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CN107227380A - The primer sequence and method of a kind of synchronous detection PCV2 and PRV infection - Google Patents

The primer sequence and method of a kind of synchronous detection PCV2 and PRV infection Download PDF

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CN107227380A
CN107227380A CN201710614696.0A CN201710614696A CN107227380A CN 107227380 A CN107227380 A CN 107227380A CN 201710614696 A CN201710614696 A CN 201710614696A CN 107227380 A CN107227380 A CN 107227380A
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黄华荣
羊雪芹
李婧雅
王德全
袁秀芳
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Abstract

本发明公开了用于PCV2和PRV同步检测的两对特异性引物和复合PCR检测方法,其中两对特异性引物GC含量相当,退火温度相近,特异性强,不会产生引物二聚体,并且扩增出的PCV2和PRV片段大小适当,可在琼脂糖凝胶电泳中进行明确区分,便于直观地观察实验结果。本发明通过复合PCR各技术参数的合理设置,同步检测PCV2和PRV,操作简单、方便、可公式化,技术要求低,成本低廉,省时省力,并且保证了良好的特异性、灵敏性和稳定性,适于临床推广应用。

The invention discloses two pairs of specific primers and a composite PCR detection method for synchronous detection of PCV2 and PRV, wherein the two pairs of specific primers have equivalent GC content, similar annealing temperature, strong specificity, no primer dimer, and The amplified PCV2 and PRV fragments are of appropriate size and can be clearly distinguished in agarose gel electrophoresis, which is convenient for intuitive observation of experimental results. The present invention detects PCV2 and PRV synchronously through reasonable setting of various technical parameters of the composite PCR, which is simple, convenient, formulaizable, low in technical requirements, low in cost, time-saving and labor-saving, and ensures good specificity, sensitivity and stability , suitable for clinical application.

Description

一种同步检测PCV2和PRV感染的引物序列及方法A kind of primer sequence and method for simultaneous detection of PCV2 and PRV infection

技术领域technical field

本发明涉及生物技术领域,具体涉及一种用于同步检测PCV2和PRV混合感染的引物序列及方法。The invention relates to the field of biotechnology, in particular to a primer sequence and a method for synchronous detection of PCV2 and PRV mixed infection.

背景技术Background technique

猪圆环病毒2型(porcine circovirus type 2,PCV2)和猪伪狂犬病毒(porcinepseudorabies virus,PRV)感染是当前我国养猪生产中普遍存在且危害严重的DNA病毒病。其中,PCV2爆发时死亡率可达50%以上,因此其已成为当前我国养猪业中最重要的传染病。PRV属于疱疹病毒科α疱疹病毒亚科,其感染会引起成年妊娠母猪流产、死胎、木乃伊、新生仔猪急性死亡以及三周龄以内的仔猪表现神经症状和高死亡率;据调查目前我国规模猪场伪狂犬病的血清阳性率达70%以上,危害严重。以上2种病原在临床上较为常见,并且常常混合感染,其引发的疾病已经给养猪业造成严重的经济损失。Porcine circovirus type 2 (PCV2) and porcine pseudorabies virus (PRV) infection are widespread and serious DNA virus diseases in pig production in my country. Among them, the mortality rate of PCV2 can reach more than 50% when it breaks out, so it has become the most important infectious disease in my country's pig industry. PRV belongs to the αherpesvirus subfamily of the family Herpesviridae, and its infection can cause abortion, stillbirth, mummification, acute death of newborn piglets, and neurological symptoms and high mortality in piglets under three weeks of age in pregnant sows; The seropositive rate of pseudorabies in the field reaches more than 70%, and the harm is serious. The above two pathogens are relatively common in clinical practice, and are often co-infected, and the diseases caused by them have caused serious economic losses to the pig industry.

传统的PCV2感染和PRV感染的检测方法有病毒分离、实验动物接种和血清学试验等方法,这些方法操作繁琐、检测周期长、有的存在非特异性反应和敏感度低等缺点,已经不能满足养殖业的防病需求。随着分子生物学的发展,PCR检测方法可以快速、高效地对病原体进行检测。Traditional PCV2 infection and PRV infection detection methods include virus isolation, experimental animal inoculation, and serological tests. These methods are cumbersome to operate, have long detection cycles, and some have disadvantages such as non-specific reactions and low sensitivity, which can no longer meet the needs of breeding. industry's disease prevention needs. With the development of molecular biology, PCR detection method can quickly and efficiently detect pathogens.

聚合酶链反应(PCR)是体外酶促合成特异DNA片段的一种方法,由高温变性、低温退火(复性)及适温延伸等几步反应组成一个周期,循环进行,使目的DNA得以迅速扩增,具有特异性强、灵敏度高、操作简便、检测周期短等特点,不仅可用于基因分离、克隆和核酸序列分析等基础研究,还可用于疾病的诊断。Polymerase chain reaction (PCR) is a method of enzymatically synthesizing specific DNA fragments in vitro. It consists of several steps such as high-temperature denaturation, low-temperature annealing (renaturation), and suitable temperature extension. Amplification has the characteristics of strong specificity, high sensitivity, easy operation, and short detection cycle. It can be used not only for basic research such as gene isolation, cloning, and nucleic acid sequence analysis, but also for disease diagnosis.

常规PCR操作简单,技术要求低,但对于多种病毒混合感染需要进行多次PCR检测,进而延长了检测周期,增加了检测成本。复合PCR是指在同一PCR反应体系中加入多对引物,同时对多个目的基因进行扩增的方法;利用该方法同时检测多个目的基因省时省力省成本,但反应体系中存在的引物很容易形成复杂的引物二聚体,进而影响检测的灵敏度和准确性,因此复合PCR的成功关键在于设计引物的特异性、反应体系和程序的优化。Conventional PCR is simple to operate and has low technical requirements, but multiple PCR tests are required for multiple virus mixed infections, which in turn prolongs the detection cycle and increases the cost of detection. Multiplex PCR refers to the method of adding multiple pairs of primers to the same PCR reaction system to amplify multiple target genes at the same time; using this method to simultaneously detect multiple target genes saves time, effort and cost, but the primers in the reaction system are very large. It is easy to form complex primer-dimers, which will affect the sensitivity and accuracy of detection. Therefore, the key to the success of multiplex PCR lies in the specificity of designed primers, the optimization of reaction system and procedures.

现有技术中有通过多重RT-PCR对猪的多种病毒进行检测的方法,但其对RNA浓度、质量要求较高,检测过程中极易受到基因组DNA和RNA酶的污染,因此,其对操作人员技术要求较高,不利于广泛推广应用。此外,也存在多重荧光PCR的检测方法,但其探针所标记不同发光波长的荧光基团之间很容易互相干扰,进而影响特异性检测。In the prior art, there is a method for detecting various viruses of pigs by multiple RT-PCR, but it has high requirements for RNA concentration and quality, and is very susceptible to contamination by genomic DNA and RNase during the detection process. Operators have high technical requirements, which is not conducive to widespread application. In addition, multiplex fluorescent PCR detection methods also exist, but the probes labeled with fluorophores with different emission wavelengths are likely to interfere with each other, thereby affecting specific detection.

由此可见,对于PCV2和PRV感染进行同步检测的方法仍存在很大的发展空间,本领域技术人员亟待设计一种操作简便、技术要求低、特异性高、稳定性强、重复性好的PCV2、PRV同步检测方法。It can be seen that there is still a lot of room for development in the method for synchronous detection of PCV2 and PRV infection, and those skilled in the art urgently need to design a PCV2 method that is easy to operate, low in technical requirements, high in specificity, strong in stability, and good in repeatability. , PRV synchronous detection method.

发明内容Contents of the invention

基于现有技术的不足之处,本发明提供一种能够同时检测PCV2和PRV混合感染的方法。Based on the shortcomings of the prior art, the present invention provides a method capable of simultaneously detecting mixed infection of PCV2 and PRV.

本发明为了实现上述目的所采取的技术方案是:The technical scheme that the present invention takes in order to realize the above object is:

一种同步检测PCV2和PRV感染的引物序列,其特征在于:包括PCV2病毒引物序列和PRV病毒引物序列;其中,所述PCV2病毒引物序列包括上游引物PCV2-F1和下游引物PCV2-F2;所述PRV病毒引物序列包括上游引物PRV-F3和下游引物PRV-F4;所述PCV2-F1、PCV2-F2、PRV-F3和PRV-F4的核苷酸序列分别如序列表SEQ ID NO.1、SEQ ID NO.2、SEQ ID NO.3和SEQ ID NO.4所示。A primer sequence for simultaneous detection of PCV2 and PRV infection, characterized in that: it includes a PCV2 viral primer sequence and a PRV viral primer sequence; wherein the PCV2 viral primer sequence includes an upstream primer PCV2-F1 and a downstream primer PCV2-F2; the PRV virus primer sequence comprises upstream primer PRV-F3 and downstream primer PRV-F4; The nucleotide sequence of described PCV2-F1, PCV2-F2, PRV-F3 and PRV-F4 is as sequence table SEQ ID NO.1, SEQ ID NO.1 respectively Shown in ID NO.2, SEQ ID NO.3 and SEQ ID NO.4.

一种同步检测PCV2和PRV感染的方法,其特征在于,包括以下步骤:A method for synchronous detection of PCV2 and PRV infection, characterized in that it comprises the following steps:

(1)根据GenBank中登录的PCV2ORF2基因和PRV gH基因的核苷酸序列设计如权利要求1所示的两对特异性引物;(1) design two pairs of specific primers as shown in claim 1 according to the nucleotide sequence design of PCV2ORF2 gene and PRV gH gene registered in GenBank;

(2)使用所述两对特异性引物对待测样本进行复合PCR扩增,得到PCR产物,进行琼脂糖凝胶电泳检测;若出现470bp大小的条带,则待测样品中含有PCV2病毒;若出现298bp大小的条带,则待测样品中含有PRV病毒。(2) Use the two pairs of specific primers to carry out compound PCR amplification on the sample to be tested to obtain a PCR product, which is detected by agarose gel electrophoresis; if a band of 470bp size appears, the sample to be tested contains PCV2 virus; if If a band with a size of 298bp appears, the sample to be tested contains PRV virus.

进一步地,所述复合PCR扩增的反应体系为50.0μL,其中:10×Buffer 5.0μL、2.0mM MgCl24.0μL、200μM dNTPs 5.0μL、0.1μM PCV2-F11.0μL、0.1μM PCV2-F21.0μL、0.2μM PRV-F32.0μL、0.2μM PRV-F42.0μL、rTaq DNA polymerase 0.5μL、DNA模板2.0μL、ddH2O27.5μL。Further, the reaction system of the multiplex PCR amplification is 50.0 μL, including: 10×Buffer 5.0 μL, 2.0 mM MgCl 2 4.0 μL, 200 μM dNTPs 5.0 μL, 0.1 μM PCV2-F11.0 μL, 0.1 μM PCV2-F21. 0 μL, 0.2 μM PRV-F3 2.0 μL, 0.2 μM PRV-F4 2.0 μL, rTaq DNA polymerase 0.5 μL, DNA template 2.0 μL, ddH 2 O 27.5 μL.

进一步地,所述复合PCR扩增的反应程序为95℃5min;94℃30s,56℃30s,72℃45s,35个循环;最后72℃延伸10min。Further, the reaction program of the multiplex PCR amplification is 95°C for 5 minutes; 94°C for 30 s, 56°C for 30 s, 72°C for 45 s, 35 cycles; finally, 72°C for 10 min.

有益效果:本发明提供了用于PCV2和PRV同步检测的两对特异性引物和复合PCR检测方法。通过比对GenBank数据库中15种PCV2病毒株、18种PRV病毒株的基因共有特征及PCV2 ORF1、PRV gH基因的核苷酸序列,应用Primer Premier软件分别设计了两对特异性引物,其GC含量相当,退火温度相近,特异性强,不会产生引物二聚体,并且扩增出的PCV2和PRV片段大小适当,可在琼脂糖凝胶电泳中进行明确区分,便于直观地观察实验结果。本发明通过复合PCR各技术参数的合理设置,同步检测PCV2和PRV,操作简单、方便、可公式化,技术要求低,成本低廉,省时省力,并且保证了良好的特异性、灵敏性和稳定性,适于临床推广应用。Beneficial effects: the invention provides two pairs of specific primers and a composite PCR detection method for synchronous detection of PCV2 and PRV. By comparing the gene common characteristics of 15 PCV2 virus strains and 18 PRV virus strains in the GenBank database and the nucleotide sequences of PCV2 ORF1 and PRV gH genes, two pairs of specific primers were designed using Primer Premier software. Relatively, the annealing temperature is similar, the specificity is strong, and primer dimers will not be generated, and the amplified PCV2 and PRV fragments are of appropriate size, which can be clearly distinguished in agarose gel electrophoresis, which is convenient for visually observing the experimental results. The present invention detects PCV2 and PRV synchronously through reasonable setting of various technical parameters of the composite PCR, which is simple, convenient, formulaizable, low in technical requirements, low in cost, time-saving and labor-saving, and ensures good specificity, sensitivity and stability , suitable for clinical application.

附图说明Description of drawings

图1所示为本发明复合PCR扩增试验结果;图中M为pUC19 DNA/MspΙ Marker,1为PCV2 DNA扩增产物;2为PRV DNA扩增产物;PCV2 DNA与PRV DNA混合模板的扩增产物。Fig. 1 shows composite PCR amplification test result of the present invention; Among the figure, M is pUC19 DNA/Msp1 Marker, and 1 is PCV2 DNA amplification product; 2 is PRV DNA amplification product; The amplification of PCV2 DNA and PRV DNA mixed template product.

图2所示为本发明复合PCR的特异性试验结果;图中M为pUC19 DNA/MspΙ Marker,1为PCV2 DNA与PRV DNA混合模板的扩增产物;2为PPV DNA扩增产物;3为ETEC DNA扩增产物;4为APP DNA扩增产物。Fig. 2 shows the specificity test result of compound PCR of the present invention; Among the figure, M is pUC19 DNA/Msp1 Marker, and 1 is the amplification product of PCV2 DNA and PRV DNA mixed template; 2 is PPV DNA amplification product; 3 is ETEC DNA amplification product; 4 is APP DNA amplification product.

图3所示为本发明复合PCR的敏感性试验结果;图中M为pUC19 DNA/MspΙ Marker,1-8为PCV2 DNA与PRV DNA混合模板10-1-10-8稀释倍数下扩增产物。Fig. 3 shows the sensitivity test result of the composite PCR of the present invention; M in the figure is pUC19 DNA/ Msp1 Marker, 1-8 is the amplified product under 10-1-10-8 dilution factor of PCV2 DNA and PRV DNA mixed template.

具体实施方式detailed description

下面结合实施例对本发明进行进一步详述:Below in conjunction with embodiment the present invention is further described in detail:

实施例1Example 1

(1)引物的设计与合成(1) Design and synthesis of primers

通过比对GenBank数据库中15种PCV2病毒株、18种PRV病毒株的基因共有特征及PCV2 ORF1(SEQ ID NO.5)、PRV gH(SEQ ID NO.6)基因的核苷酸序列,应用Primer Premier软件分别设计了两对特异性引物,包括PCV2病毒引物和PRV病毒引物。By comparing the gene common features of 15 PCV2 virus strains and 18 PRV virus strains in the GenBank database and the nucleotide sequences of PCV2 ORF1 (SEQ ID NO.5) and PRV gH (SEQ ID NO.6) genes, Primer Premier software designed two pairs of specific primers, including PCV2 virus primers and PRV virus primers.

其中,PCV2病毒引物包括上游引物PCV2-F1和下游引物PCV2-F2;PRV病毒引物包括上游引物PRV-F3和下游引物PRV-F4;PCV2-F1、PCV2-F2、PRV-F3和PRV-F4的核苷酸序列分别如表1所示。引物由上海生工生物工程有限公司合成,预计扩增产物大小分别为470bp和298bp。Wherein, PCV2 virus primer comprises upstream primer PCV2-F1 and downstream primer PCV2-F2; PRV virus primer comprises upstream primer PRV-F3 and downstream primer PRV-F4; PCV2-F1, PCV2-F2, PRV-F3 and PRV-F4 The nucleotide sequences are shown in Table 1, respectively. The primers were synthesized by Shanghai Sangon Bioengineering Co., Ltd., and the sizes of the amplified products are expected to be 470bp and 298bp, respectively.

表1Table 1

(2)病毒基因组DNA的提取(2) Extraction of viral genomic DNA

分别取PCV2、PRV阳性病料各0.1克,置于Eppendorf管中,加入TE缓冲液1ml,用捻磨棒捻成匀浆,-70℃冻融三次,离心取上清0.2ml,再用病毒DNA提取试剂盒提取病毒DNA,最后洗脱于50μl TE缓冲液中,于-20℃保存。Take 0.1 g of PCV2 and PRV-positive disease materials respectively, put them in Eppendorf tubes, add 1 ml of TE buffer solution, twist them into a homogenate with a twister, freeze and thaw three times at -70 ° C, centrifuge to get 0.2 ml of the supernatant, and then use the virus Viral DNA was extracted with the DNA extraction kit, and finally eluted in 50 μl TE buffer and stored at -20°C.

(3)复合PCR检测;(3) Composite PCR detection;

以PCV2DNA或PRV DNA或PCV2DNA与PRV DNA 1:1混合作为DNA模板,进行复合PCR扩增,复合PCR扩增的反应体系为50.0μL,其中:10×Buffer 5.0μL、2.0mM MgCl24.0μL、200μMdNTPs 5.0μL、0.1μM PCV2-F11.0μL、0.1μM PCV2-F21.0μL、0.2μM PRV-F32.0μL、0.2μMPRV-F42.0μL、rTaq DNA polymerase 0.5μL、DNA模板2.0μL、ddH2O 27.5μL。Use PCV2DNA or PRV DNA or a 1:1 mixture of PCV2DNA and PRV DNA as a DNA template for multiplex PCR amplification. The reaction system for multiplex PCR amplification is 50.0μL, including: 10×Buffer 5.0μL, 2.0mM MgCl 2 4.0μL, 200 μM dNTPs 5.0 μL, 0.1 μM PCV2-F11.0 μL, 0.1 μM PCV2-F2 1.0 μL, 0.2 μM PRV-F3 2.0 μL, 0.2 μM PRV-F4 2.0 μL, rTaq DNA polymerase 0.5 μL, DNA template 2.0 μL, ddH 2 O 27.5 μL.

复合PCR扩增的反应程序为95℃5min;94℃30s,56℃30s,72℃45s,35个循环;最后72℃延伸10min,4℃保存备用。The reaction program of the multiplex PCR amplification was 95°C for 5min; 94°C for 30s, 56°C for 30s, 72°C for 45s, 35 cycles; finally, 72°C for 10min, and stored at 4°C for later use.

反应结束后,对PCR扩增产物进行琼脂糖凝胶电泳检测,检测结果如图1所示。1号泳道中扩增出一条清晰的目的条带,约470bp,与预期大小相当;将PCR产物纯化回收后,连接到pGEM-T载体中克隆、转化、测序,序列分析表明,所克隆的目的DNA片段大小为470bp,为预期扩增的目的DNA片段,证明样品中含有PCV2。After the reaction, the PCR amplification products were detected by agarose gel electrophoresis, and the detection results are shown in FIG. 1 . A clear target band was amplified in lane 1, about 470bp, which was equivalent to the expected size; after the PCR product was purified and recovered, it was connected to the pGEM-T vector for cloning, transformation, and sequencing. Sequence analysis showed that the cloned target band The size of the DNA fragment is 470bp, which is the target DNA fragment expected to be amplified, which proves that the sample contains PCV2.

2号泳道中扩增出一条清晰的目的条带,约298bp,与预期大小相当;将PCR产物纯化回收后,连接到pGEM-T载体中克隆、转化、测序,序列分析表明,所克隆的目的DNA片段大小为298bp,为预期扩增的目的DNA片段,证明待测样品中含有PRV。A clear target band was amplified in lane 2, about 298bp, which was equivalent to the expected size; after the PCR product was purified and recovered, it was connected to the pGEM-T vector for cloning, transformation, and sequencing. Sequence analysis showed that the cloned target band The size of the DNA fragment is 298bp, which is the target DNA fragment expected to be amplified, which proves that the test sample contains PRV.

3号泳道中同时扩增出两条清晰的目的条带,分别约为470bp和298bp,与预期大小相当;将PCR产物纯化回收后,连接到pGEM-T载体中克隆、转化、测序,序列分析表明,所克隆的目的DNA片段大小分别为470bp和298bp,为预期扩增的目的DNA片段,证明待测样品中同时含有PCV2和PRV。Two clear target bands were simultaneously amplified in lane 3, about 470bp and 298bp respectively, which were equivalent to the expected size; after the PCR product was purified and recovered, it was connected to the pGEM-T vector for cloning, transformation, sequencing, and sequence analysis It shows that the sizes of the cloned target DNA fragments are 470bp and 298bp respectively, which are the target DNA fragments expected to be amplified, which proves that the samples to be tested contain both PCV2 and PRV.

由上可知,本发明复合PCR两对特异性引物GC含量相当,引物间交叉反应弱,退火温度均在56℃左右,均可扩增出预期目的片段,特异性强;扩增出的PCV2和PRV片段大小适当,可在琼脂糖凝胶电泳中进行明确区分,便于直观地观察实验结果;MgCl2、dNTPs、rTaqDNApolymerase及引物浓度均是综合考虑扩增效率、灵敏度、特异性、稳定性等众多因素设计的,可有效检出PCV2和PRV。It can be seen from the above that the GC content of the two pairs of specific primers for the composite PCR of the present invention is equivalent, the cross-reaction between the primers is weak, and the annealing temperature is about 56 ° C, and the expected target fragment can be amplified with strong specificity; the amplified PCV2 and The size of PRV fragments is appropriate, and can be clearly distinguished in agarose gel electrophoresis, which is convenient for visually observing the experimental results; MgCl 2 , dNTPs, rTaqDNApolymerase and primer concentrations are all comprehensively considered in terms of amplification efficiency, sensitivity, specificity, stability, etc. Factor design, can effectively detect PCV2 and PRV.

实施例2Example 2

用病毒基因组DNA试剂盒分别提取猪细小病毒(PPV)、猪大肠杆菌(ETEC)、猪胸膜肺炎放线杆菌(APP)基因组DNA,应用实施例1中所述的复合PCR引物及方法进行扩增、电泳,以检测复合PCR的特异性。Extract respectively porcine parvovirus (PPV), porcine escherichia coli (ETEC), porcine Actinobacillus pleuropneumoniae (APP) genomic DNA with viral genome DNA kit, and use the composite PCR primers and methods described in Example 1 to amplify , Electrophoresis to detect the specificity of the multiplex PCR.

检测结果如图2所示,PCV2与PRV的混合DNA能扩增出特异性片段,而PPV、ETEC、APP均未扩增出片段,由此证实了复合PCR扩增的特异性。The detection results are shown in Figure 2. The mixed DNA of PCV2 and PRV can amplify specific fragments, while PPV, ETEC, and APP do not amplify fragments, thus confirming the specificity of multiplex PCR amplification.

实施例3Example 3

用紫外分光光度计测定PCV2DNA和PRV DNA混合模板的浓度,混合DNA模板浓度约为1μg/μL,用TE缓冲液将混合模板作1:10系列稀释,每个稀释度取2μl作为模板,应用实施例1中所述的复合PCR引物及方法进行复合PCR扩增,电泳,以检测复合PCR的敏感性。Use an ultraviolet spectrophotometer to measure the concentration of the mixed template of PCV2DNA and PRV DNA. The concentration of the mixed DNA template is about 1 μg/μL. The mixed template is diluted 1:10 with TE buffer, and 2 μl of each dilution is used as a template. Compound PCR primers and methods described in Example 1 were used for compound PCR amplification and electrophoresis to detect the sensitivity of compound PCR.

检测结果如图3所示,10-3稀释倍数时仍能扩增出470bp和298bp两条带,10-5稀释时仅能扩增出470bp一条带。说明复合PCR能检测到1ng的PRV和0.01ng的PCV2。The test results are shown in Figure 3. Two bands of 470bp and 298bp can still be amplified when the dilution is 10 -3 , and only one band of 470bp can be amplified when the dilution is 10 -5 . It shows that composite PCR can detect 1ng of PRV and 0.01ng of PCV2.

实施例4Example 4

将PCV2和PRV阳性病料于-70℃保存;两对特异性引物混合,酶试剂、MgCl2及dNTPs混合,于-20℃保存。每隔1个月,将-70℃保存的PCV2和PRV阳性病料重新提取DNA,取出-20℃保存的复合PCR反应体系的各种混合试剂进行PCR扩增,共检测3个月,以验证复合PCR的稳定性。Store PCV2 and PRV positive disease materials at -70°C; mix two pairs of specific primers, mix enzyme reagents, MgCl 2 and dNTPs, and store at -20°C. Every one month, re-extract DNA from PCV2 and PRV-positive disease materials stored at -70°C, take out various mixed reagents of the compound PCR reaction system stored at -20°C for PCR amplification, and test for a total of 3 months to verify Stability of multiplex PCR.

3个月的检测结果显示:每次均能扩增出预期目的片段,且眼观浓度相当,证明了复合PCR反应体系的稳定性。The test results of 3 months showed that the expected target fragments could be amplified every time, and the visual concentration was equivalent, which proved the stability of the multiplex PCR reaction system.

实施例5Example 5

对浙江省不同地区的73份临床疑似病料进行检测,结果表明该方法不仅大大节约检测时间而且消耗试剂少,降低污染机会,具有很好的实际应用价值,适于推广应用。检测中PCV2的阳性检出率高,达到57.5%,该阳性检出率与PCV2的实际感染率符合程度较高;另外,PCV2与PRV混合感染阳性检出率为6.8%,与实际的混合感染率相符;由此可见,利于本发明可有效筛选出猪群中的感染个体,进而及时防止病毒感染的扩散,提高PCV2与PRV的病毒防控力度。The detection of 73 clinical suspected disease materials in different regions of Zhejiang Province showed that this method not only greatly saves detection time but also consumes less reagents and reduces the chance of pollution. It has good practical application value and is suitable for popularization and application. The positive detection rate of PCV2 in the test is high, reaching 57.5%, which is consistent with the actual infection rate of PCV2; in addition, the positive detection rate of PCV2 and PRV mixed infection is 6.8%, which is consistent with the actual mixed infection rate. Thus, it can be seen that the present invention can effectively screen out infected individuals in pig herds, thereby preventing the spread of virus infection in time, and improving the virus prevention and control of PCV2 and PRV.

以上仅是本发明的优选实施方式,本发明的保护范围并不仅限制于本文所示的实施例,凡属于本发明思路下的技术方案均属于本发明的保护范围。应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明原理前提下的若干修改和润饰也应视为本发明的保护范围。The above are only preferred embodiments of the present invention, and the scope of protection of the present invention is not limited to the examples shown herein, and all technical solutions under the idea of the present invention belong to the scope of protection of the present invention. It should be pointed out that for those skilled in the art, some modifications and embellishments without departing from the principle of the present invention should also be regarded as the protection scope of the present invention.

SEQUENCE LISTINGSEQUENCE LISTING

<110> 杭州师范大学<110> Hangzhou Normal University

<120> 一种同步检测PCV2和PRV感染的引物序列及方法<120> A Primer Sequence and Method for Simultaneously Detecting PCV2 and PRV Infection

<160> 6<160> 6

<170> PatentIn version 3.3<170> PatentIn version 3.3

<210> 1<210> 1

<211> 19<211> 19

<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

<400> 1<400> 1

tccgcgggct ggctgaact 19tccgcggggct ggctgaact 19

<210> 2<210> 2

<211> 22<211> 22

<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

<400> 2<400> 2

gggggaaagg gtgacgaact gg 22gggggaaagg gtgacgaact gg 22

<210> 3<210> 3

<211> 18<211> 18

<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

<400> 3<400> 3

tcctgtacgc cctattca 18tcctgtacgc cctattca 18

<210> 4<210> 4

<211> 20<211> 20

<212> DNA<212>DNA

<213> 人工序列<213> Artificial sequence

<400> 4<400> 4

catccctggc tctagttatg 20catccctggc tctagttatg 20

<210> 5<210> 5

<211> 945<211> 945

<212> DNA<212>DNA

<213> 猪圆环病毒2型<213> Porcine circovirus type 2

<400> 5<400> 5

atgcccagca agaagaatgg aagaagcgga ccccaaccac acaaaaggtg ggtgttcacg 60atgcccagca agaagaatgg aagaagcgga ccccaaccac acaaaaggtg ggtgttcacg 60

ctgaataatc cttccgaaga cgagcgcaag aaaatacggg agcttccaat ctcccttttt 120ctgaataatc cttccgaaga cgagcgcaag aaaatacggg agcttccaat ctcccttttt 120

gattatttta ttgttggcga ggagggtaat gaggaaggac gaacacccca cctccagggg 180gattatttta ttgttggcga ggagggtaat gaggaaggac gaacaccccca cctccagggg 180

ttcgctaatt ttgtgaagaa gcaaacattt aataaagtga aatggtattt cggtgcccgc 240ttcgctaatt ttgtgaagaa gcaaacattt aataaagtga aatggtattt cggtgcccgc 240

tgccacatcg agaaagcgaa aggaactgat cagcagaata aagaatactg cagtaaagaa 300tgccacatcg agaaagcgaa aggaactgat cagcagaata aagaatactg cagtaaagaa 300

ggcaacttac tgatggaatg tggagctcct agatctcaag gacaacggag tgacctgtct 360ggcaacttac tgatggaatg tggagctcct agatctcaag gacaacggag tgacctgtct 360

actgctgtga gtaccttgtt ggagagcggg agtctggtga ccgttgcaga gcagcaccct 420actgctgtga gtaccttgtt ggagagcggg agtctggtga ccgttgcaga gcagcaccct 420

gtaacgtttg tcagaaattt ccgcgggctg gctgaacttt tgaaagtgag cgggaaaatg 480gtaacgtttg tcagaaattt ccgcgggctg gctgaacttt tgaaagtgag cgggaaaatg 480

cagaagcgtg attggaagac caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa 540cagaagcgtg attggaagac caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa 540

agcaaatggg ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac 600agcaaatggg ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac 600

aagtggtggg acggttacca tggtgaagaa gtggttgtta ttgatgactt ttatggctgg 660aagtggtggg acggttacca tggtgaagaa gtggttgtta ttgatgactt ttatggctgg 660

ctgccgtggg atgatctact gagattgtgt gatcgatatc cattgactgt agagactaaa 720ctgccgtggg atgatctact gagattgtgt gatcgatatc cattgactgt agagactaaa 720

ggtggaactg tacctttttt ggcccgcagt attctgatta ccagcaatca gaccccgttg 780ggtggaactg tacctttttt ggcccgcagt attctgatta ccagcaatca gaccccgttg 780

gaatggtact cctcaactgc tgtcccagct gtagaagctc tctatcggag gattacttcc 840gaatggtact cctcaactgc tgtcccagct gtagaagctc tctatcggag gattacttcc 840

ttggtatttt ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc 900ttggtatttt ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc 900

ctttcccccc catgccctga atttccatat gaaataaatt actga 945ctttcccccc catgccctga atttccatat gaaataaatt actga 945

<210> 6<210> 6

<211> 3422<211> 3422

<212> DNA<212>DNA

<213> 猪伪狂犬病毒<213> Porcine pseudorabies virus

<400> 6<400> 6

ggggccctcg ccgcgcgcct gcgccgcggc cgtggcggcg caggcgcgcg gcatggaggt 60ggggccctcg ccgcgcgcct gcgccgcggc cgtggcggcg caggcgcgcg gcatggaggt 60

gacggagtcc gcgtacggcg accacatccg gcagtgcgtg tgcgccttca cgtcggagat 120gacggagtcc gcgtacggcg accacatccg gcagtgcgtg tgcgccttca cgtcggagat 120

gggggtgtga ccctcgcccc tcccacccgc gccgcggccg gatggagacc gcgacggagg 180gggggtgtga ccctcgcccc tcccacccgc gccgcggccg gatggagacc gcgacggagg 180

caacgacgac ggcgtgggag ggggctcggg gcgcgtataa agccatgtgt atgtcatccc 240caacgacgac ggcgtggggag ggggctcggg gcgcgtataa agccatgtgt atgtcatccc 240

aataaagttt gccgtgcccg tcaccatgcc cgcgtcgtcc gtgcgcctcc cgctgcgcct 300aataaagttt gccgtgcccg tcaccatgcc cgcgtcgtcc gtgcgcctcc cgctgcgcct 300

cctgaccctc gcgggcctcc tggccctcgc gggggccgcc gccctcgccc gcggcgcgcc 360cctgaccctc gcgggcctcc tggccctcgc gggggccgcc gccctcgccc gcggcgcgcc 360

gcagggtggg ccgccctcgc cgcagggggg tcccgcgccc accgcggcgc ccgcgcgcgg 420gcagggtggg ccgccctcgc cgcagggggg tcccgcgccc accgcggcgc ccgcgcgcgg 420

gcccaccctg ttcgtcctgg tcggcgacgg ctccgcgggg ttcgtcttcc agctcggcgg 480gcccaccctg ttcgtcctgg tcggcgacgg ctccgcgggg ttcgtcttcc agctcggcgg 480

gctgggggcg ctcaacgaca cgcgcatccg cgggcacctg ctcggccggt acctcgtctc 540gctgggggcg ctcaacgaca cgcgcatccg cgggcacctg ctcggccggt acctcgtctc 540

gtaccaggtg gtgcccccgc ccgtctccgc gtggtacttt gtgcagcgcc cgcgcgagcg 600gtaccaggtg gtgcccccgc ccgtctccgc gtggtacttt gtgcagcgcc cgcgcgagcg 600

cccgcgcctc tcggggccgc cctcgggcgc ggagctcgtg gccttcgacg cgcccggcgt 660cccgcgcctc tcggggccgc cctcgggcgc ggagctcgtg gccttcgacg cgcccggcgt 660

ccggcgcacg tacaccacgg cggcggtgtg gcccgcggag gtggccgtcc tcgcggacgc 720ccggcgcacg tacaccacgg cggcggtgtg gcccgcggag gtggccgtcc tcgcggacgc 720

ggaggcgcgc tgccccgcgg ccgtcttcaa cgtgacgctg ggcgaggcct tcctcggcct 780ggaggcgcgc tgccccgcgg ccgtcttcaa cgtgacgctg ggcgaggcct tcctcggcct 780

gcgcgtcgcg ctgcgctcct tcctgccgct ggaggtcatc atctccgccg agcggatgcg 840gcgcgtcgcg ctgcgctcct tcctgccgct ggaggtcatc atctccgccg agcggatgcg 840

catgatcgcg cccccggcgc tcggcgcggg cctggagccg ccgggcccgc ccgcgggccg 900catgatcgcg cccccggcgc tcggcgcggg cctggagccg ccgggcccgc ccgcgggccg 900

cttccacgtg tacacgctcg gcttcctctc cgacggggcc atgcaccaga cgatgcgcga 960cttccacgtg tacacgctcg gcttcctctc cgacggggcc atgcaccaga cgatgcgcga 960

cgtggccgcc tacgtgcacg agagcgacga ctacctcgcc cagctgtcgg cggcgcacgc 1020cgtggccgcc tacgtgcacg agagcgacga ctacctcgcc cagctgtcgg cggcgcacgc 1020

ggccgccctg gccgccgtgg tgcagcccgg gccgtactac ttttaccgcg cggcggtgcg 1080ggccgccctg gccgccgtgg tgcagcccgg gccgtactac ttttaccgcg cggcggtgcg 1080

cctcggcgtg gccgccttcg tcttctccga ggcggcgcgc cgcgaccggc gcgcctcggc 1140cctcggcgtg gccgccttcg tcttctccga ggcggcgcgc cgcgaccggc gcgcctcggc 1140

gccggcgctc ctgcgcgtcg agagcgacgc gcgcctgctc tcgcgcctgc tcatgcgcgc 1200gccggcgctc ctgcgcgtcg agagcgacgc gcgcctgctc tcgcgcctgc tcatgcgcgc 1200

ggccggctgc cccgcgggct tcgccgggct cttcgacggg cgcgccgagc gcgtcccggt 1260ggccggctgc cccgcgggct tcgccgggct cttcgacggg cgcgccgagc gcgtcccggt 1260

ggcgcccgcg gaccagctcc gcgccgcctg gaccttcggc gaggacccgg cgccccggct 1320ggcgcccgcg gaccagctcc gcgccgcctg gaccttcggc gaggacccgg cgccccggct 1320

ggacctcgcg cgggcgaccg tcgccgaggc gtaccgccgc tccgtgcggg ggaagccctt 1380ggacctcgcg cgggcgaccg tcgccgaggc gtaccgccgc tccgtgcggg ggaagccctt 1380

cgaccagcag gcgctcttct tcgccgtcgc cctgctgctg cgcgccggcg gccccggcga 1440cgaccagcag gcgctcttct tcgccgtcgc cctgctgctg cgcgccggcg gccccggcga 1440

cgcgcgcgag accctgctcc gcaccacggc catgtgcacc gcggagcgcg ccgccgcggc 1500cgcgcgcgag accctgctcc gcaccacggc catgtgcacc gcggagcgcg ccgccgcggc 1500

cgccgagctc acgcgggccg cgctctcgcc ggcggccgcg tggaacgagc ccttcagcct 1560cgccgagctc acgcgggccg cgctctcgcc ggcggccgcg tggaacgagc ccttcagcct 1560

gctcgacgtc ctctcgccgt gcgccgtctc gctgcgccgc gacctcggcg gggacgccac 1620gctcgacgtc ctctcgccgt gcgccgtctc gctgcgccgc gacctcggcg gggacgccac 1620

cctggccaac ctgggcgccg cggcgcggct cgcgctggcg cccgccgggg ccccgggcgc 1680cctggccaac ctgggcgccg cggcgcggct cgcgctggcg cccgccgggg ccccgggcgc 1680

ggcggcggcg acggacgagg gggcggagga ggaggaggag gaccccgtcg cgcgcgccgc 1740ggcggcggcg acggacgagg gggcggagga ggaggaggag gaccccgtcg cgcgcgccgc 1740

gcccgagatc cccgccgagg cgctgctcgc cctgcccctg cgcgggggcg ccagcttcgt 1800gcccgagatc cccgccgagg cgctgctcgc cctgcccctg cgcgggggcg ccagcttcgt 1800

gttcacgcgc cggcgcccgg actgcggccc ggcgtacacg ctcggcggcg tggacatcgc 1860gttcacgcgc cggcgcccgg actgcggccc ggcgtacacg ctcggcggcg tggacatcgc 1860

caacccgctc gtgctcgccc tcgtcagcaa cgacagcgcc gcgtgcgact acacggaccg 1920caacccgctc gtgctcgccc tcgtcagcaa cgacagcgcc gcgtgcgact acacggaccg 1920

catgcccgag tcccagcacc tgccggcgac ggacaacccg tccgtgtgcg tgtactgcga 1980catgcccgag tcccagcacc tgccggcgac ggacaacccg tccgtgtgcg tgtactgcga 1980

ctgcgtgttc gtgcgctact cctccgcggg cacgatcctg gagaccgtcc tcatcgagtc 2040ctgcgtgttc gtgcgctact cctccgcggg cacgatcctg gagaccgtcc tcatcgagtc 2040

caaggacatg gaggagcagc tcatggccgg cgccaactcc accatcccca gcttcaaccc 2100caaggacatg gaggagcagc tcatggccgg cgccaactcc accatcccca gcttcaaccc 2100

gacgctgcac ggcggcgacg tcaaggccct gatgctcttc cccaacggca ccgtggtcga 2160gacgctgcac ggcggcgacg tcaaggccct gatgctcttc cccaacggca ccgtggtcga 2160

cctgctgtcg ttcacgtcga cgcggctcgc gcccgtgtcc ccggcctacg tggtggcctc 2220cctgctgtcg ttcacgtcga cgcggctcgc gcccgtgtcc ccggcctacg tggtggcctc 2220

cgtcgtgggg gcggccatca ccgtggggat cctgtacgcc ctattcaaga tgctctgcag 2280cgtcgtgggg gcggccatca ccgtggggat cctgtacgcc ctattcaaga tgctctgcag 2280

cttctcctcc gagggctatt ctcggttaat aaacgccagg tcgtgaggcc cgcgccgggc 2340cttctcctcc gagggctatt ctcggttaat aaacgccagg tcgtgaggcc cgcgccgggc 2340

cgcgaaccca gactctctgc gtgcgcgtgt ttttccttgt cgggcgcggg gggagacgga 2400cgcgaaccca gactctctgc gtgcgcgtgtttttccttgt cgggcgcggg gggagacgga 2400

ggggagacgg gagggggggg gaagacggca cgggcgccgt ccgtcgggga gacggcggga 2460ggggagacgg gagggggggg gaagacggca cgggcgccgt ccgtcgggga gacggcggga 2460

tgacatcacg agagtcgggt ggaggggatg tggggagcgc catccacggg ggaaggctgc 2520tgacatcacg agagtcgggt ggaggggatg tggggagcgc catccacggg ggaaggctgc 2520

tggatgacat aactagagcc agggatgagg atcctgctgg atgacataac tagagccagg 2580tggatgacat aactagagcc agggatgagg atcctgctgg atgacataac tagagccagg 2580

gatgaggatc ccctttcccc cgttccccga gtatgcacca ctctctcccc gcacacattt 2640gatgaggatc ccctttcccc cgttccccga gtatgcacca ctctctcccc gcaacacattt 2640

cccaccgggc gcctaacgtg gattgcaccc cggtccgcgc tacccggttg tgtgtgaggc 2700cccaccgggc gcctaacgtg gattgcaccc cggtccgcgc tacccggttg tgtgtgaggc 2700

ggacggagag ccgccctcgc cccggtcccc ccaaactcct gcggatgtgt ggtccgacga 2760ggacggagag ccgccctcgc cccggtcccc ccaaactcct gcggatgtgt ggtccgacga 2760

agcctccgcg gatgtgtccg ccgtaccctc gtccccctct ctcccacagt cctccctctc 2820agcctccgcg gatgtgtccg ccgtaccctc gtccccctct ctcccacagt cctccctctc 2820

ccacagtcct ccctctccca cagtcctccc tctcccacag tcctccctct cccacagtcc 2880ccacagtcct ccctctccca cagtcctccc tctcccacag tcctccctct cccacagtcc 2880

tccctctccc acagtcctcc ctctcccaca gtcctccctc tcccacagtc ctccctctcc 2940tccctctccc acagtcctcc ctctcccaca gtcctccctc tccccacagtc ctccctctcc 2940

cacagtcctc cctctcccac agtcctccct ctcccacagt cctccctctc ccacagtcct 3000cacagtcctc cctctcccac agtcctccct ctcccacagt cctccctctc ccacagtcct 3000

ccctctccca cagtcctccc tctcccacag tcctccctcg tcccgaccgc cgaccgcact 3060ccctctccca cagtcctccc tctcccacag tcctccctcg tcccgaccgc cgaccgcact 3060

caagaacatt ttcacccgcg ctgaagaagg ggtctctaag gggtctctaa ggggtctcta 3120caagaacatt ttcacccgcg ctgaagaagg ggtctctaag gggtctctaa ggggtctcta 3120

aggggtctct aaggggtctc taaggggtct ctaaggggga ccaaagagta aagaccagag 3180aggggtctct aaggggtctc taaggggtct ctaaggggga ccaaagagta aagaccagag 3180

acgcatttta caatttcgtt gtacccgggt ttattgaaaa ctttgttcaa gagttaaagt 3240acgcatttta caatttcgtt gtacccgggt ttattgaaaa ctttgttcaa gagttaaagt 3240

gtctgccgct cgccggtgcg ccgcgccgag gccgcgatcc ggccgccgtg gaccgggggc 3300gtctgccgct cgccggtgcg ccgcgccgag gccgcgatcc ggccgccgtg gaccgggggc 3300

ccgcgggctg gattcgacgg gacggcgggt ccgagcgacg gcggtccggc ggcgtttcgg 3360ccgcgggctg gattcgacgg gacggcgggt ccgagcgacg gcggtccggc ggcgtttcgg 3360

ctcgcggtcc tcgcggcggc gacgatccgg cggtcccacg acgatcgtgg tccgggggat 3420ctcgcggtcc tcgcggcggc gacgatccgg cggtccacg acgatcgtgg tccgggggat 3420

cc 3422cc 3422

Claims (4)

1.一种同步检测PCV2和PRV感染的引物序列,其特征在于:包括PCV2病毒引物序列和PRV病毒引物序列;其中,所述PCV2病毒引物序列包括上游引物PCV2-F1和下游引物PCV2-F2;所述PRV病毒引物序列包括上游引物PRV-F3和下游引物PRV-F4;所述PCV2-F1、PCV2-F2、PRV-F3和PRV-F4的核苷酸序列分别如序列表SEQ ID NO.1、SEQ ID NO.2、SEQ ID NO.3和SEQ ID NO.4所示。1. A primer sequence for simultaneous detection of PCV2 and PRV infection, characterized in that: comprise a PCV2 viral primer sequence and a PRV viral primer sequence; wherein, said PCV2 viral primer sequence comprises upstream primer PCV2-F1 and downstream primer PCV2-F2; The PRV virus primer sequence includes upstream primer PRV-F3 and downstream primer PRV-F4; the nucleotide sequences of the PCV2-F1, PCV2-F2, PRV-F3 and PRV-F4 are respectively as shown in the sequence table SEQ ID NO.1 , SEQ ID NO.2, SEQ ID NO.3 and SEQ ID NO.4 shown. 2.一种同步检测PCV2和PRV感染的方法,其特征在于,包括以下步骤:2. a method for synchronously detecting PCV2 and PRV infection, is characterized in that, comprises the following steps: (1)根据GenBank中登录的PCV2ORF2基因和PRV gH基因的核苷酸序列设计如权利要求1所示的两对特异性引物;(1) design two pairs of specific primers as shown in claim 1 according to the nucleotide sequence design of PCV2ORF2 gene and PRV gH gene registered in GenBank; (2)使用所述两对特异性引物对待测样本进行复合PCR扩增,得到PCR产物,进行琼脂糖凝胶电泳检测;若出现470bp大小的条带,则待测样品中含有PCV2病毒;若出现298bp大小的条带,则待测样品中含有PRV病毒。(2) Use the two pairs of specific primers to carry out compound PCR amplification on the sample to be tested to obtain the PCR product, which is detected by agarose gel electrophoresis; if there is a band of 470bp size, the sample to be tested contains PCV2 virus; if If a band with a size of 298bp appears, the sample to be tested contains PRV virus. 3.根据权利要求2所述的一种同步检测PCV2和PRV感染的方法,其特征在于:所述复合PCR扩增的反应体系为50.0μL,其中:10×Buffer 5.0μL、2.0mM MgCl24.0μL、200μM dNTPs5.0μL、0.1μM PCV2-F11.0μL、0.1μM PCV2-F2 1.0μL、0.2μM PRV-F32.0μL、0.2μM PRV-F42.0μL、rTaq DNApolymerase 0.5μL、DNA模板2.0μL、ddH2O 27.5μL。3. A method for synchronous detection of PCV2 and PRV infection according to claim 2, characterized in that: the reaction system of the multiplex PCR amplification is 50.0 μL, wherein: 10×Buffer 5.0 μL, 2.0mM MgCl 4.0 μL, 200 μM dNTPs 5.0 μL, 0.1 μM PCV2-F11.0 μL, 0.1 μM PCV2-F2 1.0 μL, 0.2 μM PRV-F3 2.0 μL, 0.2 μM PRV-F4 2.0 μL, rTaq DNApolymerase 0.5 μL, DNA template 2.0 μL, ddH 2 O 27.5 μL. 4.根据权利要求2所述的一种同步检测PCV2和PRV感染的方法,其特征在于:所述复合PCR扩增的反应程序为95℃5min;94℃30s,56℃30s,72℃45s,35个循环;最后72℃延伸10min。4. a kind of method for simultaneously detecting PCV2 and PRV infection according to claim 2, is characterized in that: the reaction program of described compound PCR amplification is 95 ℃ 5min; 94 ℃ 30s, 56 ℃ 30s, 72 ℃ 45s, 35 cycles; final extension at 72°C for 10 min.
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