和160.4)、6个芳香碳信号(δC 150.6、126.9、125.0、123.1、118.2和114.3)、7个次甲基碳信号(δC 75.3、73.2、72.0、54.0、49.7、39.5和32.8)、4个亚甲基碳信号(δC 33.5、28.6、25.9和25.5)、6个甲基碳信号(δC 18.7、17.8、16.6、15.2、11.4和11.1),以上这些核磁信号表明存在抗霉素骨架结构。NH-3′(δH 9.81)与H-8′(δH 8.31)的1H-1H COSY相关信号可推测存在一个NH-CHO的片段。根据一组芳香碳氢信号(δC 114.3,δC 150.6,δC 126.9,δH 8.23/δC125.0,δH 7.85/δC 123.1和δH 6.91/δC 118.2)(见表3)以及NH-3′(δH 9.81)和C-4′(δC125.0)HMBC相关信号,可推断存在N-甲酰基-氨基水杨酸片段。1H-1H COSY谱中H-7/H-1″/H-2″/H-3″/H-4″/H-5″/H-6″的相关信号和HMBC谱中H-6″与C-2″和C-4″的相关信号,可推测存在一个3-甲基己烷基团(图5)。1H-1H COSY谱中H-2″′/H-3″′/H-4″′/H-5″′的相关信号和HMBC谱中H-8、H-3″′和H-5″′分别与C-1″′的相关信号,可推测存在一个2-甲基丁酰基团(图5)。因为该化合物不饱和度为10,除去5个羰基信号和一个苯环,最后一个不饱和度应该为一个单环。结合1H-1H COSY谱中NH-3/H-3/H-4/H-11和H-10/H-9/H-8/H-7/H-1″相关信号以及HMBC谱中H-3、H-4和H-9分别与C-2相关信号、H-4和H-7分别与C-6相关信号,可推断存在一个九元二内酯环片段(图5)。因此,化合物1的平面结构如图5所示。化合物1的相对构型根据藕合常数和NOESY谱确定。NOESY谱中可见H-3/H-4、H-7/H-9/H-11、H-8/H-10的连接,而且H-7/H-8与H-8/H-9的大耦合常数(9-10Hz),说明H-3、H-4、H-8和H-10在一个平面,H-7和H-9在另一个平面(图5)。通过计算ECD获得的化合物1的母核绝对构型是3S,4R,7R,8R和9S(图6)。因此化合物1作为新的化合物被命名为antimycin Q(图3)。Analyze the structure of the compound obtained above, specifically compound 1 is a light yellow powder, and the HRESIMS data shows a [M+H] + ion peak of m/z 549.2809 (Figure 4), corresponding to the molecular formula C 28 H 40 N 2 O 9 , the degree of unsaturation is 10. The ultraviolet absorption at 228nm and 317nm in the ultraviolet spectrum is the characteristic absorption of antimycin compounds. Combining 1D NMR (DMSO-d 6 ) and HSQC spectra, it can be seen that the 28 carbons are assigned to 5 carbonyl carbon signals (δ C 179.4, 173.9, 169.7, 169.4 and 160.4), and 6 aromatic carbon signals (δ C 150.6, 126.9, 125.0 , 123.1, 118.2 and 114.3), seven methylene carbon signals (δ C 75.3, 73.2, 72.0, 54.0, 49.7, 39.5 and 32.8), four methylene carbon signals (δ C 33.5, 28.6, 25.9 and 25.5 ), six methyl carbon signals (δ C 18.7, 17.8, 16.6, 15.2, 11.4 and 11.1), these NMR signals indicated the presence of antimycin backbone structure. The 1 H- 1 H COZY correlation signals of NH-3' (δ H 9.81) and H-8' (δ H 8.31) can be speculated that there is a fragment of NH-CHO. According to a group of aromatic hydrocarbon signals (δ C 114.3, δ C 150.6, δ C 126.9, δ H 8.23/δ C 125.0, δ H 7.85/δ C 123.1 and δ H 6.91/δ C 118.2) (see Table 3) and NH-3' (δ H 9.81) and C-4' (δ C 125.0) HMBC-related signals, inferring the presence of N-formyl-aminosalicylic acid fragments. 1 H- 1 H COZY spectrum H-7/H-1″/H-2″/H-3″/H-4″/H-5″/H-6″ correlation signal and HMBC spectrum H- 6″ and the correlation signals of C-2″ and C-4″, it can be speculated that there is a 3-methylhexane group (Figure 5). H-2″′/H-3 in 1 H- 1 H COZY spectrum The correlation signals of "'/H-4"'/H-5"' and the correlation signals of H-8, H-3"' and H-5"' in the HMBC spectrum and C-1"' respectively can be speculated to exist A 2-methylbutyryl group (Figure 5). Since this compound has an unsaturation of 10, removing the five carbonyl signals and one benzene ring, the final unsaturation should be a single ring. Combining the NH- 3 /H-3/H-4/H-11 and H-10/H-9/H-8/H-7/H-1" related signals in the 1 H- 1 H COZY spectrum and the HMBC spectrum Among them, H-3, H-4 and H-9 are respectively related to C-2, and H-4 and H-7 are respectively related to C-6. It can be inferred that there is a nine-membered dilactone ring fragment (Figure 5) Therefore, the planar structure of
表3化合物1的1H NMR和13C NMR数据(600MHz,DMSO-d6,δin ppm,J in Hz)Table 3 1 H NMR and 13 C NMR data of Compound 1 (600MHz, DMSO-d 6 , δin ppm, J in Hz)
其他的已知化合物antimycin A1a(2)、antimycin A2a(3)、antimycin A3a(4)、antimycin A4a(5)、antimycin A7a(6)、N-formylantimycic acid methyl ester(7)、surugamide A(8)、surugamide B(9)、surugamide D(10)、surugamide E(11)(图3)均由1DNMR光谱和旋光等数据比较报道相关文献确定。Other known compounds antimycin A1a(2), antimycin A2a(3), antimycin A3a(4), antimycin A4a(5), antimycin A7a(6), N-formylantimycic acid methyl ester(7), surugamide A(8) , surugamide B(9), surugamide D(10), and surugamide E(11) (Fig. 3) were all determined by comparing and reporting relevant literature on 1DNMR spectra and optical rotation data.
实施例3抗霉素类化合物拒食功能活性测定Example 3 Determination of Antifeedant Functional Activity of Antimycin Compounds
测定方法:选取棉铃虫(Helicoverpa Armigera)进行拒食功能评价。测定方法:先用打孔器将厚度均匀、干净新鲜的小白菜(Brassica chinensis)叶片打成直径为1cm的圆形小叶碟,处理组取供试化合物溶液(单体化合物(化合物1-6)三个不同浓度分别为1、0.5、0.25mg/ml)50μL均匀涂于叶片背面,空白对照组涂相同体积的甲醇溶液,待叶碟自然晾干后,放入预先垫有滤纸保湿的培养皿(直径9cm)中,每个培养皿中放入2片处理叶碟和2片对照叶碟,十字交叉放置。每个培养皿接入2只饥饿12h的三龄棉铃虫,并将培养皿放入25℃光照培养箱中,以高浓度中对照被取食80%左右时间为截止时间,用坐标方格纸测量每片叶碟被取食的面积。实验重复至少5次以上。计算拒食率:拒食率(%)=(AC-AT)/(AC+AT)×100%,其中,AC、AT分别表示空白对照组和样品处理组叶碟被取食的面积。Determination method: Cotton bollworm (Helicoverpa Armigera) was selected to evaluate the antifeeding function. Measuring method: first punch uniform thickness, clean and fresh Chinese cabbage (Brassica chinensis) leaves into a circular leaflet disc with a diameter of 1 cm, and the treatment group takes the test compound solution (monomer compound (compound 1-6) 50 μL of three different concentrations (1, 0.5, 0.25 mg/ml) were evenly applied to the back of the leaves, and the same volume of methanol solution was applied to the blank control group. After the leaf discs were naturally dried, they were placed in a Petri dish pre-matched with filter paper for moisture retention. (9 cm in diameter), put 2 treatment leaf discs and 2 control leaf discs in each petri dish, and place them crosswise.
实验结果:NA13粗提物在5mg/mL时表现出显著的拒食活性(AI=83.33%)。从图7中可以看出,本发明所提及的抗霉素类化合物1-6对棉铃虫均具有不同程度的拒食活性。特别是化合1-4在1mg/mL时的拒食活性(AI=87.83%、88.46%、89.86%、90.79%);可初步推断抗霉素类母核九元双内酯环结构为该活性必要基团。Experimental results: The crude extract of NA13 exhibited significant antifeedant activity at 5 mg/mL (AI=83.33%). It can be seen from FIG. 7 that the antimycin compounds 1-6 mentioned in the present invention all have different degrees of antifeedant activity against cotton bollworms. Especially the antifeedant activity of compound 1-4 at 1 mg/mL (AI=87.83%, 88.46%, 89.86%, 90.79%); it can be preliminarily inferred that the nine-membered dilactone ring structure of the antimycin core is necessary for this activity group.
实施例4抗霉素类化合物抗真菌活性测定
选取苹果树腐烂病菌Valsa mali F68-1和尖镰孢霉冬瓜专化型菌Fusariumoxysporum f.sp.Cucurmerimum S19作为抗真菌活性评价的菌株。The apple tree rot pathogen Valsa mali F68-1 and Fusarium oxysporum f.sp. Cucurmerimum S19 were selected as the strains for antifungal activity evaluation.
测定方法:将病原真菌采用挖块法接种到PSA平板的中央,置于28℃的恒温培养箱中,培养2-3d,待菌落直径4cm左右时,在平板上对称放置添加10μL供试品溶液(256、128、64、32、16、8、4、2、1、0.5和0.25μg/mL)的滤纸片。阴性对照为甲醇溶液,阳性对照为制霉菌素。将平板置于28℃的恒温培养箱中培养2d。肉眼可观察到的无菌生长的最低供试品浓度作为最低抑菌浓度(minimal inhibitory concentration,MIC),每个试验重复三次。Determination method: inoculate the pathogenic fungi into the center of the PSA plate by digging, place in a constant temperature incubator at 28°C, and cultivate for 2-3 days. When the diameter of the colony is about 4cm, place symmetrically on the plate and add 10 μL of the test solution (256, 128, 64, 32, 16, 8, 4, 2, 1, 0.5, and 0.25 μg/mL) of filter paper. The negative control was methanol solution, and the positive control was nystatin. The plate was placed in a constant temperature incubator at 28°C for 2 days. The lowest concentration of the test substance at which the sterile growth could be observed with the naked eye was taken as the minimum inhibitory concentration (minimal inhibitory concentration, MIC), and each test was repeated three times.
实验结果:测试结果显示分离得到的抗霉素类化合物1-6均不同程度的展现了对2种病原真菌的抑制活性,但活性微弱。化合物7对2种病原真菌无抑制活性(表4)。Experimental results: The test results showed that the isolated antimycin compounds 1-6 showed different degrees of inhibitory activity against the two pathogenic fungi, but the activity was weak.
表4化合物1-7抗真菌活性Table 4 compound 1-7 antifungal activity
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