CN101058812B - Rice SNARE protein gene OsNPSN11 and its application - Google Patents
Rice SNARE protein gene OsNPSN11 and its application Download PDFInfo
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Abstract
本发明公开了水稻SNARE蛋白基因OsNPSN11及其应用方法,属于基因工程领域。该基因的cDNA序列SEQ ID NO.1及其编码氨基酸序列SEQID NO.2。本发明基因OsNPSN11为水稻中首次报道,mRNA表达分析表明该基因受稻瘟病菌接种诱导,对获得的转基因植株进行PCR,Southern杂交以及RT-PCR验证后进行水稻的抗病性评价,结果表明,转基因植株与对照相比表现出对稻瘟病菌的明显抗性。因此,OsNPSN11可作为目的基因导入植物,提高植物的抗病性。The invention discloses a rice SNARE protein gene OsNPSN11 and an application method thereof, belonging to the field of genetic engineering. The cDNA sequence of the gene is SEQ ID NO.1 and its coded amino acid sequence is SEQ ID NO.2. The gene OsNPSN11 of the present invention is reported for the first time in rice, and mRNA expression analysis shows that the gene is induced by the inoculation of Magnaporthe grisea, and the obtained transgenic plants are subjected to PCR, Southern hybridization and RT-PCR verification to evaluate the disease resistance of rice, and the results show that, Compared with the control, the transgenic plants showed obvious resistance to blast fungus. Therefore, OsNPSN11 can be introduced into plants as a target gene to improve plant disease resistance.
Description
技术领域technical field
本发明公开了水稻SNARE蛋白基因OsNPSN11及其应用,属于基因工程领域。The invention discloses rice SNARE protein gene OsNPSN11 and application thereof, belonging to the field of genetic engineering.
背景技术Background technique
在真核生物细胞内囊泡运输过程中的膜融合主要是由SNARE蛋白介导的,SNARE蛋白的结构高度保守。McNew等(2000McNew JA,Parlati F,Fukuda R,Johnston RJ,Paz K,Paumet F,SollnerTH,Rothman JE(2000)Compartmental specificity of cellular membranc fusion encoded in SNARE proteins.Nature,407(6801):153-159)对人类、果蝇、酵母和拟南芥的全基因组序列进行SNARE蛋白基因的预测,发现它们所含SNARE蛋白家族成员的数目分别为35、20、21和68,拟南芥中SNARE蛋白数目明显高于其他物种,且组成复杂。目前许多真核生物全基因组测序已经完成,这为弄清SNARE蛋白家族在不同真核生物基因组范围内的分布和推测其功能提供了大量的信息,也有利于发现更多新的SNARE蛋白。Membrane fusion during vesicle transport in eukaryotic cells is mainly mediated by SNARE proteins, whose structures are highly conserved. McNew et al. (2000McNew JA, Parlati F, Fukuda R, Johnston RJ, Paz K, Paumet F, SollnerTH, Rothman JE (2000) Compartmental specificity of cellular membrane fusion encoded in SNARE proteins. Nature, 407(6801): 153-159) The prediction of SNARE protein genes on the whole genome sequences of human, fruit fly, yeast and Arabidopsis found that the number of SNARE protein family members contained in them were 35, 20, 21 and 68 respectively, and the number of SNARE proteins in Arabidopsis was obvious Higher than other species, and the composition is complex. At present, the whole genome sequencing of many eukaryotic organisms has been completed, which provides a lot of information for clarifying the distribution of the SNARE protein family in different eukaryotic genomes and speculating on its function, and is also conducive to the discovery of more new SNARE proteins.
研究发现,植物中的SNARE蛋白促进植物细胞板形成,能与离子通道蛋白相互作用,有利于植物的正常生长发育,能提高植物的抗病性及参与植物的向重力性作用。植物SNARE蛋白不仅对植物生长发育起作用,在抵御生物与非生物胁迫过程中也起重要的作用(Pratelli et al.,2004 Pratelli R,Sutter JU,Blatt MR(2004)A new catch inthe SNARE.Trends Plant Sci9(4):187-195)。Collins等(2003Collins NC,Thordahl-Christensen H,Lipka V,Bau s,Kombrink E,Qiu J,Hückelhoven R,Stein M,Freialdenhoven A,Somerville SC,Schulze-Lefert P(2003)SNARE-protein-mediated diseaseresistance at the plant cell wall.Nature 425:973-977)在研究与大麦非寄主抗性相关基因HvSyp121时,发现其突变体叶片被侵染部位聚集大量载着H2O2的囊泡,推测突变体细胞中囊泡未能与质膜融合,H2O2介导的抗病信号传导途径受阻,使得病原菌分泌的有毒物质进入植物体内致病(Dangl et al.,2001Dang1 JL,Jones JD(2001)Plant pathogens and integrated defence responses to infection.Nature 411:826-833;Tsanko et al.,2005Tsanko SG,Jacques H(2005)Hydrogen peroxide as a signal controlling plantprogrammed cell death.J Cell Biol 168(1):17-20)。表明植物中SNARE蛋白与植物的基本抗病性即非寄主抗性相关。Studies have found that SNARE proteins in plants promote the formation of plant cell plates, can interact with ion channel proteins, are beneficial to the normal growth and development of plants, can improve plant disease resistance and participate in plant gravity. Plant SNARE proteins not only play a role in plant growth and development, but also play an important role in resisting biotic and abiotic stresses (Pratelli et al., 2004 Pratelli R, Sutter JU, Blatt MR (2004) A new catch in the SNARE.Trends Plant Sci 9(4):187-195). Collins et al (2003Collins NC, Thordahl-Christensen H, Lipka V, Baus s, Kombrink E, Qiu J, Hückelhoven R, Stein M, Freialdenhoven A, Somerville SC, Schulze-Lefert P(2003) SNARE-protein-mediated disease resistance at the plant cell wall.Nature 425:973-977) when studying the gene HvSyp121 related to barley non-host resistance, it was found that a large number of vesicles loaded with H 2 O 2 gathered in the infected part of the mutant leaves, and it was speculated that the mutant cells The vesicle fails to fuse with the plasma membrane, and the H2O2 - mediated disease resistance signal transduction pathway is blocked, allowing the toxic substances secreted by the pathogen to enter the plant to cause disease (Dangl et al., 2001Dang1 JL, Jones JD(2001) Plant pathogens and integrated defense responses to infection. Nature 411: 826-833; Tsanko et al., 2005 Tsanko SG, Jacques H (2005) Hydrogen peroxide as a signal controlling plant programmed cell death. J Cell Biol 168(1): 17-20). It shows that SNARE proteins in plants are related to the basic disease resistance of plants, that is, non-host resistance.
发明内容Contents of the invention
技术问题technical problem
本发明的目的在于公开水稻SNARE蛋白基因OsNPSN11及其应用,该基因来自水稻,可作为目的基因导入植物,提高植物抗病性,进行植物品种改良。The object of the present invention is to disclose the rice SNARE protein gene OsNPSN11 and its application. The gene comes from rice and can be introduced into plants as a target gene to improve plant disease resistance and improve plant varieties.
技术方案Technical solutions
水稻SNARE蛋白基因OsNPSN11的应用,包括:The application of rice SNARE protein gene OsNPSN11, including:
1)总RNA的提取选用水稻抗稻瘟病菌品种“黑壳子粳”(太湖流域粳稻地方品种),待水稻幼苗长至3-4叶期,用稻瘟病菌孢子(5×104ml-1)接种处理,24小时后立即取叶片液氮冷冻,保存于-80℃冰箱。取部分叶片,用研钵研碎,转移入盛有Trizol裂解液的1.5mLEP管,充分振荡后,抽提总RNA,电泳鉴定总RNA质量;1) For the extraction of total RNA , the rice blast fungus-resistant variety "Hei Ke Zi Jing" (local species of Japonica rice in the Taihu Lake Basin) was selected . 1 ) After the inoculation treatment, the leaves were immediately frozen in liquid nitrogen 24 hours later and stored in a -80°C refrigerator. Take part of the leaves, grind them with a mortar, transfer them into a 1.5mLEP tube filled with Trizol lysate, shake fully, extract the total RNA, and identify the quality of the total RNA by electrophoresis;
2)水稻SNARE蛋白基因OsNPSN11的克隆以拟南芥基因AtNPSN11(Zheng et al.,2002zheng H,Bednarek SY,Sanderfoot AA,Alonso J,Ecker JR,Raikhel NV(2002)NPSN11is a cell plate-associatedSNARE protein that interacts with the syntaxin KNOLLE.Plant Physiol 129:530-539)序列为探针,搜索水稻基因组序列和EST序列数据库,拼接得到880bp水稻SNARE蛋白基因OsNPSN11的全长序列,并设计两端引物:2) The cloning of rice SNARE protein gene OsNPSN11 is based on Arabidopsis gene AtNPSN11 (Zheng et al., 2002zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV (2002) NPSN11 is a cell plate-associated SNARE protein that interacts With the syntax KNOLLE.Plant Physiol 129:530-539) sequence as a probe, search the rice genome sequence and EST sequence database, splicing to get the full-length sequence of 880bp rice SNARE protein gene OsNPSN11, and design primers at both ends:
PI:5-TGCTTTTGGTTGTTGTGATCC-3,PI: 5-TGCTTTTGGTTGTTGTGATCC-3,
P2:5-CTGCTCITGGTTGATTTGTTC-3。P2: 5-CTGCTCITGGTTGATTTGTTC-3.
将步骤1)获得的总RNA反转录合成cDNA第一链,以此为模板用高保真Pfu酶进行PCR扩增,PCR程序如下:94℃预变性5分钟,94℃变性45s,56℃复性1min,72℃延伸1.5min,35个循环后,72℃延伸5min,最后Tag酶72℃保温10min末端加A后克隆至pGEM-T载体,委托上海生工公司测序获得水稻SNARE蛋白基因OsNPSN11的cDNA序列SEQ ID NO.1;The total RNA obtained in step 1) was reverse-transcribed to synthesize the first strand of cDNA, which was used as a template for PCR amplification with high-fidelity Pfu enzyme. The PCR program was as follows: pre-denaturation at 94°C for 5 minutes, denaturation at 94°C for 45 seconds, and repeat at 56°C. 1 min at 72°C, 1.5 min at 72°C, 35 cycles, and 5 min at 72°C. Finally, Tag enzyme was incubated at 72°C for 10 min. After adding A at the end, it was cloned into the pGEM-T vector, and the rice SNARE protein gene OsNPSN11 was obtained by entrusting Shanghai Sangong Company to sequence. cDNA sequence SEQ ID NO.1;
3)植物表达载体的构建根据水稻SNARE蛋白基因OsNPSN11的cDNA序列(见SEQ ID NO.1),在起始密码子ATG附近设计引物P3并引入限制性内切酶位点XbaI,引物序列为:3) Construction of plant expression vector According to the cDNA sequence (seeing SEQ ID NO.1) of rice SNARE protein gene OsNPSN11, design primer P3 near the start codon ATG and introduce restriction endonuclease site XbaI, the primer sequence is:
P3:5-ATTCTAGATGGATTTGGAGTCGGTCA-3.P3: 5-AT TCTAGA TGGATTTGGAGTCGGTCA-3.
以步骤2)中获得的PCR扩增产物为模板,用P3和P2引物经PCR扩增后,将OsNPSN11的cDNA克隆至中间载体pGEM-T,利用引物P3引入的XbaI酶切位点和pGEM-T载体上的SalI酶切位点进一步克隆至双元表达载体pCAMBIA1301,测序鉴定确保表达载体中编码区阅读框架正确;Using the PCR amplification product obtained in step 2) as a template, after PCR amplification with P3 and P2 primers, the cDNA of OsNPSN11 was cloned into the intermediate vector pGEM-T, and the XbaI restriction site introduced by primer P3 and pGEM- The SalI restriction site on the T vector was further cloned into the binary expression vector pCAMBIA1301, and sequenced to ensure that the reading frame of the coding region in the expression vector was correct;
4)转基因植株的获得将步骤3)获得的表达载体pCAMBIA1301转入农杆菌,进一步转入水稻感稻瘟病菌品种“苏御糯”,对获得的转基因植株进行PCR,Southern杂交以及RT-PCR验证后进行水稻的抗病性评价,将生长至3-4叶期的转基因T1代植株进行稻瘟病菌孢子接种处理,7天后调查植株的病级数以及发病叶片病斑数目和病斑长度,与对照相比具有明显抗性的转基因水稻植株即为获得的抗稻瘟病菌转基因植株。4) Acquisition of transgenic plants The expression vector pCAMBIA1301 obtained in step 3) was transferred into Agrobacterium, and further transferred into the rice blast pathogen variety "Su Yunuo", and the obtained transgenic plants were verified by PCR, Southern hybridization and RT-PCR Carry out the disease resistance evaluation of paddy rice afterward, the transgenic T1 generation plant that grows to 3-4 leaf stage is carried out the spore inoculation process of blast fungus, investigate the disease grade number of plant after 7 days and diseased leaf lesion number and lesion length, and The transgenic rice plants with obvious resistance compared with the control are the obtained blast-resistant transgenic plants.
有益效果Beneficial effect
1、本发明公开了水稻SNARE蛋白基因OsNPSN11及其所编码的蛋白质。水稻SNARE蛋白基因OsNPSN11为水稻中首次报道,mRNA表达分析表明该基因受稻瘟病菌接种诱导,转基因实验证明该基因的过量表达提高了水稻对稻瘟病菌的抗性。因此有望可作为目的基因导入植物,提高植物抗病性,以进行植物品种改良。1. The present invention discloses rice SNARE protein gene OsNPSN11 and its encoded protein. The rice SNARE protein gene OsNPSN11 was reported for the first time in rice. The mRNA expression analysis showed that the gene was induced by the inoculation of Magnaporthe grisea. The transgenic experiment proved that the overexpression of this gene improved the resistance of rice to Magnaporthe grisea. Therefore, it is expected to be used as a target gene to introduce into plants, improve plant disease resistance, and improve plant varieties.
2、本发明的OsNPSN11基因来自水稻,具有适合于水稻等单子叶植物表达的优化密码子,其基因工程受体植物除了双子叶植物,如大豆、棉花、烟草等之外更加适合于水稻、玉米、小麦等单子叶植物。2. The OsNPSN11 gene of the present invention comes from rice and has optimized codons suitable for the expression of monocotyledonous plants such as rice. Its genetically engineered recipient plants are more suitable for rice, corn except for dicotyledonous plants, such as soybeans, cotton, tobacco, etc. , wheat and other monocotyledonous plants.
3、对获得的转基因植株进行PCR,Southern杂交以及RT-PCR验证后进行水稻的抗病性评价。将生长至3-4叶期的转基因T1代植株进行稻瘟病菌孢子接种处理,7天后调查植株的平均病级数为2.5级,发病叶片平均病斑数目为4.25个及病斑平均长度为0.58mm,而对照植株的平均病级数为7级以及发病叶片平均病斑数目为44个及病斑平均长度为5.00mm,结果表明,转基因植株与对照相比表现出对稻瘟病菌的明显抗性。4、利用本发明OsNPSN11基因作为目的基因构建植物表达载体,其中可用任何一种启动子例如花椰菜花叶病毒(CAMV)35S启动子、Ubiquitin启动子或其它启动子,该表达载体中必要时可包括增强子,不论是转录增强子或翻译增强子。为了简化转化细胞的鉴定可使用选择性标记包括具有抗生素抗性的酶,也可利用颜色变化(例如B-葡糖醛酸糖苷酶GUS)或发光(例如荧光素酶)来识别的化合物的酶类,也可用无标记选择。所用的表达载体可使用Ti质粒,Ri质粒,植物病毒载体等。转化方法可用经农杆菌介导法、基因枪法、花粉管通道法或其它方法转化植物。3. Perform PCR, Southern hybridization and RT-PCR verification on the obtained transgenic plants to evaluate the disease resistance of rice. The transgenic T1 generation plants grown to the 3-4 leaf stage were inoculated with the blast fungus spores. After 7 days, the average disease grade of the investigated plants was 2.5, the average number of diseased spots on the diseased leaves was 4.25, and the average length of the diseased spots was 0.58. mm, while the average disease grade of the control plants was 7 and the average number of diseased spots on the diseased leaves was 44 and the average length of the diseased spots was 5.00mm. The results showed that the transgenic plants showed obvious resistance to blast fungus compared with the control. sex. 4. Utilize the OsNPSN11 gene of the present invention as the target gene to construct a plant expression vector, wherein any promoter such as the cauliflower mosaic virus (CAMV) 35S promoter, Ubiquitin promoter or other promoters can be used, and the expression vector can include if necessary An enhancer, whether a transcriptional enhancer or a translational enhancer. To simplify the identification of transformed cells selectable markers can be used including enzymes that are resistant to antibiotics, enzymes that can also recognize compounds by color change (e.g. B-glucuronidase GUS) or luminescence (e.g. luciferase) Classes can also be selected with no markers. As the expression vector used, Ti plasmid, Ri plasmid, plant virus vector and the like can be used. Transformation methods Plants can be transformed by Agrobacterium-mediated method, particle gun method, pollen tube passage method or other methods.
具体实施方式Detailed ways
实施例1Example 1
选用水稻品种“黑壳子粳”(为太湖流域粳稻地方品种,为抗稻瘟病菌品种),待水稻幼苗长至3-4叶期后,用稻瘟病菌孢子进行接种处理,24小时后立即取叶片液氮冷冻,保存于-80℃冰箱。取部分叶片,用研钵研碎,转移入盛有Trizol裂解液的1.5mLEP管(TRIzol Reagents,购自Invitrogen,USA),充分振荡后,抽提总RNA,电泳鉴定总RNA质量。Select the rice variety "Heikezijaponica" (a local japonica rice variety in the Taihu Lake Basin, and a variety resistant to blast fungus). After the rice seedlings grow to the 3-4 leaf stage, inoculate with blast fungus spores, and immediately after 24 hours The leaves were frozen in liquid nitrogen and stored in a -80°C refrigerator. Part of the leaves were taken, crushed with a mortar, and transferred into a 1.5mLEP tube filled with Trizol lysate (TRIzol Reagents, purchased from Invitrogen, USA). After sufficient shaking, total RNA was extracted, and the quality of total RNA was identified by electrophoresis.
以拟南芥基因AtNPSN11(Zheng et al.,2002zheng H,Bednarek SY,Sanderfoot AA,Alonso J,EckerJR,Raikhel NV(2002)NPSN11is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE.PlantPhysiol 129:530-539)序列为探针,搜索水稻基因组序列和EST序列数据库,拼接得到880bp水稻SNARE蛋白基因OsNPSN11的全长序列,并设计两端引物(P1:5-TGCITITGGTTGTTGTGATCC-3,P2:5-CTGCTCTTGGTTGATITGTTC-3。)以总RNA反转录合成的cDNA第一链为模板用高保真Pfu酶(购自Roche)进行PCR扩增,PCR程序如下:94℃预变性5分钟,94℃变性45s,56℃复性1min,72℃延伸1.5min,35个循环后,72℃延伸5min,最后Tag酶(购自鼎国公司,北京)72℃保温10min末端加A后克隆至pGEM-T载体(购自Promega),委托上海生工公司测序获得水稻SNARE蛋白基因OsNPSN11的cDNA序列。Taking the Arabidopsis gene AtNPSN11 (Zheng et al., 2002zheng H, Bednarek SY, Sanderfoot AA, Alonso J, EckerJR, Raikhel NV (2002) NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE.Physi9: -539) sequence as a probe, searched the rice genome sequence and EST sequence database, spliced to obtain the full-length sequence of the 880bp rice SNARE protein gene OsNPSN11, and designed primers at both ends (P1: 5-TGCITITGGTTGTTGTGATCC-3, P2: 5-CTGCTCTTGGTTGATITGTTC- 3.) Use the first strand of cDNA synthesized by reverse transcription of total RNA as a template to perform PCR amplification with high-fidelity Pfu enzyme (purchased from Roche). Refolding for 1 min, 72°C extension for 1.5 min, after 35 cycles, 72°C extension for 5 min, and finally Tag enzyme (purchased from Dingguo Company, Beijing) was incubated at 72°C for 10 min, then A was added to the end and cloned into pGEM-T vector (purchased from Promega ), commissioned Shanghai Sangon Company to sequence and obtain the cDNA sequence of the rice SNARE protein gene OsNPSN11.
分析上述获得的水稻SNARE蛋白基因OsNPSN11的cDNA序列SEQ ID NO.1及其编码蛋白SEQ ID NO.2,该基因编码的蛋白序列与拟南芥AtNPSN11蛋白序列的一致性为69%,在C端都存在保守结构域Qb-SNARE结构域和跨膜结构域。Analysis of the cDNA sequence SEQ ID NO.1 of the rice SNARE protein gene OsNPSN11 obtained above and its encoded protein SEQ ID NO.2, the protein sequence encoded by the gene is 69% consistent with the protein sequence of the Arabidopsis AtNPSN11, and the C-terminal There are conserved domain Qb-SNARE domain and transmembrane domain.
实施例2Example 2
用实例1中设计的引物P1、P2进行半定量RT-PCR分析接种处理后水稻3-4叶期地上部幼苗的表达,结果表明,接种稻瘟病菌孢子2小时后OsNPSN11的表达增强,经灰度扫描分析,其mRNA表达量为对照的8倍,接种处理24h后表达有所减弱,表明OsNPSN11基因的表达与稻瘟病菌处理有关。Use primers P1 and P2 designed in Example 1 to carry out semi-quantitative RT-PCR analysis of the expression of rice seedlings at the 3-4 leaf stage after the inoculation process. The results show that the expression of OsNPSN11 is enhanced after 2 hours of inoculation with Magnaporthe grisea spores. Scanning analysis showed that the mRNA expression was 8 times that of the control, and the expression decreased after 24 hours of inoculation treatment, indicating that the expression of OsNPSN11 gene was related to the treatment of Magnaporthe grisea.
实验例3Experimental example 3
根据根据实施例1得到的OsNPSN11的全长序列(见SEQ ID NO.1),在起始密码子ATG附近设计引物P3并引入限制性内切酶位点XbaI(P3:5-ATTCTAGATGGATTTGGAGTCGGTCA-3),以实施例1中获得的扩增产物为模板,用P3和P2引物经PCR扩增后,将OsNPSN11的cDNA克隆至中间载体pGEM-T,利用引物P3引入的XbaI酶切位点和pGEM-T载体上的SalI酶切位点进一步克隆至双元表达载体pCAMBIA1301,测序鉴定确保表达载体中编码区阅读框架正确,再将其转入农杆菌,进一步转入水稻感稻瘟病菌品种“苏御糯”(太湖流域粳稻地方品种),对获得的转基因植株进行PCR,Southern杂交以及RT-PCR验证后进行水稻的抗病性评价。将生长至3-4叶期的转基因T1代植株进行稻瘟病菌孢子接种处理,7天后调查植株的平均病级数为2.5级,发病叶片平均病斑数目为4.25个及病斑平均长度为0.58mm,而对照植株的平均病级数为7级以及发病叶片平均病斑数目为44个及病斑平均长度为5.00mm,结果表明,转基因植株与对照相比表现出对稻瘟病菌的明显抗性。According to the full-length sequence of OsNPSN11 obtained according to Example 1 (see SEQ ID NO.1), primer P3 was designed near the start codon ATG and a restriction endonuclease site XbaI was introduced (P3: 5-AT TCTAGA TGGATTTGGAGTCGGTCA- 3), using the amplification product obtained in Example 1 as a template, after PCR amplification with P3 and P2 primers, the cDNA of OsNPSN11 was cloned into the intermediate vector pGEM-T, and the XbaI restriction site introduced by primer P3 and The SalI restriction site on the pGEM-T vector was further cloned into the binary expression vector pCAMBIA1301, sequenced and identified to ensure that the reading frame of the coding region in the expression vector was correct, and then it was transformed into Agrobacterium, and further transformed into a rice blast-susceptible strain of rice " Su Yunuo" (a local variety of japonica rice in the Taihu Lake Basin), the obtained transgenic plants were verified by PCR, Southern hybridization and RT-PCR to evaluate the disease resistance of rice. The transgenic T1 generation plants grown to the 3-4 leaf stage were inoculated with the blast fungus spores. After 7 days, the average disease grade of the investigated plants was 2.5, the average number of diseased spots on the diseased leaves was 4.25, and the average length of the diseased spots was 0.58. mm, while the average disease grade of the control plants was 7 and the average number of diseased spots on the diseased leaves was 44 and the average length of the diseased spots was 5.00mm. The results showed that the transgenic plants showed obvious resistance to blast fungus compared with the control. sex.
综上所述,本发明人提供的OsOSNPSN11基因是首次在水稻中分离的新基因,为水稻中首次报道,其功能与水稻抗病性相关,可作为目的基因导入植物,提高植物抗病性,以进行植物品种改良。可利用本发明OsNPSN11基因作为目的基因构建植物表达载体,其中可用任何一种启动子例如花椰菜花叶病毒(CAMV)35S启动子、Ubiquitin启动子或其它启动子,该表达载体中必要时可包括增强子,不论是转录增强子或翻译增强子。为了简化转化细胞的鉴定可使用选择性标记包括对抗生素抗性的酶,也可利用颜色变化(例如B-葡糖醛酸糖苷酶GUS)或发光(例如荧光素酶)来识别的化合物的酶类,也可用无标记选择。所用的表达载体可使用Ti质粒,Ri质粒,植物病毒载体等。转化方法可用经农杆菌介导法、基因枪法、花粉管通道法或其它方法转化植物。In summary, the OsOSNPSN11 gene provided by the inventors is a new gene isolated in rice for the first time and reported for the first time in rice. Its function is related to rice disease resistance and can be introduced into plants as a target gene to improve plant disease resistance. for plant variety improvement. The OsNPSN11 gene of the present invention can be used as the target gene to construct a plant expression vector, wherein any promoter such as cauliflower mosaic virus (CAMV) 35S promoter, Ubiquitin promoter or other promoters can be used, and the expression vector can include enhanced An enhancer, whether a transcriptional enhancer or a translational enhancer. To simplify the identification of transformed cells selectable markers can be used including enzymes that are resistant to antibiotics and compounds that can be identified by a color change (e.g. B-glucuronidase GUS) or luminescence (e.g. luciferase) Classes can also be selected with no markers. As the expression vector used, Ti plasmid, Ri plasmid, plant virus vector and the like can be used. Transformation methods Plants can be transformed by Agrobacterium-mediated method, particle gun method, pollen tube passage method or other methods.
本发明涉及的序列及记号分列如下:The sequences and symbols involved in the present invention are listed as follows:
(1)SEQ ID NO.1的信息(1) Information on SEQ ID NO.1
(i)序列特征:(i) Sequential features:
(A)长度:880bp(A) Length: 880bp
(B)类型:核苷酸(B) Type: Nucleotide
(C)链性:单链(C) chain: single chain
(D)拓扑结构:线性(D) Topology: linear
(ii)分子类型:核苷酸(ii) Molecule type: Nucleotide
(iii)序列描述:SEQ ID NO.1(iii) Sequence description: SEQ ID NO.1
(2)SEQ ID NO.2的信息(2) Information of SEQ ID NO.2
(i)序列特征:(i) Sequential features:
(A)长度:261aa(A) Length: 261aa
(B)类型:氨基酸(B) Type: amino acid
(C)链性:单链(C) chain: single chain
(D)拓扑结构:线性(D) Topology: linear
(ii)分子类型:蛋白质(ii) Molecule type: protein
(iii)序列描述:SEQ ID NO.2(iii) Sequence description: SEQ ID NO.2
序列表sequence listing
<110>南京农业大学<110> Nanjing Agricultural University
<120>水稻SNARE蛋白基因OsNPSN11及其应用<120> Rice SNARE protein gene OsNPSN11 and its application
<130>说明书<130> instruction manual
<140>00<140>00
<141>2007-03-10<141>2007-03-10
<160>5<160>5
<170>PatentIn version 3.1<170>PatentIn version 3.1
<210>SEQ ID NO.1<210>SEQ ID NO.1
<211>880<211>880
<212>DNA<212>DNA
<213>Oryza sativa(水稻)<213>Oryza sativa (rice)
<221>5’UTR<221>5'UTR
<222>(1)..(60)<222>(1)..(60)
<221>CDS<221> CDS
<222>(61)..(843)<222>(61)..(843)
<221>3’UTR<221>3'UTR
<222>(847)..(880)<222>(847)..(880)
<400>1<400>1
tgcttttggt tgttgtgatc cctgtggggc tcgggttccg gccggtgtag gggaggggag 60tgcttttggt tgttgtgatc cctgtggggc tcgggttccg gccggtgtag gggaggggag 60
atg gat ttg gag tcg gtc aac ccg gag ctc gcc gag atc gac ggc cag 108atg gat ttg gag tcg gtc aac ccg gag ctc gcc gag atc gac ggc cag 108
Met Asp Leu Glu Ser Val Asn Pro Glu Leu Ala Glu Ile Asp Gly GlnMet Asp Leu Glu Ser Val Asn Pro Glu Leu Ala Glu Ile Asp Gly Gln
1 5 10 151 5 10 15
atc ggc gac atc ctc cgc gca ttg caa aat ggg ttc cag aag ctg gat 156atc ggc gac atc ctc cgc gca ttg caa aat ggg ttc cag aag ctg gat 156
Ile Gly Asp Ile Leu Arg Ala Leu Gln Asn Gly Phe Gln Lys Leu AspIle Gly Asp Ile Leu Arg Ala Leu Gln Asn Gly Phe Gln Lys Leu Asp
20 25 3020 25 30
aag atc aag gat gcc aat cga cgg agc agg caa ctc gaa gag ctc act 204aag atc aag gat gcc aat cga cgg agc agg caa ctc gaa gag ctc act 204
Lys Ile Lys Asp Ala Asn Arg Arg Ser Arg Gln Leu Glu Glu Leu ThrLys Ile Lys Asp Ala Asn Arg Arg Ser Arg Gln Leu Glu Glu Leu Thr
35 40 4535 40 45
gat aag atg cgg gat tgc aag agg ctt atc aag gac ttt gag cga gtt 252gat aag atg cgg gat tgc aag agg ctt atc aag gac ttt gag cga gtt 252
Asp Lys Met Arg Asp Cys Lys Arg Leu Ile Lys Asp Phe Glu Arg ValAsp Lys Met Arg Asp Cys Lys Arg Leu Ile Lys Asp Phe Glu Arg Val
50 55 6050 55 60
gtc aaa gat atg gca gga agt acc gat cct gag act gct agg atg ctt 300gtc aaa gat atg gca gga agt acc gat cct gag act gct agg atg ctt 300
Val Lys Asp Met Ala Gly Ser Thr Asp Pro Glu Thr Ala Arg Met LeuVal Lys Asp Met Ala Gly Ser Thr Asp Pro Glu Thr Ala Arg Met Leu
65 70 75 8065 70 75 80
cat gat agg aaa cag tca atg atc aaa gaa ttg aac tcc tat gtt gct 348cat gat agg aaa cag tca atg atc aaa gaa ttg aac tcc tat gtt gct 348
His Asp Arg Lys Gln Ser Met Ile Lys Glu Leu Asn Ser Tyr Val AlaHis Asp Arg Lys Gln Ser Met Ile Lys Glu Leu Asn Ser Tyr Val Ala
85 90 9585 90 95
ttg aag aaa caa tat gca agt gaa aat aag cga gtt gat ctt ttt gat 396ttg aag aaa caa tat gca agt gaa aat aag cga gtt gat ctt ttt gat 396
Leu Lys Lys Gln Tyr Ala Ser Glu Asn Lys Arg Val Asp Leu Phe AspLeu Lys Lys Gln Tyr Ala Ser Glu Asn Lys Arg Val Asp Leu Phe Asp
100 105 110100 105 110
ggc cca agt gtt gaa gat ggc ttt ggt gaa gaa aat gtc ctg tta gca 444ggc cca agt gtt gaa gat ggc ttt ggt gaa gaa aat gtc ctg tta gca 444
Gly Pro Ser Val Glu Asp Gly Phe Gly Glu Glu Asn Val Leu Leu AlaGly Pro Ser Val Glu Asp Gly Phe Gly Glu Glu Asn Val Leu Leu Ala
115 120 125115 120 125
tca aat atg aca aac caa cag tta atg gat caa gga aac caa cta atg 492tca aat atg aca aac caa cag tta atg gat caa gga aac caa cta atg 492
Ser Asn Met Thr Asn Gln Gln Leu Met Asp Gln Gly Asn Gln Leu MetSer Asn Met Thr Asn Gln Gln Leu Met Asp Gln Gly Asn Gln Leu Met
130 135 140130 135 140
gat gag act gat caa gct att gca aga tct aaa cag acc gtc caa gag 540gat gag act gat caa gct att gca aga tct aaa cag acc gtc caa gag 540
Asp Glu Thr Asp Gln Ala Ile Ala Arg Ser Lys Gln Thr Val Gln GluAsp Glu Thr Asp Gln Ala Ile Ala Arg Ser Lys Gln Thr Val Gln Glu
145 150 155 160145 150 155 160
acc atc aat gta ggt aca gaa act gca gct gct ctc aaa tca cag aca 588acc atc aat gta ggt aca gaa act gca gct gct ctc aaa tca cag aca 588
Thr Ile Ash Val Gly Thr Glu Thr Ala Ala Ala Leu Lys Ser Gln ThrThr Ile Ash Val Gly Thr Glu Thr Ala Ala Ala Leu Lys Ser Gln Thr
165 170 175165 170 175
gag caa atg agc aga att gtt aat gaa ctg gat tcc att cat ttc tcc 636gag caa atg agc aga att gtt aat gaa ctg gat tcc att cat ttc tcc 636
Glu Gln Met Ser Arg Ile Val Asn Glu Leu Asp Ser Ile His Phe SerGlu Gln Met Ser Arg Ile Val Asn Glu Leu Asp Ser Ile His Phe Ser
180 185 190180 185 190
att aaa aag gca tca caa atg gtg aaa gaa att ggt agg cag gtt gca 684att aaa aag gca tca caa atg gtg aaa gaa att ggt agg cag gtt gca 684
Ile Lys Lys Ala Ser Gln Met Val Lys Glu Ile Gly Arg Gln Val AlaIle Lys Lys Ala Ser Gln Met Val Lys Glu Ile Gly Arg Gln Val Ala
195 200 205195 200 205
act gat cgc tgc atc atg gcc ttg ctt ttt ctc att gtt gct gga gtc 732act gat cgc tgc atc atg gcc ttg ctt ttt ctc att gtt gct gga gtc 732
Thr Asp Arg Cys Ile Met Ala Leu Leu Phe Leu Ile Val Ala Gly ValThr Asp Arg Cys Ile Met Ala Leu Leu Phe Leu Ile Val Ala Gly Val
210 215 220210 215 220
ata gca ata ata gtc gtt aag att gta aac cca cag aac aag act atc 780ata gca ata ata gtc gtt aag att gta aac cca cag aac aag act atc 780
Ile Ala Ile Ile Val Val Lys Ile Val Asn Pro Gln Asn Lys Thr IleIle Ala Ile Ile Val Val Lys Ile Val Asn Pro Gln Asn Lys Thr Ile
225 230 235 240225 230 235 240
cga gac att cct ggt ctc gct cca cca gtt agc aga agg cta ttg agt 828cga gac att cct ggt ctc gct cca cca gtt agc aga agg cta ttg agt 828
Arg Asp Ile Pro Gly Leu Ala Pro Pro Val Ser Arg Arg Leu Leu SerArg Asp Ile Pro Gly Leu Ala Pro Pro Val Ser Arg Arg Leu Leu Ser
245 250 255245 250 255
att gta gaa gac atc tgaacttcat acatgtgaac aaatcaacca agagcag 880att gta gaa gac atc tgaacttcat acatgtgaac aaatcaacca agagcag 880
Ile Val Glu Asp IleIle Val Glu Asp Ile
260260
<210>SEQIDNO.2<210>SEQ ID NO.2
<211>261<211>261
<212>PRT<212>PRT
<213>Oryza sativa(水稻)<213>Oryza sativa (rice)
<400>2<400>2
Met Asp Leu Glu Ser Val Asn Pro Glu Leu Ala Glu Ile Asp Gly GlnMet Asp Leu Glu Ser Val Asn Pro Glu Leu Ala Glu Ile Asp Gly Gln
1 5 10 151 5 10 15
Ile Gly Asp Ile Leu Arg Ala Leu Gln Asn Gly Phe Gln Lys Leu AspIle Gly Asp Ile Leu Arg Ala Leu Gln Asn Gly Phe Gln Lys Leu Asp
20 25 3020 25 30
Lys Ile Lys Asp Ala Asn Arg Arg Ser Arg Gln Leu Glu Glu Leu ThrLys Ile Lys Asp Ala Asn Arg Arg Ser Arg Gln Leu Glu Glu Leu Thr
35 40 4535 40 45
Asp Lys Met Arg Asp Cys Lys Arg Leu Ile Lys Asp Phe Glu Arg ValAsp Lys Met Arg Asp Cys Lys Arg Leu Ile Lys Asp Phe Glu Arg Val
50 55 6050 55 60
Val Lys Asp Met Ala Gly Ser Thr Asp Pro Glu Thr Ala Arg Met LeuVal Lys Asp Met Ala Gly Ser Thr Asp Pro Glu Thr Ala Arg Met Leu
65 70 75 8065 70 75 80
His Asp Arg Lys Gln Ser Met Ile Lys Glu Leu Asn Ser Tyr Val AlaHis Asp Arg Lys Gln Ser Met Ile Lys Glu Leu Asn Ser Tyr Val Ala
85 90 9585 90 95
Leu Lys Lys Gln Tyr Ala Ser Glu Asn Lys Arg Val Asp Leu Phe AspLeu Lys Lys Gln Tyr Ala Ser Glu Asn Lys Arg Val Asp Leu Phe Asp
100 105 110100 105 110
Gly Pro Ser Val Glu Asp Gly Phe Gly Glu Glu Asn Val Leu Leu AlaGly Pro Ser Val Glu Asp Gly Phe Gly Glu Glu Asn Val Leu Leu Ala
115 120 125115 120 125
Ser Asn Met Thr Asn Gln Gln Leu Met Asp Gln Gly Asn Gln Leu MetSer Asn Met Thr Asn Gln Gln Leu Met Asp Gln Gly Asn Gln Leu Met
130 135 140130 135 140
Asp Glu Thr Asp Gln Ala Ile Ala Arg Ser Lys Gln Thr Val Gln GluAsp Glu Thr Asp Gln Ala Ile Ala Arg Ser Lys Gln Thr Val Gln Glu
145 150 155 160145 150 155 160
Thr Ile Asn Val Gly Thr Glu Thr Ala Ala Ala Leu Lys Ser Gln ThrThr Ile Asn Val Gly Thr Glu Thr Ala Ala Ala Leu Lys Ser Gln Thr
165 170 175165 170 175
Glu Gln Met Ser Arg Ile Val Asn Glu Leu Asp Ser Ile His Phe SerGlu Gln Met Ser Arg Ile Val Asn Glu Leu Asp Ser Ile His Phe Ser
180 185 190180 185 190
Ile Lys Lys Ala Ser Gln Met Val Lys Glu Ile Gly Arg Gln Val AlaIle Lys Lys Ala Ser Gln Met Val Lys Glu Ile Gly Arg Gln Val Ala
195 200 205195 200 205
Thr Asp Arg Cys Ile Met Ala Leu Leu Phe Leu Ile Val Ala Gly ValThr Asp Arg Cys Ile Met Ala Leu Leu Phe Leu Ile Val Ala Gly Val
210 215 220210 215 220
Ile Ala Ile Ile Val Val Lys Ile Val Asn Pro Gln Asn Lys Thr IleIle Ala Ile Ile Val Val Lys Ile Val Asn Pro Gln Asn Lys Thr Ile
225 230 235 240225 230 235 240
Arg Asp Ile Pro Gly Leu Ala Pro Pro Val Ser Arg Arg Leu Leu SerArg Asp Ile Pro Gly Leu Ala Pro Pro Val Ser Arg Arg Leu Leu Ser
245 250 255245 250 255
Ile Val Glu Asp IleIle Val Glu Asp Ile
260260
<210>SEQ ID NO.3<210>SEQ ID NO.3
<211>21<211>21
<212>DNA<212>DNA
<213>人工合成<213> Synthetic
<221>引物P1<221> Primer P1
<222>(1)..(21)<222>(1)..(21)
<400>3<400>3
tgcttttggt tgttgtgatc c 21tgcttttggt tgttgtgatc c 21
<210>SEQ ID NO.4<210>SEQ ID NO.4
<211>21<211>21
<212>DNA<212>DNA
<213>人工合成<213> Synthetic
<221>引物P2<221> Primer P2
<222>(1)..(21)<222>(1)..(21)
<400>4<400>4
ctgctcttgg ttgatttgtt c 21ctgctcttgg ttgatttgtt c 21
<210>SEQ ID NO.5<210>SEQ ID NO.5
<211>26<211>26
<212>DNA<212> DNA
<213>人工合成<213> Synthetic
<221>引物P3<221> Primer P3
<222>(1)..(26)<222>(1)..(26)
<400>5<400>5
attctagatg gatttggagt cggtca 26attctagatg gatttggagt cggtca 26
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| Title |
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| Haiyan Zheng,et al..NPSN11 Is a Cell Plate-Associated SNARE Protein ThatInteracts with the Syntaxin KNOLLE.Plant Physiology129.2002,129530-539. * |
| NCBI GeneBank:AK058743.2003, |
| NCBI GeneBank:AK058743.2003,;shoshi kikuchi,et al..Collection, Mapping, and Annotation of Over 28,000cDNAClones from japonica Rice.Science301.2003,301376-379. * |
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