CN107058353B - HIV chimeric antigen, preparation method and application - Google Patents
HIV chimeric antigen, preparation method and application Download PDFInfo
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- CN107058353B CN107058353B CN201710031642.1A CN201710031642A CN107058353B CN 107058353 B CN107058353 B CN 107058353B CN 201710031642 A CN201710031642 A CN 201710031642A CN 107058353 B CN107058353 B CN 107058353B
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Abstract
本发明公开了一种HIV嵌合Gag抗原、制备方法及应用,具体公开了一种二价HIV嵌合Gag抗原,该抗原包含Gag嵌合序列1、Gag嵌合序列2及可溶性的PD1序列,同时还公开了抗原的制备方法及在预防、治疗HIV疾病中的应用及诊断HIV疾病的试剂中的应用。本发明二价HIV嵌合Gag抗原是基于中国数百株HIV‑1 B/B',C/CRF07/08_BC和CRF01_AE Gag P41序列而设计的,其包含了最保守的T细胞抗原决定表位,本发明还在基于PD1的疫苗的研究成果上设计了对应的疫苗,该疫苗具有诱导广谱HIV特异性T细胞免疫的作用。
The present invention discloses an HIV chimeric Gag antigen, a preparation method and an application, and specifically discloses a bivalent HIV chimeric Gag antigen, which comprises a Gag chimeric sequence 1, a Gag chimeric sequence 2 and a soluble PD1 sequence, and also discloses a method for preparing the antigen and its application in preventing and treating HIV diseases and in reagents for diagnosing HIV diseases. The bivalent HIV chimeric Gag antigen of the present invention is designed based on hundreds of HIV-1 B/B', C/CRF07/08_BC and CRF01_AE Gag P41 sequences in China, which contain the most conserved T cell antigen-determining epitopes. The present invention also designs a corresponding vaccine based on the research results of the PD1-based vaccine, which has the effect of inducing broad-spectrum HIV-specific T cell immunity.
Description
技术领域technical field
本发明涉及HIV抗原、制备方法及应用。具体而言,本发明涉及一种HIV嵌合Gag抗原、制备方法及应用。The present invention relates to HIV antigen, preparation method and application. Specifically, the present invention relates to an HIV chimeric Gag antigen, preparation method and application.
背景技术Background technique
在过去的30年中,I型人类免疫缺陷病毒(HIV-1)是全球现有的最具破坏性的传染病微生物之一。至2014年,HIV-1已造成近78万人感染,其中一半死于获得性免疫缺陷综合症(AIDS)。尽管终生维持治疗能够延长HIV病人生命,但所产生的经济负担及耐药性毒株的出现给病人带来苦难。正是由于以上挑战,在过去三十年付出了巨大的努力去研发有效的HIV疫苗,然而在最近的泰国RV144临床试验中,也只有31%的保护率。另外,HIV-1的遗传多样性成为了全球疫苗发展的另一个挑战。理想情况下,一个有效的疫苗应该引起宿主的免疫反应以抑制和控制感染,但迄今为止,源于自然的HIV-1序列的抗原在非人灵长类动物的研究中和临床试验中只能引发有限度的细胞免疫应答。通过计算机算法设计嵌合抗原,能够匹配和最大化融合自然的HIV-1毒株序列。多价嵌合抗原是一种能够提高针对HIV-1多样性的细胞免疫覆盖率的优化免疫原,嵌合疫苗方法成为有潜力的解决方案。然而,针对中国流行的HIV-1B/B'、C/CRF07/08_BC和CRF 01_AE亚型的嵌合免疫原设计还没有报道。For the past 30 years, human immunodeficiency virus type I (HIV-1) has been one of the most destructive infectious disease microorganisms in existence globally. By 2014, HIV-1 had infected nearly 780,000 people, half of whom died from acquired immunodeficiency syndrome (AIDS). Although life-long maintenance therapy can prolong the lives of HIV patients, the economic burden and the emergence of drug-resistant strains bring suffering to patients. It is because of the above challenges that great efforts have been made to develop an effective HIV vaccine over the past three decades, yet in the most recent clinical trial of RV144 in Thailand, the protection rate was only 31%. In addition, the genetic diversity of HIV-1 presents another challenge for global vaccine development. Ideally, an effective vaccine should elicit an immune response in the host to suppress and control infection, but so far, antigens derived from natural HIV-1 sequences have been limited in nonhuman primate research and clinical trials. Triggers a limited cellular immune response. Chimeric antigens were designed by computer algorithms to match and maximize the fusion of natural HIV-1 strain sequences. The multivalent chimeric antigen is an optimized immunogen capable of increasing cellular immune coverage against HIV-1 diversity, and the chimeric vaccine approach is a potential solution. However, the design of chimeric immunogens against HIV-1B/B', C/CRF07/08_BC and CRF01_AE subtypes circulating in China has not been reported.
发明内容SUMMARY OF THE INVENTION
本发明要解决的技术问题是提供了了一种HIV嵌合Gag抗原、制备方法及应用。The technical problem to be solved by the present invention is to provide an HIV chimeric Gag antigen, a preparation method and an application.
本发明第一方面提供了一种核酸,所述核酸的序列选自:A first aspect of the present invention provides a nucleic acid, the sequence of which is selected from:
1)包含SEQ ID NO:1和SEQ ID NO:2所示的核苷酸序列;或1) comprising the nucleotide sequences shown in SEQ ID NO: 1 and SEQ ID NO: 2; or
2)核酸的同源序列,其与SEQ ID NO:1和SEQ ID NO:2所示的核苷酸序列有至少70%-99%的同一性;或2) Homologous sequences of nucleic acids, which are at least 70%-99% identical to the nucleotide sequences shown in SEQ ID NO: 1 and SEQ ID NO: 2; or
3)核酸的变体,其与SEQ ID NO:1和SEQ ID NO:2所示的核苷酸序列相比具有至少一个核苷酸的取代、缺失和/或添加;或3) a variant of a nucleic acid having at least one nucleotide substitution, deletion and/or addition compared to the nucleotide sequences shown in SEQ ID NO: 1 and SEQ ID NO: 2; or
4)核酸的衍生物,其为1)-3)所述的核酸的序列的变体。4) A derivative of a nucleic acid, which is a variant of the sequence of the nucleic acid described in 1)-3).
在一优选例中,所述的核酸进一步包含可溶性PD1序列。In a preferred embodiment, the nucleic acid further comprises a soluble PD1 sequence.
在一优选例中,所述可溶性PD1序列为人类可溶性PD1序列。In a preferred embodiment, the soluble PD1 sequence is a human soluble PD1 sequence.
在一优选例中,所述的人类可溶性PD1序列为SEQ ID NO:6所示的核苷酸序列。In a preferred embodiment, the human soluble PD1 sequence is the nucleotide sequence shown in SEQ ID NO:6.
在一优选例中,所述的核酸序列进一步包含作为链接体的linker序列。In a preferred embodiment, the nucleic acid sequence further comprises a linker sequence as a linker.
在一优选例中,所述linker序列位于SEQ ID NO:1和SEQ ID NO:2所示的核苷酸序列之间。In a preferred embodiment, the linker sequence is located between the nucleotide sequences shown in SEQ ID NO:1 and SEQ ID NO:2.
在一优选例中,所述linker序列位于SEQ ID NO:6和SEQ ID NO:1所示的核苷酸序列之间。In a preferred embodiment, the linker sequence is located between the nucleotide sequences shown in SEQ ID NO:6 and SEQ ID NO:1.
在一优选例中,所述linker序列为SEQ ID NO:7所示的核苷酸序列。In a preferred embodiment, the linker sequence is the nucleotide sequence shown in SEQ ID NO:7.
在一优选例中,所述位于SEQ ID NO:6和SEQ ID NO:1所示的核苷酸序列之间的linker序列与SEQ ID NO:6之间含有第一酶切位点序列。In a preferred example, the linker sequence located between the nucleotide sequences shown in SEQ ID NO: 6 and SEQ ID NO: 1 and SEQ ID NO: 6 contains a first enzyme cleavage site sequence.
在一优选例中,所述第一酶切位点序列为EcoRI酶切序列。In a preferred embodiment, the first restriction enzyme cleavage site sequence is an EcoRI restriction enzyme sequence.
在一优选例中,所述的核酸序列进一步包含第二酶切位点序列。In a preferred embodiment, the nucleic acid sequence further comprises a second restriction enzyme cleavage site sequence.
在一优选例中,所述第二酶切位点序列与SEQ ID NO:6相连。In a preferred embodiment, the second restriction enzyme cleavage site sequence is linked to SEQ ID NO:6.
在一优选例中,所述第二酶切位点序列为BamHI酶切序列。In a preferred embodiment, the second restriction enzyme cleavage site sequence is a BamHI restriction enzyme sequence.
在一优选例中,所述的核酸序列进一步包含组织纤溶酶原激活蛋白表达及释放的信号肽序列和起始密码子。In a preferred embodiment, the nucleic acid sequence further comprises a signal peptide sequence and an initiation codon for tissue plasminogen activator protein expression and release.
在一优选例中,所述BamHI酶切序列依次与组织纤溶酶原激活蛋白表达及释放的信号肽序列和起始密码子相连接。In a preferred embodiment, the BamHI enzyme cleavage sequence is sequentially linked with the signal peptide sequence and the initiation codon of tissue plasminogen activator protein expression and release.
在一优选例中,所述的核酸序列进一步包含第三酶切位点序列和第四酶切位点序列。In a preferred embodiment, the nucleic acid sequence further comprises a third restriction enzyme cleavage site sequence and a fourth restriction enzyme cleavage site sequence.
在一优选例中,所述SEQ ID NO:2所示的核苷酸序列依次与终止密码子、第三酶切位点序列和第四酶切位点序列相连接。In a preferred example, the nucleotide sequence shown in SEQ ID NO: 2 is sequentially connected with a stop codon, a third restriction enzyme cleavage site sequence and a fourth restriction enzyme cleavage site sequence.
在一优选例中,所述的第三酶切位点序列和第四酶切位点序列分别为XhoI酶切序列和PmeI酶切序列。In a preferred embodiment, the third restriction enzyme cleavage site sequence and the fourth restriction restriction restriction site sequence are XhoI restriction enzyme restriction sequence and PmeI restriction restriction sequence, respectively.
在一优选例中,所述的核酸序列为SEQ ID NO:5序列。In a preferred embodiment, the nucleic acid sequence is the sequence of SEQ ID NO:5.
本发明第二方面提供了一种氨基酸,由上述核酸序列编码。The second aspect of the present invention provides an amino acid encoded by the above-mentioned nucleic acid sequence.
本发明第三方面提供了一种载体,含有上述的核酸序列。A third aspect of the present invention provides a vector containing the above-mentioned nucleic acid sequence.
本发明第四方面提供了一种宿主细胞,其转化或转染了上述的载体。The fourth aspect of the present invention provides a host cell transformed or transfected with the above-mentioned vector.
本发明第五方面提供了一种疫苗,包含上述的核酸序列、或者上述的氨基酸序列、或者上述的载体、或者上述的宿主细胞。A fifth aspect of the present invention provides a vaccine, comprising the above-mentioned nucleic acid sequence, or the above-mentioned amino acid sequence, or the above-mentioned vector, or the above-mentioned host cell.
所述疫苗还包含其他HIV疫苗。The vaccine also includes other HIV vaccines.
所述包含的疫苗为基于PD1的疫苗;优选的还包含佐剂。The included vaccine is a PD1-based vaccine; preferably an adjuvant is also included.
本发明第六方面提供了一种疫苗的制备方法,包含制备权利要求上述疫苗所需的步骤。A sixth aspect of the present invention provides a method for preparing a vaccine, which comprises the steps required for preparing the above-mentioned vaccine in the claims.
本发明第七方面提供了上述核酸序列、或者上述的氨基酸序列、或者上述的载体、或者上述的宿主细胞在制备预防和治疗HIV疾病的药物的应用。The seventh aspect of the present invention provides the application of the above-mentioned nucleic acid sequence, or the above-mentioned amino acid sequence, or the above-mentioned vector, or the above-mentioned host cell in preparing a medicine for preventing and treating HIV disease.
本发明第八方面提供了上述核酸序列、或者上述的氨基酸序列、或者上述的载体、或者上述的宿主细胞在制备HIV疾病诊断试剂中的应用。The eighth aspect of the present invention provides the use of the above-mentioned nucleic acid sequence, or the above-mentioned amino acid sequence, or the above-mentioned vector, or the above-mentioned host cell in the preparation of HIV disease diagnostic reagents.
在本发明中,除非另有说明,否则本文中使用的科学和技术名词具有本领域技术人员所通常理解的含义。并且,本文中所用的细胞培养、分子生物学、免疫学实验室操作步骤均为相应领域内广泛使用的常规步骤。同时,为了更好地理解本发明,下面提供相关术语的定义和解释。In the present invention, unless otherwise specified, scientific and technical terms used herein have the meanings commonly understood by those skilled in the art. In addition, the cell culture, molecular biology, and immunology laboratory operation steps used in this paper are all routine steps widely used in the corresponding fields. Meanwhile, for a better understanding of the present invention, definitions and explanations of related terms are provided below.
如本文中所使用的,术语“表位”是指,抗原上被免疫球蛋白或抗体特异性结合的部位。“表位”在本领域内也称为“抗原决定簇”。表位或抗原决定簇通常由分子的化学活性表面基团例如氨基酸或碳水化合物或糖侧链组成并且通常具有特定的三维结构特征以及特定的电荷特征。例如,表位通常以独特的空间构象包括至少3,4,5,6,7,8,9,10,11,12,13,14或15个连续或非连续的氨基酸,其可以是“线性的”或“构象的”。参见,例如,EpitopeMapping Protocols in Methods in Molecular Biology,第66卷,G.E.Morris,Ed.(1996)。在线性表位中,蛋白质与相互作用分子(例如抗体)之间的所有相互作用的点沿着蛋白质的一级氨基酸序列线性存在。在构象表位中,相互作用的点跨越彼此分开的蛋白质氨基酸残基而存在。As used herein, the term "epitope" refers to a site on an antigen that is specifically bound by an immunoglobulin or antibody. "Epitopes" are also known in the art as "antigenic determinants". Epitopes or antigenic determinants usually consist of chemically active surface groups of molecules such as amino acids or carbohydrate or sugar side chains and usually have specific three-dimensional structural characteristics as well as specific charge characteristics. For example, epitopes typically include at least 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 consecutive or non-contiguous amino acids in a unique spatial conformation, which may be "linear" "or conformational". See, eg, EpitopeMapping Protocols in Methods in Molecular Biology, Vol. 66, G.E. Morris, Ed. (1996). In a linear epitope, all points of interaction between a protein and an interacting molecule (eg, an antibody) exist linearly along the protein's primary amino acid sequence. In conformational epitopes, points of interaction exist across protein amino acid residues that are separated from each other.
如本文中所使用的,术语“载体(vector)”是指,可将多核苷酸插入其中的一种核酸运载工具。当载体能使插入的多核苷酸编码的蛋白获得表达时,载体称为表达载体。载体可以通过转化,转导或者转染导入宿主细胞,使其携带的遗传物质元件在宿主细胞中获得扩增和/或表达。载体是本领域技术人员公知的,包括但不限于:质粒;噬菌体;柯斯质粒等等。As used herein, the term "vector" refers to a nucleic acid delivery vehicle into which a polynucleotide can be inserted. When the vector can express the protein encoded by the inserted polynucleotide, the vector is called an expression vector. The vector can be introduced into a host cell by transformation, transduction or transfection so that the elements of genetic material it carries are amplified and/or expressed in the host cell. Vectors are well known to those skilled in the art and include, but are not limited to: plasmids; bacteriophages; cosmids and the like.
如本文中所使用的,20种常规氨基酸和其缩写遵从常规用法。参见Immunology-ASynthesis(第2版,E.S.Golub和D.R.Gren,Eds.,Sinauer Associates,Sunderland,Mass.(1991)),其通过引用合并入本文。As used herein, the 20 conventional amino acids and their abbreviations follow conventional usage. See Immunology-ASynthesis (2nd Edition, E.S. Golub and D.R. Gren, Eds., Sinauer Associates, Sunderland, Mass. (1991)), which is incorporated herein by reference.
本发明具体公开了一种二价HIV嵌合Gag抗原,该抗原包含Gag嵌合序列1、Gag嵌合序列2及可溶性的PD1序列,同时还公开了抗原的制备方法及在预防、治疗HIV疾病中的应用及诊断HIV疾病的试剂中的应用。本发明二价HIV嵌合Gag抗原是基于中国数百株HIV-1B/B',C/CRF07/08_BC和CRF01_AE Gag P41序列而设计的,其包含了最保守的T细胞抗原决定表位,本发明还在基于PD1的疫苗的研究成果上设计了对应的疫苗,该疫苗具有诱导广谱HIV特异性T细胞免疫的作用。The invention specifically discloses a bivalent HIV chimeric Gag antigen, the antigen comprises Gag
附图说明Description of drawings
图1:编码二价HIV嵌合Gag抗原的Gag p41mosaic1和Gag p41mosaic2的核酸序列。Figure 1: Nucleic acid sequences of Gag p41mosaic1 and Gag p41mosaic2 encoding bivalent HIV chimeric Gag antigens.
图2:与图1的核酸序列对应的氨基酸序列。Figure 2: Amino acid sequence corresponding to the nucleic acid sequence of Figure 1 .
图3:两个HIV-1Gag嵌合抗原氨基酸序列T细胞抗原决定表位覆盖率分析图。Figure 3: T-cell epitope coverage analysis of the amino acid sequences of two HIV-1 Gag chimeric antigens.
图4:基于PD1的二价HIV嵌合Gag抗原结构图。Figure 4: Structure diagram of PD1-based bivalent HIV chimeric Gag antigen.
图5:Western blot图:二价HIV嵌合Gag抗原的表达和从293T细胞中的释放。Figure 5: Western blot plot: Bivalent HIV chimeric Gag antigen expression and release from 293T cells.
图6:本发明二价HIV嵌合Gag抗原(mosaic)的疫苗在小鼠模型中诱导出针对中国三种亚型(HIV-1B/B',C/CRF07/08_BC和CRF01_AE)的T细胞反应的ELISPOT结果图。图中横坐标为检测项目,包括B亚型多肽、BC亚型多肽和AE亚型多肽,纵坐标为每百万脾细胞ELISPOT数。右方标注:PBS指代阴性对照,p24Fc是pVAX-P24Fc的简写,msPD1-p24Fc是pVAX-msPD1-p24Fc的简写,mosaic是pVAX-mosaic的简写,huPD1-mosaic是pVAX-huPD1-mosaic的简写。Figure 6: The bivalent HIV chimeric Gag antigen (mosaic) vaccine of the present invention induces T cell responses against three Chinese subtypes (HIV-1B/B', C/CRF07/08_BC and CRF01_AE) in a mouse model ELISPOT result graph. The abscissa in the figure is the detection items, including B subtype polypeptide, BC subtype polypeptide and AE subtype polypeptide, and the ordinate is the number of ELISPOT per million spleen cells. Labels on the right: PBS refers to negative control, p24Fc is short for pVAX-P24Fc, msPD1-p24Fc is short for pVAX-msPD1-p24Fc, mosaic is short for pVAX-mosaic, and huPD1-mosaic is short for pVAX-huPD1-mosaic.
图7:本发明二价HIV嵌合Gag抗原的疫苗在恒河猴模型中诱导出T细胞反应的ELISPOT结果图。图7A示出猴疫苗免疫试验的时间安排,横轴上的数字代表免疫时间/取样时间;图7B示出二十八周间,不同时间点,四只猴针对B亚型P24蛋白的三个不交叉肽库的T细胞反应;图7C示出二十八周间,四只猴针对三个亚型P17和P24蛋白的四个不交叉肽库的T细胞反应;图7D示出第二十八周间,四只猴针对AE亚型P17和P24蛋白的单一肽的T细胞反应,数字是单一肽的编号。Fig. 7: ELISPOT result graph of the bivalent HIV chimeric Gag antigen vaccine of the present invention inducing T cell response in a rhesus monkey model. Figure 7A shows the time schedule of the monkey vaccine immunization test, and the numbers on the horizontal axis represent the immunization time/sampling time; Figure 7B shows the 28 weeks, different time points, four monkeys against the B subtype P24 protein three T cell responses that do not cross peptide pools; Figure 7C shows T cell responses of four monkeys against four non-crossing peptide pools of the three isoforms of P17 and P24 proteins over twenty-eight weeks; Figure 7D shows the twentieth Over eight weeks, T cell responses of four monkeys to single peptides of AE subtype P17 and P24 proteins, numbers are the number of single peptides.
图8:用二价HIV嵌合Gag抗原的肽库分为Mosaic p41-1(上)和Mosaic p41-2(下)检测中国自然感染HIV病人的T细胞反应的ELISPOT结果图。Figure 8: ELISPOT results of detecting T cell responses in Chinese naturally infected HIV patients using a peptide pool of bivalent HIV chimeric Gag antigens divided into Mosaic p41-1 (top) and Mosaic p41-2 (bottom).
具体实施方式Detailed ways
除非特殊说明,本发明所用术语具有本发明所属领域中的一般含义。Unless otherwise specified, terms used in the present invention have their ordinary meanings in the art to which the present invention belongs.
下面参考具体实施例和附图,对本发明进行说明,需要说明的是,这些实施例仅仅是说明性的,而不能理解为对本发明的限制。实施例中未注明具体技术或条件的,均按照常规实验条件,或按照制造厂商说明书建议的条件。所用试剂或仪器未注明生产厂商者,均为可以通过市购获得的常规产品。The present invention will be described below with reference to specific embodiments and accompanying drawings. It should be noted that these embodiments are merely illustrative and should not be construed as limiting the present invention. If no specific technology or conditions are indicated in the examples, conventional experimental conditions or conditions suggested in the manufacturer's instructions are used. The reagents or instruments used without the manufacturer's indication are conventional products that can be obtained from the market.
实施例1:二价HIV嵌合Gag抗原设计Example 1: Bivalent HIV Chimeric Gag Antigen Design
1.抗原序列选择:1. Antigen sequence selection:
理想情况下,HIV-1的变种和分支之间的共同保守的抗原表位是常见的,因此可以进一步加强对多样性的自然株的防护。本实施例通过同源性抗原表位分析(http://www.hiv.lanl.gov/content/sequence/MOSAIC/),设计了一个基于数百种中国流行的HIV-1B/B',C/CRF07/08_BC和CRF01_AE亚型的病毒株序列,包括最常见的保守表位的二价HIV嵌合Gag抗原。Ideally, co-conserved epitopes between variants and branches of HIV-1 are common, thus further enhancing protection against diverse natural strains. In this example, through homologous epitope analysis (http://www.hiv.lanl.gov/content/sequence/MOSAIC/), a novel HIV-1B/B', C Sequences of strains of /CRF07/08_BC and CRF01_AE subtypes, including bivalent HIV chimeric Gag antigens for the most common conserved epitopes.
本实施例二价HIV嵌合Gag抗原的设计选择了二价HIV Gag p41基因的嵌合DNA与人类PD-1(也称为PDCD1或CD279)的可溶性结构域融合,其目的是为了提高疫苗的反应性。所述人类PD-1的可溶性结构域代表基因密码子优化后的可溶性的PD1组分,即基因密码子优化后的原始PD1表达在细胞外的部分,不含转膜和细胞内的部分,基因密码子优化的目的是增强蛋白在人细胞内的表达量。In the design of bivalent HIV chimeric Gag antigen in this example, the chimeric DNA of bivalent HIV Gag p41 gene was selected to fuse with the soluble domain of human PD-1 (also known as PDCD1 or CD279), the purpose of which is to improve the efficacy of the vaccine. reactivity. The soluble domain of the human PD-1 represents the soluble PD1 component after gene codon optimization, that is, the part of the original PD1 expressed in the extracellular after gene codon optimization, excluding the transmembrane and intracellular part, the gene The purpose of codon optimization is to enhance protein expression in human cells.
所选的二价HIV Gag p41基因的嵌合DNA包括编码嵌合1抗原的核酸序列(Gagp41mosaic1)和编码嵌合2抗原的核酸序列(Gag p41mosaic 2)。The selected chimeric DNA of the bivalent HIV Gag p41 gene included a nucleic acid sequence encoding a chimeric 1 antigen (Gagp41mosaic1) and a nucleic acid sequence encoding a chimeric 2 antigen (Gag p41mosaic 2).
编码嵌合1抗原的核酸序列为:The nucleic acid sequence encoding the chimeric 1 antigen is:
ATGGGGGCAAGAGCCTCCGTGCTGTCTGGCGGGAAACTGGACGCCTGGGAGAAGATCCGGCTGAGACCAGGAGGCAAGAAAAAGTACCGCCTGAAGCACATCGTGTGGGCATCCCGCGAACTGGAGCGATTCGCCCTGAACCCAGGACTGCTGGAAACCGCAGAGGGATGCCAGCAGATCATTGAGCAGCTGCAGTCTACACTGAAAACTGGCTCCGAGGAACTGAAGTCTCTGTTTAACACCATCGCTGTGCTGTGGTGCGTGCATCAGCGCATTGACGTGAAGGATACAAAAGAGGCCCTGGACAAGATCGAGGAAGTGCAGAACAAGTCACAGCAGAAGACTCAGCAGGCCGCTGCAGGAACCGGAAGCTCCTCTAAGGTGAGCCAGAACTATCCCATTGTCCAGAATGCACAGGGACAGATGGTGCACCAGCCACTGAGCCCTCGGACCCTGAACGCATGGGTGAAAGTGGTCGAGGAAAAGGGCTTCAATCCTGAAGTCATCCCAATGTTTAGTGCACTGTCAGAGGGGGCCACACCTCAGGATCTGAACATGATGCTGAATATCGTGGGGGGACATCAGGCCGCTATGCAGATGCTGAAGGAAACTATTAATGAGGAAGCAGCAGAGTGGGACCGAGTGCACCCAGTCCATGCAGGACCAATCCCACCTGGACAGATTCGAGAACCACGAGGATCCGATATCGCCGGCACCACATCTACTCTGCAGGAGCAGATTGGGTGGATGACCAACAATCCACCCATCCCTGTGGGAGACATCTACAAACGCTGGATCATTCTGGGCCTGAACAAGATCGTGCGAATGTATAGCCCAGTCTCCATCCTGGATATTCGGCAGGGACCAAAAGAGCCCTTCAGGGACTACGTGGATCGCTTTTATAAGACACTGAGAGCAGAACAGGCCACTCAGGAGGTGAAAAATTGGATGACAGAGACTCTGCTGGTCCAGAACGCCAATCCTGACTGCAAATCTATTCTGAAGGCTCTGGGGACCGGAGCAACACTGGAGGAAATGATGACCGCTTGTCAGGGAGTGGGAGGACCAGGACACAAGGCAAGGGTCCTG(SEQ ID NO:1)ATGGGGGCAAGAGCCTCCGTGCTGTCTGGCGGGAAACTGGACGCCTGGGAGAAGATCCGGCTGAGACCAGGAGGCAAGAAAAAGTACCGCCTGAAGCACATCGTGTGGGCATCCCGCGAACTGGAGCGATTCGCCCTGAACCCAGGACTGCTGGAAACCGCAGAGGGATGCCAGCAGATCATTGAGCAGCTGCAGTCTACACTGAAAACTGGCTCCGAGGAACTGAAGTCTCTGTTTAACACCATCGCTGTGCTGTGGTGCGTGCATCAGCGCATTGACGTGAAGGATACAAAAGAGGCCCTGGACAAGATCGAGGAAGTGCAGAACAAGTCACAGCAGAAGACTCAGCAGGCCGCTGCAGGAACCGGAAGCTCCTCTAAGGTGAGCCAGAACTATCCCATTGTCCAGAATGCACAGGGACAGATGGTGCACCAGCCACTGAGCCCTCGGACCCTGAACGCATGGGTGAAAGTGGTCGAGGAAAAGGGCTTCAATCCTGAAGTCATCCCAATGTTTAGTGCACTGTCAGAGGGGGCCACACCTCAGGATCTGAACATGATGCTGAATATCGTGGGGGGACATCAGGCCGCTATGCAGATGCTGAAGGAAACTATTAATGAGGAAGCAGCAGAGTGGGACCGAGTGCACCCAGTCCATGCAGGACCAATCCCACCTGGACAGATTCGAGAACCACGAGGATCCGATATCGCCGGCACCACATCTACTCTGCAGGAGCAGATTGGGTGGATGACCAACAATCCACCCATCCCTGTGGGAGACATCTACAAACGCTGGATCATTCTGGGCCTGAACAAGATCGTGCGAATGTATAGCCCAGTCTCCATCCTGGATATTCGGCAGGGACCAAAAGAGCCCTTCAGGGACTACGTGGATCGCTTTTATAAGACACTGAGAGCAGAACAGGCCACTCAGGAGGTGAAAAATTGGATGACAGAGACTCTGCTGGTCCAGAACGCCAATCCTGACTGCAAATCTATTC TGAAGGCTCTGGGGACCGGAGCAACACTGGAGGAAATGATGACCGCTTGTCAGGGAGTGGGAGGACCAGGACACAAGGCAAGGGTCCTG (SEQ ID NO: 1)
编码嵌合2抗原的核酸序列为:The nucleic acid sequence encoding the chimeric 2 antigen is:
ATGGGCGCCCGAGCCAGCATCCTGCGGGGAGGCAAGCTGGATAAATGGGAGAAGATTAGGCTGCGCCCCGGGGGAAAAAAGCACTACATGCTGAAGCATCTGGTGTGGGCTTCTCGGGAACTGGAGAGATTCGCAGTCAACCCAGGCCTGCTGGAAACCAGTGAGGGGTGCAAACAGATCATTAAGCAGCTGCAGCCCGCTCTGCAGACCGGAACAGAGGAACTGCGCAGTCTGTTTAACACTGTGGCCACCCTGTACTGCGTGCACCAGCGAATCGAGATCAAGGACACAAAGGAGGCCCTGGATAAAATCGAGGAAGAGCAGAATAAGTCCAAAAAGAAAGCTCAGCAGACAGCTGCAGATACTGGAAACAATTCTCAGGTGAGTCAGAACTATCCAATCGTCCAGAATCTGCAGGGCCAGATGGTGCACCAGCCTATTAGCCCAAGAACCCTGAACGCCTGGGTGAAAGTGGTCGAAGAGAAGGCTTTCAGCCCCGAAGTCATCCCTATGTTTACCGCCCTGTCCGAGGGAGCTACACCTCAGGACCTGAACACCATGCTGAATACAGTGGGCGGGCACCAGGCTGCTATGCAGATCCTGAAGGACACTATTAATGAAGAGGCAGCCGAGTGGGATAGGCTGCACCCAGTGCATGCAGGACCAGTCGCTCCTGGACAGATGAGAGAACCTAGGGGAAGTGATATCGCCGGCACTACCTCAAACCTGCAGGAGCAGATTGGCTGGATGACAAGCAATCCTCCAATCCCCGTGGGGGAAATCTACAAAAGATGGATCATTCTGGGACTGAACAAGATCGTGAGGATGTATTCACCTACTAGCATCCTGGACATCAAGCAGGGGCCAAAGGAGCCCTTCAGAGACTATGTGGATAGGTTCTTTAAGACCCTGAGAGCTGAACAGGCATCCCAGGACGTGAAAAATTGGATGACTGATACCCTGCTGGTCCAGAACGCAAATCCTGATTGCAAAACAATCCTGAAGGCCCTGGGCCCAGCTGCAACTCTGGAGGAGATGATGACCGCTTGCCAGGGCGTGGGAGGACCTTCACATAAAGCCAGAGTGCTG(SEQ ID NO:2)ATGGGCGCCCGAGCCAGCATCCTGCGGGGAGGCAAGCTGGATAAATGGGAGAAGATTAGGCTGCGCCCCGGGGGAAAAAAGCACTACATGCTGAAGCATCTGGTGTGGGCTTCTCGGGAACTGGAGAGATTCGCAGTCAACCCAGGCCTGCTGGAAACCAGTGAGGGGTGCAAACAGATCATTAAGCAGCTGCAGCCCGCTCTGCAGACCGGAACAGAGGAACTGCGCAGTCTGTTTAACACTGTGGCCACCCTGTACTGCGTGCACCAGCGAATCGAGATCAAGGACACAAAGGAGGCCCTGGATAAAATCGAGGAAGAGCAGAATAAGTCCAAAAAGAAAGCTCAGCAGACAGCTGCAGATACTGGAAACAATTCTCAGGTGAGTCAGAACTATCCAATCGTCCAGAATCTGCAGGGCCAGATGGTGCACCAGCCTATTAGCCCAAGAACCCTGAACGCCTGGGTGAAAGTGGTCGAAGAGAAGGCTTTCAGCCCCGAAGTCATCCCTATGTTTACCGCCCTGTCCGAGGGAGCTACACCTCAGGACCTGAACACCATGCTGAATACAGTGGGCGGGCACCAGGCTGCTATGCAGATCCTGAAGGACACTATTAATGAAGAGGCAGCCGAGTGGGATAGGCTGCACCCAGTGCATGCAGGACCAGTCGCTCCTGGACAGATGAGAGAACCTAGGGGAAGTGATATCGCCGGCACTACCTCAAACCTGCAGGAGCAGATTGGCTGGATGACAAGCAATCCTCCAATCCCCGTGGGGGAAATCTACAAAAGATGGATCATTCTGGGACTGAACAAGATCGTGAGGATGTATTCACCTACTAGCATCCTGGACATCAAGCAGGGGCCAAAGGAGCCCTTCAGAGACTATGTGGATAGGTTCTTTAAGACCCTGAGAGCTGAACAGGCATCCCAGGACGTGAAAAATTGGATGACTGATACCCTGCTGGTCCAGAACGCAAATCCTGATTGCAAAACAATCC TGAAGGCCCTGGGCCCAGCTGCAACTCTGGAGGAGATGATGACCGCTTGCCAGGGCGTGGGAGGACCTTCACATAAAGCCAGAGTGCTG (SEQ ID NO:2)
编码嵌合1抗原的核酸序列所对应的氨基酸序列为:The amino acid sequence corresponding to the nucleic acid sequence encoding the chimeric 1 antigen is:
MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHIVWASRELERFALNPGLLETAEGCQQIIEQLQSTLKTGSEELKSLFNTIAVLWCVHQRIDVKDTKEALDKIEEVQNKSQQKTQQAAAGTGSSSKVSQNYPIVQNAQGQMVHQPLSPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIPPGQIREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGTGATLEEMMTACQGVGGPGHKARVL((SEQ IDNO:3)MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHIVWASRELERFALNPGLLETAEGCQQIIEQLQSTLKTGSEELKSLFNTIAVLWCVHQRIDVKDTKEALDKIEEVQNKSQQKTQQAAAGTGSSSKVSQNYPIVQNAQGQMVHQPLSPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIPPGQIREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGTGATLEEMMTACQGVGGPGHKARVL((SEQ IDNO:3)
编码嵌合2抗原的核酸序列所对应的氨基酸序列为:The amino acid sequence corresponding to the nucleic acid sequence encoding the chimeric 2 antigen is:
MGARASILRGGKLDKWEKIRLRPGGKKHYMLKHLVWASRELERFAVNPGLLETSEGCKQIIKQLQPALQTGTEELRSLFNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQTAADTGNNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQILKDTINEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTDTLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVL(SEQ IDNO:4)MGARASILRGGKLDKWEKIRLRPGGKKHYMLKHLVWASRELERFAVNPGLLETSEGCKQIIKQLQPALQTGTEELRSLFNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQTAADTGNNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQILKDTINEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTDTLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVL(SEQ IDNO:4)
编码嵌合1抗原的核酸序列和编码嵌合2抗原的核酸序列对比结果如图1所示。The comparison results of the nucleic acid sequence encoding the chimeric 1 antigen and the nucleic acid sequence encoding the chimeric 2 antigen are shown in FIG. 1 .
编码嵌合1抗原的核酸序列所对应的氨基酸序列和编码嵌合2抗原的核酸序列所对应的氨基酸序列对比结果如图2所示。The comparison result of the amino acid sequence corresponding to the nucleic acid sequence encoding the chimeric 1 antigen and the amino acid sequence corresponding to the nucleic acid sequence encoding the chimeric 2 antigen is shown in FIG. 2 .
2.覆盖率分析:2. Coverage analysis:
针对中国流行的HIV-1 B/B'(176株)、HIV-1 01_AE(236株)和HIV-1 C /BC(127株)亚型的序列(来自Genbank,对应ID包括AB078678-AB078687;AB078689-AB078690;AB078692-AB078704;AB078709;AB078711;AB213667-AB213689;AB213692;AB746342;AF286226;AF286229;AF286230;AF503396;AY008714;AY008716;AY180905;AY275555-AY275557;DD033495;DQ833405-DQ833436;DQ859178-DQ859180;EF036527-EF036536;EF122502-EF122505;EF122507-EF122511;EF122513-EF122522;EF122524-EF122526;EF122528-EF122545;EF122559;EF368370-EF368372;EF394231-EF394236;EF420986;FJ441290-FJ531390;FJ531405-FJ531445;GQ845124-GQ845126;GU177863;GU564221-GU564225;GU564227-GU564230;HM067748;HQ197984-HQ197989;HQ215552-HQ215556;HQ215568-HQ215577;JF719819;JF932468-JF932500;JQ028170;JQ028172-JQ028173;JQ028179;JQ028187-JQ028188;JQ028194-JQ028195;JQ028208-JQ028211;JQ028213-JQ028214;JQ028217;JQ028220-JQ028221;JQ028223;JQ028228-JQ028231;JQ028236;JQ028239;JQ028241-JQ028242;JQ028244;JQ028246-JQ028256;JQ028271;JQ028285;JQ028288-JQ028289;JQ028291;JQ028293;JQ028295;JQ028299;JQ028617-JQ028618;JQ028624;JQ028633;JQ028638;JQ028646-JQ028649;JQ028653-JQ028661;JQ234979-JQ235007;JQ423923;JQ898186;JQ898208;JQ898220;JQ900844-JQ900942;JX140658;JX392347-JX392362;JX392378-JX392384;JX960597-JX960634;KC596061-KC596066;U71182.),分析编码嵌合1抗原的核酸序列所对应的氨基酸序列和编码嵌合2抗原的核酸序列所对应的氨基酸序列(即SEQ ID NO:3和SEQ ID NO:4)的T细胞抗原决定表位覆盖率,分析结果如图3所示(图3中的AE对应HIV-1 CRF01_AE,B对应HIV-1 B/B',BC对应HIV-1 C,CRF07_BC和CRF08_BC)。Sequences for HIV-1 B/B' (176 strains), HIV-1 01_AE (236 strains) and HIV-1 C/BC (127 strains) subtypes circulating in China (from Genbank, corresponding IDs include AB078678-AB078687; AB078689-AB078690;AB078692-AB078704;AB078709;AB078711;AB213667-AB213689;AB213692;AB746342;AF286226;AF286229;AF286230;AF503396;AY008714;AY008716;AY180905;AY275555-AY275557;DD033495;DQ833405-DQ833436;DQ859178-DQ859180;EF036527- EF036536;EF122502-EF122505;EF122507-EF122511;EF122513-EF122522;EF122524-EF122526;EF122528-EF122545;EF122559;EF368370-EF368372;EF394231-EF394236;EF420986;FJ441290-FJ531390;FJ531405-FJ531445;GQ845124-GQ845126;GU177863;GU564221- GU564225;GU564227-GU564230;HM067748;HQ197984-HQ197989;HQ215552-HQ215556;HQ215568-HQ215577;JF719819;JF932468-JF932500;JQ028170;JQ028172-JQ028173;JQ028179;JQ028187-JQ028188;JQ028194-JQ028195;JQ028208-JQ028211;JQ028213-JQ028214; JQ028217;JQ028220-JQ028221;JQ028223;JQ028228-JQ028231;JQ028236;JQ028239;JQ028241-JQ028242;JQ028244;JQ028246-JQ028256;JQ028271;JQ028285;JQ028288-JQ028289;JQ028291;JQ028293;JQ028295;JQ028299;JQ028617-JQ028618;JQ028624;JQ028633; J Q028638;JQ028646-JQ028649;JQ028653-JQ028661;JQ234979-JQ235007;JQ423923;JQ898186;JQ898208;JQ898220;JQ900844-JQ900942;JX140658;JX392347-JX392362;JX392378-JX392384;JX960597-JX960634;KC596061-KC596066;U71182.),分析编码The T cell epitope coverage of the amino acid sequence corresponding to the nucleic acid sequence of the chimeric 1 antigen and the amino acid sequence corresponding to the nucleic acid sequence encoding the chimeric 2 antigen (i.e. SEQ ID NO: 3 and SEQ ID NO: 4), The analysis results are shown in Figure 3 (AE in Figure 3 corresponds to HIV-1 CRF01_AE, B corresponds to HIV-1 B/B', BC corresponds to HIV-1 C, CRF07_BC and CRF08_BC).
结果显示,如果以总体和每个亚型的T细胞九肽表位中九个氨基酸序列完全一致(Exact match,9/9match)计算,覆盖率均达到70%左右;如果以T细胞九肽表位中有八个氨基酸序列完全一致(8/9match)计算,覆盖率均达到90%左右;如果以T细胞九肽表位中有七个氨基酸序列完全一致(7/9match)计算,覆盖率均达到95%左右。其中,又以对中国性传播为主的HIV-101_AE亚型病毒的覆盖率最高。The results show that if the nine amino acid sequences in the T cell nonapeptide epitope of the whole and each subtype are completely identical (Exact match, 9/9 match), the coverage rate is about 70%; Eight amino acid sequences in the epitope are completely identical (8/9match), and the coverage rate is about 90%; if there are seven amino acid sequences in the T cell nonapeptide epitope (7/9match), the coverage rate is all to around 95%. Among them, the HIV-101_AE subtype virus, which is mainly sexually transmitted in China, has the highest coverage.
实施例2:基于PD1的二价HIV嵌合Gag抗原的构建Example 2: Construction of PD1-based bivalent HIV chimeric Gag antigen
二价HIV嵌合Gag抗原结构如图4所示,其中CMV代表CMV启动子,tPA代表组织纤溶酶原激活蛋白表达及释放的信号肽序列,sPD1代表可溶性的PD1组分,为对应的核苷酸或氨基酸序列只包含PD1蛋白位于胞外区的序列,每个linker(链接体)含(G4S)3氨基酸序列,(G4S)3氨基酸序列代表三个GGGGS的重复氨基酸序列。The bivalent HIV chimeric Gag antigen structure is shown in Figure 4, in which CMV represents the CMV promoter, tPA represents the signal peptide sequence of tissue plasminogen activator protein expression and release, and sPD1 represents the soluble PD1 component, which is the corresponding nuclear The nucleotide or amino acid sequence only contains the sequence of PD1 protein located in the extracellular region, each linker (linker) contains (G4S) 3 amino acid sequence, and the (G4S) 3 amino acid sequence represents the repeated amino acid sequence of three GGGGS.
基于PD1的二价HIV嵌合Gag抗原更具体的序列组成如下:The more specific sequence composition of the PD1-based bivalent HIV chimeric Gag antigen is as follows:
START-tPA-BamHI-opt-huPD1-EcoRI-linker-Gag p41mosaic1-linker-Gagp41mosaic 2-STOP-XhoI-PmeI START -tPA-BamHI-opt-huPD1-EcoRI- linker -Gag p41mosaic1- linker -Gagp41mosaic 2- STOP -XhoI-PmeI
其中START代表基因起始密码子ATG,tPA代表组织纤溶酶原激活蛋白表达及释放的信号肽序列,BamHI、EcoRI、XhoI和PmeI代表对应的限制性内切酶酶切位点,opt-huPD1代表基因密码子优化后的可溶性的PD1组分,即基因密码子优化后的原始PD1表达在细胞外的部分,不含跨膜区和细胞内的部分,STOP代表基因终止密码子,每个linker(链接体)含(G4S)3氨基酸序列,(G4S)3代表三个GGGGS的重复氨基酸序列。START represents the gene initiation codon ATG, tPA represents the signal peptide sequence of tissue plasminogen activator protein expression and release, BamHI, EcoRI, XhoI and PmeI represent the corresponding restriction endonuclease cleavage sites, opt-huPD1 Represents the soluble PD1 component after gene codon optimization, that is, the part of the original PD1 expression after gene codon optimization in the extracellular, excluding the transmembrane region and the intracellular part, STOP represents the gene stop codon, each linker (Linker) contains (G4S) 3 amino acid sequence, (G4S) 3 represents the repeated amino acid sequence of three GGGGS.
START-tPA-BamHI-opt-huPD1-EcoRI-linker-Gag p41mosaic1-linker-Gagp41mosaic 2-STOP-XhoI-PmeI对应的具体核酸序列如下:The specific nucleic acid sequence corresponding to START -tPA- BamHI -opt-huPD1- EcoRI -linker-Gag p41mosaic1- linker -Gagp41mosaic 2- STOP -XhoI-PmeI is as follows:
ATGGACGCCATGCTGCGCGGACTGTGCTGCGTGCTGCTACTGTGCGGCGCCGTGTTCGTGAGCCCCAGCCAGGAGATCCACGCCCGATTCAGGAGAGGAGCCAGAGGAGGATCCATGCAGATTCCTCAGGCTCCATGGCCTGTGGTGTGGGCAGTGCTGCAGCTGGGATGGAGACCAGGATGGTTCCTGGACTCCCCTGACAGACCATGGAATCCCCCTACATTTTCTCCTGCACTGCTGGTGGTGACTGAGGGCGATAACGCCACCTTCACATGCAGCTTTTCCAACACTTCTGAAAGTTTCGTCCTGAATTGGTACAGGATGTCACCCAGCAACCAGACTGACAAGCTGGCCGCTTTTCCCGAAGACCGCTCCCAGCCTGGGCAAGATTGCCGATTCCGGGTGACACAGCTGCCTAATGGAAGGGACTTTCACATGAGTGTGGTCCGCGCTCGGAGAAACGATTCAGGAACCTATCTGTGTGGCGCAATCAGCCTGGCCCCTAAGACACAGATCAAGGAGAGCCTGAGAGCCGAACTGAGGGTGACTGAGAGGCGCGCTGAAGTCCCAACCGCACATCCTTCCCCATCTCCCCGACCAGCAGGACAGGAATTCCGGGGAGGCGGGGGAAGTGGAGGAGGAGGATCCGGAGGAGGAGGAAGCATGGGGGCAAGAGCCTCCGTGCTGTCTGGCGGGAAACTGGACGCCTGGGAGAAGATCCGGCTGAGACCAGGAGGCAAGAAAAAGTACCGCCTGAAGCACATCGTGTGGGCATCCCGCGAACTGGAGCGATTCGCCCTGAACCCAGGACTGCTGGAAACCGCAGAGGGATGCCAGCAGATCATTGAGCAGCTGCAGTCTACACTGAAAACTGGCTCCGAGGAACTGAAGTCTCTGTTTAACACCATCGCTGTGCTGTGGTGCGTGCATCAGCGCATTGACGTGAAGGATACAAAAGAGGCCCTGGACAAGATCGAGGAAGTGCAGAACAAGTCACAGCAGAAGACTCAGCAGGCCGCTGCAGGAACCGGAAGCTCCTCTAAGGTGAGCCAGAACTATCCCATTGTCCAGAATGCACAGGGACAGATGGTGCACCAGCCACTGAGCCCTCGGACCCTGAACGCATGGGTGAAAGTGGTCGAGGAAAAGGGCTTCAATCCTGAAGTCATCCCAATGTTTAGTGCACTGTCAGAGGGGGCCACACCTCAGGATCTGAACATGATGCTGAATATCGTGGGGGGACATCAGGCCGCTATGCAGATGCTGAAGGAAACTATTAATGAGGAAGCAGCAGAGTGGGACCGAGTGCACCCAGTCCATGCAGGACCAATCCCACCTGGACAGATTCGAGAACCACGAGGATCCGATATCGCCGGCACCACATCTACTCTGCAGGAGCAGATTGGGTGGATGACCAACAATCCACCCATCCCTGTGGGAGACATCTACAAACGCTGGATCATTCTGGGCCTGAACAAGATCGTGCGAATGTATAGCCCAGTCTCCATCCTGGATATTCGGCAGGGACCAAAAGAGCCCTTCAGGGACTACGTGGATCGCTTTTATAAGACACTGAGAGCAGAACAGGCCACTCAGGAGGTGAAAAATTGGATGACAGAGACTCTGCTGGTCCAGAACGCCAATCCTGACTGCAAATCTATTCTGAAGGCTCTGGGGACCGGAGCAACACTGGAGGAAATGATGACCGCTTGTCAGGGAGTGGGAGGACCAGGACACAAGGCAAGGGTCCTGGGAGGCGGGGGAAGTGGAGGAGGAGGATCCGGAGGAGGAGGAAGCATGGGCGCCCGAGCCAGCATCCTGCGGGGAGGCAAGCTGGATAAATGGGAGAAGATTAGGCTGCGCCCCGGGGGAAAAAAGCACTACATGCTGAAGCATCTGGTGTGGGCTTCTCGGGAACTGGAGAGATTCGCAGTCAACCCAGGCCTGCTGGAAACCAGTGAGGGGTGCAAACAGATCATTAAGCAGCTGCAGCCCGCTCTGCAGACCGGAACAGAGGAACTGCGCAGTCTGTTTAACACTGTGGCCACCCTGTACTGCGTGCACCAGCGAATCGAGATCAAGGACACAAAGGAGGCCCTGGATAAAATCGAGGAAGAGCAGAATAAGTCCAAAAAGAAAGCTCAGCAGACAGCTGCAGATACTGGAAACAATTCTCAGGTGAGTCAGAACTATCCAATCGTCCAGAATCTGCAGGGCCAGATGGTGCACCAGCCTATTAGCCCAAGAACCCTGAACGCCTGGGTGAAAGTGGTCGAAGAGAAGGCTTTCAGCCCCGAAGTCATCCCTATGTTTACCGCCCTGTCCGAGGGAGCTACACCTCAGGACCTGAACACCATGCTGAATACAGTGGGCGGGCACCAGGCTGCTATGCAGATCCTGAAGGACACTATTAATGAAGAGGCAGCCGAGTGGGATAGGCTGCACCCAGTGCATGCAGGACCAGTCGCTCCTGGACAGATGAGAGAACCTAGGGGAAGTGATATCGCCGGCACTACCTCAAACCTGCAGGAGCAGATTGGCTGGATGACAAGCAATCCTCCAATCCCCGTGGGGGAAATCTACAAAAGATGGATCATTCTGGGACTGAACAAGATCGTGAGGATGTATTCACCTACTAGCATCCTGGACATCAAGCAGGGGCCAAAGGAGCCCTTCAGAGACTATGTGGATAGGTTCTTTAAGACCCTGAGAGCTGAACAGGCATCCCAGGACGTGAAAAATTGGATGACTGATACCCTGCTGGTCCAGAACGCAAATCCTGATTGCAAAACAATCCTGAAGGCCCTGGGCCCAGCTGCAACTCTGGAGGAGATGATGACCGCTTGCCAGGGCGTGGGAGGACCTTCACATAAAGCCAGAGTGCTGTGATAACCGCTCGAGCGGCCGGCGCGCCGTTTAAACAAAGCT(SEQ ID NO:5) ATG GACGCCATGCTGCGCGGACTGTGCTGCGTGCTGCTACTGTGCGGCGCCGTGTTCGTGAGCCCCAGCCAGGAGATCCACGCCCGATTCAGGAGAGGAGCCAGAGGA GGATCC ATGCAGATTCCTCAGGCTCCATGGCCTGTGGTGTGGGCAGTGCTGCAGCTGGGATGGAGACCAGGATGGTTCCTGGACTCCCCTGACAGACCATGGAATCCCCCTACATTTTCTCCTGCACTGCTGGTGGTGACTGAGGGCGATAACGCCACCTTCACATGCAGCTTTTCCAACACTTCTGAAAGTTTCGTCCTGAATTGGTACAGGATGTCACCCAGCAACCAGACTGACAAGCTGGCCGCTTTTCCCGAAGACCGCTCCCAGCCTGGGCAAGATTGCCGATTCCGGGTGACACAGCTGCCTAATGGAAGGGACTTTCACATGAGTGTGGTCCGCGCTCGGAGAAACGATTCAGGAACCTATCTGTGTGGCGCAATCAGCCTGGCCCCTAAGACACAGATCAAGGAGAGCCTGAGAGCCGAACTGAGGGTGACTGAGAGGCGCGCTGAAGTCCCAACCGCACATCCTTCCCCATCTCCCCGACCAGCAGGACAG GAATTC CGG GGAGGCGGGGGAAGTGGAGGAGGAGGATCCGGAGGAGGAGGAAGC GGAGGCGGGGGAAGTGGAGGAGGAGGATCCGGAGGAGGAGGAAGC TGATAA CCG CTCGAG CGGCCGGCGCGCC GTTTAAAC AAAGCT(SEQ ID NO:5)
其中人可溶性的PD1基因密码子优化后的核酸(opt-huPD1)序列为:The codon-optimized nucleic acid (opt-huPD1) sequence of the human soluble PD1 gene is:
ATGCAGATTCCTCAGGCTCCATGGCCTGTGGTGTGGGCAGTGCTGCAGCTGGGATGGAGACCAGGATGGTTCCTGGACTCCCCTGACAGACCATGGAATCCCCCTACATTTTCTCCTGCACTGCTGGTGGTGACTGAGGGCGATAACGCCACCTTCACATGCAGCTTTTCCAACACTTCTGAAAGTTTCGTCCTGAATTGGTACAGGATGTCACCCAGCAACCAGACTGACAAGCTGGCCGCTTTTCCCGAAGACCGCTCCCAGCCTGGGCAAGATTGCCGATTCCGGGTGACACAGCTGCCTAATGGAAGGGACTTTCACATGAGTGTGGTCCGCGCTCGGAGAAACGATTCAGGAACCTATCTGTGTGGCGCAATCAGCCTGGCCCCTAAGACACAGATCAAGGAGAGCCTGAGAGCCGAACTGAGGGTGACTGAGAGGCGCGCTGAAGTCCCAACCGCACATCCTTCCCCATCTCCCCGACCAGCAGGACAG(SEQ ID NO:6)ATGCAGATTCCTCAGGCTCCATGGCCTGTGGTGTGGGCAGTGCTGCAGCTGGGATGGAGACCAGGATGGTTCCTGGACTCCCCTGACAGACCATGGAATCCCCCTACATTTTCTCCTGCACTGCTGGTGGTGACTGAGGGCGATAACGCCACCTTCACATGCAGCTTTTCCAACACTTCTGAAAGTTTCGTCCTGAATTGGTACAGGATGTCACCCAGCAACCAGACTGACAAGCTGGCCGCTTTTCCCGAAGACCGCTCCCAGCCTGGGCAAGATTGCCGATTCCGGGTGACACAGCTGCCTAATGGAAGGGACTTTCACATGAGTGTGGTCCGCGCTCGGAGAAACGATTCAGGAACCTATCTGTGTGGCGCAATCAGCCTGGCCCCTAAGACACAGATCAAGGAGAGCCTGAGAGCCGAACTGAGGGTGACTGAGAGGCGCGCTGAAGTCCCAACCGCACATCCTTCCCCATCTCCCCGACCAGCAGGACAG(SEQ ID NO:6)
实施例3:二价HIV嵌合Gag抗原表达pVAX1表达质粒的构建Example 3: Construction of bivalent HIV chimeric Gag antigen expression pVAX1 expression plasmid
本实施例二价HIV嵌合Gag抗原表达pVAX1表达质粒的构建包括如下步骤:The construction of the bivalent HIV chimeric Gag antigen expressing pVAX1 expression plasmid in this example includes the following steps:
(1)制备PCR扩增产物:经过分析539株HIV的序列(即上述提及的HIV-1B/B'(176株)、HIV-1CRF01_AE(236株)和HIV-1C/CRF07/08_BC(127株)亚型的序列),取保守序列,通过体外合成上述编码嵌合1抗原的核酸序列(SEQ ID NO:1)-linker-编码嵌合2抗原的核酸序列(SEQ ID NO:2),将合成的序列稀释到10uM浓度,取5ul为模板进行PCR扩增,PCR反应体系(PrimeSTAR HS DNA Polymerase,Takara货号R010A):共25ul反应体系,包括5ul模板,5μl的5x缓冲液,4μl的2.5mM dNTP,各1μl的20pM正向引物和反向引物,1μl的Taq酶(2.5units/μl),3μl的水。PCR反应条件:92℃2分钟;[92℃10秒;55℃15秒;68℃1.5分钟]33周期;68℃7分钟;4℃5分钟。所述正向引物(p41-1with linker)的序列为:5’-CCGGAATTCCGGGGAGGC GGGGGAAGT GGAGGAGGA GGATCCGGA GGAGGAGGA AGCATGGGG GCAAGAGCC TCC-3’(SEQ ID NO:8);所述反向引物(p41-2)的序列为:5’-CCGGCGCGC CGTTTAAAC AAAGCTCCGCTCGAGCGG TTATCACAG CACTCTGGC TTTATG-3’(SEQ ID NO:9)。通过上述反应体系和反应条件进行PCR扩增反应即得到PCR扩增产物。(1) Preparation of PCR amplification products: After analyzing the sequences of 539 strains of HIV (namely, the above-mentioned HIV-1B/B' (176 strains), HIV-1CRF01_AE (236 strains) and HIV-1C/CRF07/08_BC (127 strains) strain) subtype sequence), take the conserved sequence, and synthesize the above-mentioned nucleic acid sequence encoding chimeric 1 antigen (SEQ ID NO: 1)-linker-
(2)制备pVAX1-huPD1表达载体:先合成上述人可溶性的PD1基因密码子优化后的核酸(opt-huPD1,即SEQ ID NO:6),然后将opt-huPD1通过核酸连接酶,接入表达质粒载体pVAX1(Invitrogen,Carlsbad,CA货号V26020)中,形成含有序列优化的人可溶性pVAX1-huPD1表达载体。(2) Preparation of pVAX1-huPD1 expression vector: first synthesize the above-mentioned human soluble PD1 gene codon-optimized nucleic acid (opt-huPD1, namely SEQ ID NO: 6), and then connect opt-huPD1 to express through nucleic acid ligase In the plasmid vector pVAX1 (Invitrogen, Carlsbad, CA Cat. No. V26020), a human soluble pVAX1-huPD1 expression vector containing sequence optimization was formed.
(3)制备pVAX-huPD1-mosaic表达质粒:然后再使用EcoR1/XhoI(New EnglandBiosystems)双酶切含有序列优化的人可溶性pVAX1-huPD1表达载体,以切掉多余片段,然后利用其酶切位点连接同样经此双酶切的上述PCR扩增产物,连接后的产物再转染DH5alpha感受态菌(GenScript,Cat.No.M00086),以上各操作均可按照对应的试剂说明书或现有常规方法进行,由此制备了pVAX-huPD1-mosaic的表达质粒。(3) Preparation of pVAX-huPD1-mosaic expression plasmid: The human soluble pVAX1-huPD1 expression vector containing sequence optimization was then double-enzyme digested with EcoR1/XhoI (New England Biosystems) to cut off redundant fragments, and then use its restriction site Connect the above-mentioned PCR amplification products that are also digested by this double enzyme, and the connected products are then transfected into DH5alpha competent bacteria (GenScript, Cat. No. M00086). The above operations can be performed according to the corresponding reagent instructions or existing conventional methods. was carried out, thereby preparing an expression plasmid of pVAX-huPD1-mosaic.
接着对应制备了不含可溶性PD1的表达质粒pVAX-mosaic做为对照(即按照上述步骤但不与opt-huPD1连接),以及按照上述步骤还制备了相应的小鼠可溶性PD1(GenBank#NM_008798)表达质粒pVAX-msPD1-mosaic和恒河猴可溶性PD1(GenBank#NM_001114358)pVAX-rhPD1-mosaic。Then, the expression plasmid pVAX-mosaic without soluble PD1 was prepared as a control (that is, according to the above steps but not connected to opt-huPD1), and the corresponding mouse soluble PD1 (GenBank #NM_008798) was also prepared according to the above steps. Plasmids pVAX-msPD1-mosaic and rhesus soluble PD1 (GenBank #NM_001114358) pVAX-rhPD1-mosaic.
将上述构建的四种pVAX1表达质粒通过聚乙烯亚胺(PEI,polysciences,Inc.Cat:23966)转染293T细胞(ATCC CRL-1573TM,下同),获得表达上清并进行Western blot检测。The four pVAX1 expression plasmids constructed above were transfected into 293T cells (ATCC CRL-1573 ™ , the same below) by polyethyleneimine (PEI, polysciences, Inc. Cat: 23966), and the expression supernatant was obtained and detected by Western blot.
具体步骤为:1)接种细胞The specific steps are: 1) Inoculate cells
转染前24小时,24孔板每孔接种0.5-2×105个293T细胞(ATCC货号CRL-11268),使其转染密度为60-80%。每孔接种细胞分别培养在0.5ml-1ml的培养基(DMEM(LifeScience,货号111995073)中。该培养基含有10%胎牛血清(FBS,Life science,货号110270106)和1%抗生素(Life science,货号1 15140122)。Twenty-four hours before transfection, 0.5-2×10 5 293T cells (ATCC catalog number CRL-11268) were seeded in each well of a 24-well plate to make the transfection density 60-80%. The cells seeded in each well were cultured in 0.5ml-1ml of medium (DMEM (LifeScience, Cat. No. 111995073), respectively. The medium contained 10% fetal bovine serum (FBS, Life science, Cat. No. 110270106) and 1% antibiotics (Life science, Item No. 1 15140122).
2)制备转染复合物,细胞转染2) Preparation of transfection complex, cell transfection
制备转染复合物:分别将上述构建的四种pVAX1表达质粒各1μg稀释于50μl optiMEM液(Life science,货号31985070,下同),轻轻混匀,得到50μl DNA稀释液;4μl PEI(1mg/ml,polysciences,Inc.货号23966)稀释于50μl opti MEM液,轻轻混匀,然后将当中的50μl PEI稀释液取出;再滴加到50μl DNA稀释液中,轻轻混匀,室温孵育10-15分钟,获得100μl PEI/DNA复合物。Preparation of transfection complex: Dilute 1 μg of each of the four pVAX1 expression plasmids constructed above in 50 μl optiMEM solution (Life science, product number 31985070, the same below), and mix gently to obtain 50 μl DNA dilution; 4 μl PEI (1 mg/ ml, polysciences, Inc. Cat. No. 23966) was diluted in 50 μl opti MEM solution, mixed gently, and then 50 μl PEI diluted solution was taken out; then added dropwise to 50 μl DNA dilution solution, mixed gently, and incubated at room temperature for 10- In 15 minutes, 100 μl of PEI/DNA complex was obtained.
细胞转染:将上述每孔接种细胞的上述含抗生素的培养基更换为新鲜的不含抗生素的培养基,该培养基含有10%胎牛血清(Life science,货号110270106)。然后,将100μlPEI/DNA复合物缓慢地加到每孔中并轻轻摇动使其均匀混合,然后放置于37℃的CO2孵育箱孵育6-8小时后,更换为新鲜的含有1%抗生素的培养基。Cell transfection: The above antibiotic-containing medium in which cells were seeded per well was replaced with fresh antibiotic-free medium containing 10% fetal bovine serum (Life science, Cat. No. 110270106). Then, 100 μl of PEI/DNA complex was slowly added to each well and shaken gently to mix evenly, then placed in a CO2 incubator at 37°C for 6-8 hours and replaced with fresh 1% antibiotics culture medium.
3)Western blot检测3) Western blot detection
在细胞中加入复合物转染72小时后,分别收集转染细胞培养液经Western blot检测表达产物并验证表达产物是否释放。72 hours after the complex was added to the cells for transfection, the culture medium of the transfected cells was collected and the expression products were detected by Western blot to verify whether the expression products were released.
转染细胞培养液用样品稀释液(样品稀释液内含:50mM of Tris-HCl[pH 8.0];137mM of NaCl;2mM of EDTA;0.5%NP-40裂解液;10%甘油;1mg/mL的胃蛋白酶抑制剂(pepstatin),1mg/mL亮肽素(leupeptin),1mg/mL胰蛋白酶抑制剂(pefabloc)稀释(转染细胞培养液培养液与样品稀释液体积比是1:5),然后在95℃下加热10分钟,然后将其加到浓度为10%的丙烯酰胺凝胶中,电泳条件设定在80伏电压30分钟,然后上调到130伏电压1个小时,电泳结束后蛋白质T条带半干转转膜到PVDF膜上(13伏电压小于1小时,Bio-Rad的Semi-Dry Transfer Cell Trans-Blot SD)。PVDF膜用PBS洗三次,然后在封闭液(即PBS含有5%脱脂奶粉和0.5%牛血清白蛋白,下同)中室温1小时或者4℃过夜。一抗(Anti-HIV-1p24Hybridoma(183-H12-5C)(NIH货号1513))用封闭液稀释(体积比是1:5000)后加到PVDF膜,室温反应2小时,然后用PBS充分洗涤。二抗(荧光标记的抗小鼠、兔和人的抗体Lico,货号P/N 926-68078)用封闭液稀释(体积比是1:10000)后继续加到PVDF膜,室温反应1小时,PVDF膜用PBS洗涤后自然干燥,接着用LI-COR扫描仪进行蛋白条带扫描。试验包括了四种疫苗抗原的表达比较:mosaic,小鼠msPD1-mosaic,人huPD1-mosaic和猴rhPD1-mosaic,mosaic即pVAX-mosaic上清。Sample diluent for transfected cell culture medium (sample diluent contains: 50 mM of Tris-HCl [pH 8.0]; 137 mM of NaCl; 2 mM of EDTA; 0.5% NP-40 lysate; 10% glycerol; 1 mg/mL of Pepsin inhibitor (pepstatin), 1mg/mL leupeptin (leupeptin), 1mg/mL trypsin inhibitor (pefabloc) diluted (transfected cell culture medium and sample dilution volume ratio is 1:5), then After heating at 95°C for 10 minutes, it was added to acrylamide gel at a concentration of 10%. The electrophoresis conditions were set at 80 volts for 30 minutes, and then raised to 130 volts for 1 hour. After electrophoresis, protein T The strips were transferred to PVDF membrane semi-dry (13 volts for less than 1 hour, Bio-Rad's Semi-Dry Transfer Cell Trans-Blot SD). The PVDF membrane was washed three times with PBS, then in blocking solution (i.e. PBS containing 5 % nonfat dry milk and 0.5% bovine serum albumin, the same below) for 1 hour at room temperature or overnight at 4°C. The primary antibody (Anti-HIV-1p24Hybridoma (183-H12-5C) (NIH product number 1513)) was diluted with blocking solution (volume The ratio of 1:5000) was added to the PVDF membrane, reacted at room temperature for 2 hours, and then washed thoroughly with PBS. The secondary antibody (fluorescent-labeled anti-mouse, rabbit and human antibody Lico, Cat. No. P/N 926-68078) was blocked with After dilution (volume ratio is 1:10000), it was added to the PVDF membrane and reacted at room temperature for 1 hour. The PVDF membrane was washed with PBS and then dried naturally, and then the protein bands were scanned with a LI-COR scanner. The test included four vaccines Antigen expression comparison: mosaic, mouse msPD1-mosaic, human huPD1-mosaic and monkey rhPD1-mosaic, mosaic is pVAX-mosaic supernatant.
结果如图5所示,从图5中可知,二价HIV嵌合Gag抗原(mosaic)本身不能有效释放,但二价HIV嵌合Gag抗原与小鼠(msPD1-mosaic)、人(huPD1-mosaic)和猴子(rhPD1-mosaic)可溶性PD1的融合蛋白都能有效表达并释放到了细胞外。The results are shown in Figure 5. It can be seen from Figure 5 that the bivalent HIV chimeric Gag antigen (mosaic) itself cannot be effectively released, but the bivalent HIV chimeric Gag antigen is associated with mouse (msPD1-mosaic), human (huPD1-mosaic) ) and monkey (rhPD1-mosaic) soluble PD1 fusion proteins can be efficiently expressed and released into the extracellular space.
实施例4:小鼠实验Example 4: Mouse Experiment
本实施例是将Balb/c小鼠经肌肉电转100ug DNA疫苗后,ELISPOT用于检测Gagp17和Gag p24刺激的脾脏CD4+和CD8+T淋巴细胞分泌IFN-y的能力。本实施例是在香港大学实验动物中心的标准无菌条件的饲养间里进行,此使用活体动物实验是经由大学委员会批准。活体动物采用六到八周龄的雌性BALB/c小鼠,其日常护理为:将六到八周龄的雌性BALB/c小鼠饲养在常规标准温度和湿度的下的笼子里,食物和水自由采食,由香港大学实验动物中心的专职人员进行日常照管。In this example, ELISPOT was used to detect the ability of spleen CD4+ and CD8+ T lymphocytes to secrete IFN-γ stimulated by Gagp17 and Gag p24 after Balb/c mice were electroporated with 100ug DNA vaccine. This example was carried out in a standard sterile room of the Laboratory Animal Center of the University of Hong Kong, and the experiment using live animals was approved by the University Committee. Live animals use six- to eight-week-old female BALB/c mice, and their daily care is as follows: six- to eight-week-old female BALB/c mice are housed in cages under conventional standard temperature and humidity, food and water The animals were fed ad libitum and were under daily care by the full-time staff of the Laboratory Animal Center of the University of Hong Kong.
具体方案如下:The specific plans are as follows:
(1)免疫处理(1) Immunotherapy
通过肌肉注射,每组小鼠分别接受三次100微升的pVAX-huPD1-mosaic(即实施例3制备得到的pVAX-huPD1-mosaic的表达质粒)、pVAX-mosaic(即实施例3中的作为对照的表达质粒pVAX-mosaic)以及已经报道过的pVAX-P24Fc和pVAX-msPD1-p24Fc(Zhou,etal.PD1-based DNA vaccine amplifies HIV-1GAG-specific CD8+T cells inmice.Journal of Clinical Investigation 2013,123:2629-2642.)的电击(EP60V)免疫注射。免疫注射3次的时间分别为第0周、第3周和第6周,每只小鼠3次免疫剂量分别为4μg、20ug、100ug(即实际DNA含量)。每一次免疫后两周,采集血液样本进行血清检测。最后一次免疫后的两周(标准短期)或30周(长期),处死小鼠,收集或制备血浆、脾脏和外周血单个核细胞,进行免疫反应分析。Through intramuscular injection, each group of mice received 100 microliters of pVAX-huPD1-mosaic (that is, the expression plasmid of pVAX-huPD1-mosaic prepared in Example 3), pVAX-mosaic (that is, the expression plasmid of Example 3 as a control), respectively. The expression plasmid pVAX-mosaic) and the reported pVAX-P24Fc and pVAX-msPD1-p24Fc (Zhou, et al. PD1-based DNA vaccine amplifies HIV-1GAG-specific CD8 + T cells inmice. Journal of Clinical Investigation 2013, 123 : 2629-2642.) electroshock (EP60V) immunization injection. The time of 3 times of immunization injection was
(2)获得目标细胞(2) Obtain target cells
处死小鼠的脾脏用3ml淋巴细胞分离缓冲液(达科为生物技术有限公司,货号DKW33-R0100)进行分离,然后将分离的细胞通过70微米(μm)过滤器(BD公司)获得单细胞。小心将单细胞用1ml RPMI1640培养液(Life Technologies Limited,货号21870092)悬起,转移到15ml离心管中进行800g 30分钟无制动离心,仔细收集中间层,然后用RPMI1640培养液洗涤三次,得到目标细胞。The spleen of the sacrificed mice was separated with 3 ml of lymphocyte separation buffer (Daktronics Biotechnology Co., Ltd., product number DKW33-R0100), and then the separated cells were passed through a 70 micrometer (μm) filter (BD Company) to obtain single cells. Carefully suspend the single cells in 1ml RPMI1640 medium (Life Technologies Limited, Cat. No. 21870092), transfer to a 15ml centrifuge tube and centrifuge at 800g for 30 minutes without braking, carefully collect the intermediate layer, and then wash three times with RPMI1640 medium to obtain the target cell.
(3)HIV-1gag特异性T细胞反应的评估(3) Assessment of HIV-1gag-specific T cell responses
将步骤(2)得到的目标细胞用100μL RPMI1640培养液稀释到适当的浓度(通常每孔2×105细胞/100微升),并同时加入每种肽终浓度均为2μg/ml的HIV-1gag(p17和p24)B亚型多肽、C亚型多肽(均由美国国立卫生研究院提供,目录依次为8117号和8118号)和AE亚型多肽(均由吉尔生化上海有限公司合成),进行脾细胞体外刺激。Dilute the target cells obtained in step (2) with 100 μL RPMI1640 medium to an appropriate concentration (usually 2×10 5 cells/100 μL per well), and add HIV- 1gag (p17 and p24) B subtype polypeptide, C subtype polypeptide (all provided by the National Institutes of Health, catalogue No. 8117 and No. 8118) and AE subtype polypeptide (both synthesized by Gill Biochemical Shanghai Co., Ltd.), In vitro stimulation of splenocytes was performed.
阳性对照:区别在于,目标细胞用500ng/ml的佛波醇12-mystrate 13-acetate(PMA;Sigma-Aldrich)加上1μg/ml钙离子霉素刺激。Positive control: The difference is that the target cells are stimulated with 500 ng/ml of phorbol 12-mystrate 13-acetate (PMA; Sigma-Aldrich) plus 1 μg/ml of calcionin.
阴性对照:区别在于,目标细胞不加肽刺激物,只含细胞培养液(即RPMI1640培养液)。Negative control: The difference is that the target cells do not add peptide stimuli, but only contain cell culture medium (ie, RPMI1640 medium).
分别将前述的加入多肽的目标细胞、阳性对照和阴性对照的细胞在37℃,5%CO2,100%湿度条件下孵育20小时,再用ELISPOT检测(采用Diaclone的Murine IFN-γELISpotkit试剂盒,具体步骤按照试剂盒的操作方法进行)脾脏CD4+和CD8+T淋巴细胞分泌IFN-y的能力,将细胞形成的斑点显色后用免疫斑点测试仪扫描再用图像分析仪(ThermoScientific)进行实验数据分析。The aforementioned target cells, positive control and negative control cells were respectively incubated at 37°C, 5% CO 2 , and 100% humidity for 20 hours, and then detected by ELISPOT (using Diaclone's Murine IFN-γ ELISpotkit kit, The specific steps are carried out according to the operation method of the kit) the ability of spleen CD4+ and CD8+ T lymphocytes to secrete IFN-γ, the spots formed by the cells are developed and scanned with an immunospot tester, and then an image analyzer (ThermoScientific) is used to analyze the experimental data. analyze.
图6中三个病毒亚型肽库的来源于:HIV Consensus B Gag peptides Set(Cat#8117,Lot#10080196,NIH AIDS Reagent Program),HIV Consensus C Gag peptides(Cat#8118,Lot#3,NIH AIDS Reagent Program),以及HIV Consensus 01_AE Gag peptides(按照01_AE Gag的完整序列,来源于中国感染者,通过分析确定为如下氨基酸序列:Sources of the three viral subtype peptide libraries in Figure 6: HIV Consensus B Gag peptides Set (Cat#8117, Lot#10080196, NIH AIDS Reagent Program), HIV Consensus C Gag peptides (Cat#8118,
HIV 01_AE Gag P17(SEQ ID NO:12):HIV 01_AE Gag P17 (SEQ ID NO: 12):
MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPGLLETAEGCQQGCQQLQSTLKTGSEELKSLFNTVATLWCVHQRIDVKDTKEALDKIEEVQNKSQQKTQQAAAGTGSSSKVSQNYPIV;MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPGLLETAEGCQQGCQQLQSTLKTGSEELKSLFNTVATLWCVHQRIDVKDTKEALDKIEEVQNKSQQKTQQAAAGTGSSSKVSQNYPIV;
以及HIV 01_AE Gag P24(SEQ ID NO:13):and HIV 01_AE Gag P24 (SEQ ID NO: 13):
QNAQGQMVHQPVSPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTWDRTAGPIPPGQIREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIVRMYSPPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGTGATLEEMMTACQGVGGPSHKARVL。从头到尾依次合成15个氨基酸的肽,下一个与前一个有11个氨基酸的重叠,即15-mer overlap by 11的常规方法)。在BALB/c小鼠中,B亚型P24的单肽GAG[GHAQAAMQMLKETINE](SEQ ID NO:14),是针对特定的小鼠CD8+T细胞,而B亚型P24单肽GAG[TNNPPIPVGEIYKRWIILGLN](SEQ ID NO:15),是针对特定的小鼠CD4+T细胞;C/BC亚型P24的单肽GAG[GGHQAAMQMLKDTIN](SEQ ID NO:16),是针对特定的小鼠CD8+T细胞,而C/BC亚型P24单肽GAG[TSNPPVPVGDIYKRWIILGL](SEQ ID NO:17),是针对特定的小鼠CD4+T细胞;AE亚型P24的单肽GAG[GHQAAMQMLKETINE](SEQ ID NO:18)是针对特定的小鼠CD8+T细胞,而AE亚型P24单肽GAG[TNNPPIPVGDIYKRWIILGLN](SEQ ID NO:19),是针对特定的小鼠CD4+T细胞。这些肽库或单肽不同于GAG mosaic 1,2或二价HIV嵌合Gag抗原(mosaic),它们之间不是100%一致,从而能反映出本发明的疫苗的确诱导出了广谱针对三个病毒亚型的T细胞免疫反应。QNAQGQMVHQPVSPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTWDRTAGPIPPGQIREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIVRMYSPPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGTGATLEEMMTARQGVGGPS. The peptides of 15 amino acids were synthesized sequentially from the beginning to the end, and the next one had an overlap of 11 amino acids with the previous one, that is, the conventional method of 15-mer overlap by 11). In BALB/c mice, the B-subtype P24 single peptide GAG [GHAQAAMQMLKETINE] (SEQ ID NO: 14) is specific for mouse CD8+ T cells, while the B-subtype P24 single peptide GAG [TNNPPIPVGEIYKRWIILGLN] ( SEQ ID NO: 15), for specific mouse CD4+ T cells; C/BC subtype P24 single peptide GAG [GGHQAAMQMLKDTIN] (SEQ ID NO: 16), for specific mouse CD8+ T cells, The C/BC subtype P24 single peptide GAG [TSNPPVPVGDIYKRWIILGL] (SEQ ID NO: 17) is directed against specific mouse CD4+ T cells; the AE subtype P24 single peptide GAG [GHQAAMQMLKETINE] (SEQ ID NO: 18) It is directed against specific mouse CD8+ T cells, while the AE subtype P24 single peptide GAG [TNNPPIPVGDIYKRWIILGLN] (SEQ ID NO: 19) is directed against specific mouse CD4+ T cells. These peptide pools or single peptides differ from
结果如图6所示,显示出二价HIV嵌合Gag抗原(mosaic)的疫苗(pVAX-huPD1-mosaic)在小鼠模型中诱导出高水平、广谱的针对中国三种亚型(AE,B,C)的T细胞反应,同时证明了可溶性的PD1具有增强二价HIV嵌合Gag抗原的免疫原性。图中三个病毒亚型肽库的来源如上所述。The results are shown in Figure 6, showing that the bivalent HIV chimeric Gag antigen (mosaic) vaccine (pVAX-huPD1-mosaic) induced high-level, broad-spectrum targeting of three Chinese subtypes (AE, B, C) T cell responses while demonstrating that soluble PD1 enhances the immunogenicity of the bivalent HIV chimeric Gag antigen. The sources of the peptide libraries for the three viral subtypes in the figure are as described above.
实施例5:恒河猴(Rhesus macaque)实验Example 5: Rhesus macaque experiment
本实施例中使用的活体动物实验经过了佛山科学技术学院兽医实验动物伦理委员会批准。免疫实验采用四只恒河猴,分别在第0,6,12,25周进行免疫(图7A),每次免疫采用10-20mg/kg克他命进行麻醉,接着用4针电极阵列进行总共2mg二价pVAX-huPD1-mosaic核酸疫苗(即实施例3制备得到的pVAX-huPD1-mosaic的表达质粒)的肌肉电转接种。The live animal experiments used in this example were approved by the Ethics Committee of Veterinary Laboratory Animals of Foshan Institute of Science and Technology. Four rhesus monkeys were used in the immunization experiment, and they were immunized at 0, 6, 12, and 25 weeks (Fig. 7A), each immunization was anesthetized with 10-20 mg/kg ketamine, followed by a total of 4-needle electrode arrays. 2 mg of the bivalent pVAX-huPD1-mosaic nucleic acid vaccine (ie, the expression plasmid of pVAX-huPD1-mosaic prepared in Example 3) was inoculated by intramuscular electroporation.
每隔两周,用克他命和甲苯噻嗪的混合物麻醉动物后,进行采血。从血液里分离PBMC和血浆,存储于-80℃,随后用MABTECH公司的试剂盒按照其说明书操作来检测疫苗免疫反应(ELIspot Assay for Monkey Interferon-γ,MABTECH,3421M-2A)。Blood sampling was performed every two weeks after animals were anesthetized with a mixture of ketamine and xylazine. PBMC and plasma were separated from blood, stored at -80°C, and then used MABTECH's kit according to its instructions to detect vaccine immune response (ELIspot Assay for Monkey Interferon-γ, MABTECH, 3421M-2A).
结果分析:Result analysis:
(1)在恒河猴第一次免疫时(即免疫接种的第0天),没有检测出特异性的针对Gag的CD8+T细胞反应。(1) When rhesus monkeys were immunized for the first time (ie, the 0th day of immunization), no specific CD8+ T cell responses against Gag were detected.
(2)然而在第二次免疫后的两个星期(第八周)发现pVAX-huPD1-mosaic核酸疫苗诱导出了高水平的针对B亚型HIV-Gag P24的三个不重叠(no-overlapping)亚肽库PP1(肽库24-1)、PP2(肽库24-2)和PP3(肽库24-3)(Cat#8117,Lot#10080196,NIH AIDS ReagentProgram)的特异性T细胞反应(图7B),纵坐标显示分泌的斑点能增加至约2000个/106PBMC(外周血单核细胞),横坐标代表每只猴子(1至4),在免疫后的不同时间(0,8,12,14,16,25,28周)进行检测。结果证明诱导出B亚型内广谱的特异性T细胞反应。(2) However, two weeks after the second immunization (the eighth week), the pVAX-huPD1-mosaic nucleic acid vaccine was found to induce a high level of three non-overlapping (no-overlapping) antibodies against subtype B HIV-Gag P24. ) specific T cell responses of subpeptide pools PP1 (peptide pool 24-1), PP2 (peptide pool 24-2) and PP3 (peptide pool 24-3) (Cat#8117, Lot#10080196, NIH AIDS ReagentProgram) ( Figure 7B), the ordinate shows that the secreted puncta can be increased to about 2000/106 PBMCs (peripheral blood mononuclear cells), the abscissa represents each monkey (1 to 4), at different times after immunization (0,8 , 12, 14, 16, 25, 28 weeks) for testing. The results demonstrate the induction of a broad spectrum of specific T cell responses within the B subtype.
(3)随后,在第14周和第28周,二价pVAX-huPD1-mosaic核酸疫苗免疫,又诱导出了高水平的特异性针对上述B亚型HIV-Gag的三个亚肽库PP1、PP2和PP3的T细胞反应,证明免疫记忆也已经建立。(3) Subsequently, at the 14th and 28th weeks, the bivalent pVAX-huPD1-mosaic nucleic acid vaccine immunization induced a high level of three subpeptide pools PP1, T cell responses to PP2 and PP3, demonstrating that immune memory has also been established.
(4)在第25周加强免疫后的第28周,又对AE亚型、B和BC亚型的多肽库,同时进行了检测,包括了HIV-Gag P17一个肽库和P24的B亚型的三个亚肽库PP1、PP2和PP3,结果检测到对每个亚型的T细胞记忆免疫反应(图7C),其中纵坐标代表106PBMC(外周血单核细胞)分泌IFN-γT细胞的斑点数,横坐标代表每只猴子(1至4),对AE,B或BC亚型多肽库的反应测定,结果证明本发明的二价pVAX-huPD1-mosaic疫苗抗原也可以在灵长动物体内诱导出三个亚型间广谱的特异性T细胞反应。(4) In the 28th week after the booster immunization in the 25th week, the peptide libraries of AE subtype, B and BC subtypes were tested at the same time, including a peptide library of HIV-Gag P17 and B subtype of P24. The three subpeptide pools of PP1, PP2 and PP3, the results detected T cell memory immune responses to each subtype (Figure 7C), where the ordinate represents 10 6 PBMC (peripheral blood mononuclear cells) secreting IFN-γ T cells The number of spots, the abscissa represents each monkey (1 to 4), the response to the AE, B or BC subtype polypeptide pool was determined, and the results proved that the bivalent pVAX-huPD1-mosaic vaccine antigen of the present invention can also be used in primates. A broad spectrum of specific T cell responses across the three subtypes were induced in vivo.
(5)接着又进一步利用HIV-Gag的AE亚型的肽库分解分析(图7D),纵坐标显示106PBMC(外周血单核细胞)分泌IFN-γT细胞的斑点数,横坐标代表每只猴子(1至4)针对单肽(例如75、76等代表我们肽库中AE亚型单一肽的号码)的T细胞反应。从图可知每只猴子所针对的单肽T细胞反应是不一样的,提示本发明的二价huPD1-mosaic疫苗抗原符合人体使用个体差异的实际情况。AE亚型单一肽的氨基酸序列如下:(5) Next, the peptide library decomposition analysis of HIV-Gag AE subtype was further used (Fig. 7D). The ordinate shows the number of spots of IFN-γ T cells secreting IFN-γ in 10 6 PBMCs (peripheral blood mononuclear cells), and the abscissa represents each T-cell responses of monkeys (1 to 4) to single peptides (
Gag38:PRTLNAWVKVVEEKG(SEQ ID NO:20)Gag38: PRTLNAWVKVVEEKG (SEQ ID NO: 20)
Gag41:EKGFNPEVIPMFSAL(SEQ ID NO:21)Gag41: EKGFNPEVIPMFSAL (SEQ ID NO: 21)
Gag42:NPEVIPMFSALSEGA(SEQ ID NO:22)Gag42: NPEVIPMFSALSEGA (SEQ ID NO: 22)
Gag49:GHQAAMQMLKETINE(SEQ ID NO:23)Gag49: GHQAAMQMLKETINE (SEQ ID NO: 23)
Gag50:AMQMLKETINEEAAD(SEQ ID NO:24)Gag50: AMQMLKETINEEAAD (SEQ ID NO: 24)
Gag66:IYKRWIILGLNKIVR(SEQ ID NO:25)Gag66: IYKRWIILGLNKIVR (SEQ ID NO: 25)
Gag68:GLNKIVRMYSPVSIL(SEQ ID NO:26)Gag68: GLNKIVRMYSPVSIL (SEQ ID NO: 26)
Gag75:VDRFYKTLRAEQATQ(SEQ ID NO:27)Gag75: VDRFYKTLRAEQATQ (SEQ ID NO: 27)
Gag76:YKTLRAEQATQEVKN(SEQ ID NO:28)Gag76: YKTLRAEQATQEVKN (SEQ ID NO: 28)
实施例6:临床样品实验Example 6: Clinical Sample Experiment
本实施例研究二价HIV嵌合Gag抗原在HIV自然感染中的实际反应性能,合成了二价HIV嵌合Gag抗原的肽库Mosaic p41-1(SEQ ID NO:3)和Mosaic p41-2(SEQ ID NO:4)分别用于检测中国自然感染HIV病人的T细胞ELISPOT反应。检测采用MABTECH公司的货号为3420-2A的Human IFN-g ELISpotBASIC(ALP)检测试剂盒进行,步骤按照配套的试剂盒说明书进行。接受抗病毒联合药物治疗的病人PBMC(外周血单核细胞)样本数量n=9,没有接受治疗的对照病人PBMC(外周血单核细胞)样本数量n=17。In this example, the actual reaction performance of the bivalent HIV chimeric Gag antigen in HIV natural infection was studied, and the peptide libraries Mosaic p41-1 (SEQ ID NO: 3) and Mosaic p41-2 ( SEQ ID NO: 4) were respectively used to detect the T cell ELISPOT response of Chinese naturally infected HIV patients. The detection was carried out using the Human IFN-g ELISpot BASIC (ALP) detection kit with the product number 3420-2A of MABTECH Company, and the steps were carried out according to the instructions of the supporting kit. The number of PBMC (peripheral blood mononuclear cells) samples of patients receiving antiviral combined drug treatment was n=9, and the number of PBMC (peripheral blood mononuclear cells) samples of control patients who did not receive treatment was n=17.
结果如图8所示,横坐标1-26分别代表每个病人,其中1-17代表没有接受治疗的对照病人,18-26代表接受抗病毒联合药物治疗的病人,纵坐标代表针对二价HIV嵌合Gag抗原的两个肽库Mosaic p41-1和Mosaic p41-2,106PBMC(外周血单核细胞)中分泌IFN-γ的T细胞的斑点数。The results are shown in Figure 8. The abscissas 1-26 represent each patient, of which 1-17 represent control patients who did not receive treatment, 18-26 represent patients who received antiviral combination therapy, and the ordinate represents bivalent HIV Two peptide pools of chimeric Gag antigens, Mosaic p41-1 and Mosaic p41-2, the number of spots of IFN-γ secreting T cells in 10 6 PBMCs (peripheral blood mononuclear cells).
结果分析:Result analysis:
(1)在没有接受治疗对照病人中,有广泛的针对Mosaic p41-1肽库(13/17,76%)和Mosaic p41-2肽库(7/17,41%)的ELISPOT反应(以SFU>200计算)(SFU:spot-formingunit,斑点形成单位),而总体反应率(对Mosaic p41-1或Mosaic p41-2有阳性反应)达到94.1%(16/17),因此基于本发明的二价HIV嵌合Gag抗原的疫苗可以成为HIV预防和临床治疗的候选疫苗。(1) There was a broad ELISPOT response against the Mosaic p41-1 peptide pool (13/17, 76%) and the Mosaic p41-2 peptide pool (7/17, 41%) in untreated control patients (in SFU >200 counts) (SFU: spot-forming unit, spot-forming unit), while the overall response rate (positive for Mosaic p41-1 or Mosaic p41-2) reached 94.1% (16/17), so based on the present invention's two Vaccines with chimeric HIV chimeric Gag antigens can be candidates for HIV prevention and clinical treatment.
(2)在接受抗病毒联合药物治疗的病人中,体内没有可以检测到的病毒,T细胞ELISPOT反应率要低于没有接受治疗的对照病人,总体反应率只有22%(2/9)。由此可见,本发明的二价HIV嵌合Gag抗原疫苗可用来加强治疗后的病人的抗HIV的广谱T细胞免疫反应,以促成免疫治疗。(2) In patients who received antiviral combination therapy, there was no detectable virus in the body, and the T cell ELISPOT response rate was lower than that of control patients who did not receive treatment, and the overall response rate was only 22% (2/9). Thus, it can be seen that the bivalent HIV chimeric Gag antigen vaccine of the present invention can be used to enhance the broad-spectrum T cell immune response against HIV in the treated patient to facilitate immunotherapy.
以上内容是结合具体的实施方式对本申请所作的进一步详细说明,不能认定本申请的具体实施只局限于这些说明。对于本申请所属技术领域的普通技术人员来说,在不脱离本申请构思的前提下,还可以做出若干简单推演或替换,都应当视为属于本申请的保护范围。The above content is a further detailed description of the present application in conjunction with specific embodiments, and it cannot be considered that the specific implementation of the present application is limited to these descriptions. For those of ordinary skill in the technical field of the present application, without departing from the concept of the present application, some simple deductions or substitutions can be made, which should be regarded as belonging to the protection scope of the present application.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 艾克尔免疫愈疗有限公司<110> Acker Immune Healing Co., Ltd.
<120> HIV嵌合抗原、制备方法及应用<120> HIV chimeric antigen, preparation method and application
<130> 16PA0176CN.B1<130> 16PA0176CN.B1
<160> 28<160> 28
<170> PatentIn version 3.3<170> PatentIn version 3.3
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<211> 1089<211> 1089
<212> DNA<212> DNA
<213> human<213> human
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atgggggcaa gagcctccgt gctgtctggc gggaaactgg acgcctggga gaagatccgg 60atgggggcaa gagcctccgt gctgtctggc gggaaactgg acgcctggga gaagatccgg 60
ctgagaccag gaggcaagaa aaagtaccgc ctgaagcaca tcgtgtgggc atcccgcgaa 120ctgagaccag gaggcaagaa aaagtaccgc ctgaagcaca tcgtgtgggc atcccgcgaa 120
ctggagcgat tcgccctgaa cccaggactg ctggaaaccg cagagggatg ccagcagatc 180ctggagcgat tcgccctgaa cccaggactg ctggaaaccg cagagggatg ccagcagatc 180
attgagcagc tgcagtctac actgaaaact ggctccgagg aactgaagtc tctgtttaac 240attgagcagc tgcagtctac actgaaaact ggctccgagg aactgaagtc tctgtttaac 240
accatcgctg tgctgtggtg cgtgcatcag cgcattgacg tgaaggatac aaaagaggcc 300accatcgctg tgctgtggtg cgtgcatcag cgcattgacg tgaaggatac aaaagaggcc 300
ctggacaaga tcgaggaagt gcagaacaag tcacagcaga agactcagca ggccgctgca 360ctggacaaga tcgaggaagt gcagaacaag tcacagcaga agactcagca ggccgctgca 360
ggaaccggaa gctcctctaa ggtgagccag aactatccca ttgtccagaa tgcacaggga 420ggaaccggaa gctcctctaa ggtgagccag aactatccca ttgtccagaa tgcacaggga 420
cagatggtgc accagccact gagccctcgg accctgaacg catgggtgaa agtggtcgag 480cagatggtgc accagccact gagccctcgg accctgaacg catgggtgaa agtggtcgag 480
gaaaagggct tcaatcctga agtcatccca atgtttagtg cactgtcaga gggggccaca 540gaaaagggct tcaatcctga agtcatccca atgtttagtg cactgtcaga gggggccaca 540
cctcaggatc tgaacatgat gctgaatatc gtggggggac atcaggccgc tatgcagatg 600cctcaggatc tgaacatgat gctgaatatc gtggggggac atcaggccgc tatgcagatg 600
ctgaaggaaa ctattaatga ggaagcagca gagtgggacc gagtgcaccc agtccatgca 660ctgaaggaaa ctattaatga ggaagcagca gagtgggacc gagtgcaccc agtccatgca 660
ggaccaatcc cacctggaca gattcgagaa ccacgaggat ccgatatcgc cggcaccaca 720ggaccaatcc cacctggaca gattcgagaa ccacgaggat ccgatatcgc cggcaccaca 720
tctactctgc aggagcagat tgggtggatg accaacaatc cacccatccc tgtgggagac 780tctactctgc aggagcagat tgggtggatg accaacaatc cacccatccc tgtgggagac 780
atctacaaac gctggatcat tctgggcctg aacaagatcg tgcgaatgta tagcccagtc 840atctacaaac gctggatcat tctgggcctg aacaagatcg tgcgaatgta tagcccagtc 840
tccatcctgg atattcggca gggaccaaaa gagcccttca gggactacgt ggatcgcttt 900tccatcctgg atattcggca gggaccaaaa gagcccttca gggactacgt ggatcgcttt 900
tataagacac tgagagcaga acaggccact caggaggtga aaaattggat gacagagact 960tataagacac tgagagcaga acaggccact caggaggtga aaaattggat gacagagact 960
ctgctggtcc agaacgccaa tcctgactgc aaatctattc tgaaggctct ggggaccgga 1020ctgctggtcc agaacgccaa tcctgactgc aaatctattc tgaaggctct ggggaccgga 1020
gcaacactgg aggaaatgat gaccgcttgt cagggagtgg gaggaccagg acacaaggca 1080gcaacactgg aggaaatgat gaccgcttgt cagggagtgg gaggaccagg acacaaggca 1080
agggtcctg 1089agggtcctg 1089
<210> 2<210> 2
<211> 1089<211> 1089
<212> DNA<212> DNA
<213> human<213> human
<400> 2<400> 2
atgggcgccc gagccagcat cctgcgggga ggcaagctgg ataaatggga gaagattagg 60atgggcgccc gagccagcat cctgcgggga ggcaagctgg ataaatggga gaagattagg 60
ctgcgccccg ggggaaaaaa gcactacatg ctgaagcatc tggtgtgggc ttctcgggaa 120ctgcgccccg ggggaaaaaa gcactacatg ctgaagcatc tggtgtgggc ttctcgggaa 120
ctggagagat tcgcagtcaa cccaggcctg ctggaaacca gtgaggggtg caaacagatc 180ctggagagat tcgcagtcaa cccaggcctg ctggaaacca gtgaggggtg caaacagatc 180
attaagcagc tgcagcccgc tctgcagacc ggaacagagg aactgcgcag tctgtttaac 240attaagcagc tgcagcccgc tctgcagacc ggaacagagg aactgcgcag tctgtttaac 240
actgtggcca ccctgtactg cgtgcaccag cgaatcgaga tcaaggacac aaaggaggcc 300actgtggcca ccctgtactg cgtgcaccag cgaatcgaga tcaaggacac aaaggaggcc 300
ctggataaaa tcgaggaaga gcagaataag tccaaaaaga aagctcagca gacagctgca 360ctggataaaa tcgaggaaga gcagaataag tccaaaaaga aagctcagca gacagctgca 360
gatactggaa acaattctca ggtgagtcag aactatccaa tcgtccagaa tctgcagggc 420gatactggaa acaattctca ggtgagtcag aactatccaa tcgtccagaa tctgcagggc 420
cagatggtgc accagcctat tagcccaaga accctgaacg cctgggtgaa agtggtcgaa 480cagatggtgc accagcctat tagcccaaga accctgaacg cctgggtgaa agtggtcgaa 480
gagaaggctt tcagccccga agtcatccct atgtttaccg ccctgtccga gggagctaca 540gagaaggctt tcagccccga agtcatccct atgtttaccg ccctgtccga gggagctaca 540
cctcaggacc tgaacaccat gctgaataca gtgggcgggc accaggctgc tatgcagatc 600cctcaggacc tgaacaccat gctgaataca gtgggcgggc accaggctgc tatgcagatc 600
ctgaaggaca ctattaatga agaggcagcc gagtgggata ggctgcaccc agtgcatgca 660ctgaaggaca ctattaatga agaggcagcc gagtgggata ggctgcaccc agtgcatgca 660
ggaccagtcg ctcctggaca gatgagagaa cctaggggaa gtgatatcgc cggcactacc 720ggaccagtcg ctcctggaca gatgagagaa cctaggggaa gtgatatcgc cggcactacc 720
tcaaacctgc aggagcagat tggctggatg acaagcaatc ctccaatccc cgtgggggaa 780tcaaacctgc aggagcagat tggctggatg acaagcaatc ctccaatccc cgtgggggaa 780
atctacaaaa gatggatcat tctgggactg aacaagatcg tgaggatgta ttcacctact 840atctacaaaa gatggatcat tctgggactg aacaagatcg tgaggatgta ttcacctact 840
agcatcctgg acatcaagca ggggccaaag gagcccttca gagactatgt ggataggttc 900agcatcctgg acatcaagca ggggccaaag gagcccttca gagactatgt ggataggttc 900
tttaagaccc tgagagctga acaggcatcc caggacgtga aaaattggat gactgatacc 960tttaagaccc tgagagctga acaggcatcc caggacgtga aaaattggat gactgatacc 960
ctgctggtcc agaacgcaaa tcctgattgc aaaacaatcc tgaaggccct gggcccagct 1020ctgctggtcc agaacgcaaa tcctgattgc aaaacaatcc tgaaggccct gggcccagct 1020
gcaactctgg aggagatgat gaccgcttgc cagggcgtgg gaggaccttc acataaagcc 1080gcaactctgg aggagatgat gaccgcttgc cagggcgtgg gaggaccttc acataaagcc 1080
agagtgctg 1089agagtgctg 1089
<210> 3<210> 3
<211> 363<211> 363
<212> PRT<212> PRT
<213> human<213> human
<400> 3<400> 3
Met Gly Ala Arg Ala Ser Val Leu Ser Gly Gly Lys Leu Asp Ala TrpMet Gly Ala Arg Ala Ser Val Leu Ser Gly Gly Lys Leu Asp Ala Trp
1 5 10 151 5 10 15
Glu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys Lys Tyr Arg Leu LysGlu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys Lys Tyr Arg Leu Lys
20 25 30 20 25 30
His Ile Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Leu Asn ProHis Ile Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Leu Asn Pro
35 40 45 35 40 45
Gly Leu Leu Glu Thr Ala Glu Gly Cys Gln Gln Ile Ile Glu Gln LeuGly Leu Leu Glu Thr Ala Glu Gly Cys Gln Gln Ile Ile Glu Gln Leu
50 55 60 50 55 60
Gln Ser Thr Leu Lys Thr Gly Ser Glu Glu Leu Lys Ser Leu Phe AsnGln Ser Thr Leu Lys Thr Gly Ser Glu Glu Leu Lys Ser Leu Phe Asn
65 70 75 8065 70 75 80
Thr Ile Ala Val Leu Trp Cys Val His Gln Arg Ile Asp Val Lys AspThr Ile Ala Val Leu Trp Cys Val His Gln Arg Ile Asp Val Lys Asp
85 90 95 85 90 95
Thr Lys Glu Ala Leu Asp Lys Ile Glu Glu Val Gln Asn Lys Ser GlnThr Lys Glu Ala Leu Asp Lys Ile Glu Glu Val Gln Asn Lys Ser Gln
100 105 110 100 105 110
Gln Lys Thr Gln Gln Ala Ala Ala Gly Thr Gly Ser Ser Ser Lys ValGln Lys Thr Gln Gln Ala Ala Ala Gly Thr Gly Ser Ser Ser Lys Val
115 120 125 115 120 125
Ser Gln Asn Tyr Pro Ile Val Gln Asn Ala Gln Gly Gln Met Val HisSer Gln Asn Tyr Pro Ile Val Gln Asn Ala Gln Gly Gln Met Val His
130 135 140 130 135 140
Gln Pro Leu Ser Pro Arg Thr Leu Asn Ala Trp Val Lys Val Val GluGln Pro Leu Ser Pro Arg Thr Leu Asn Ala Trp Val Lys Val Val Glu
145 150 155 160145 150 155 160
Glu Lys Gly Phe Asn Pro Glu Val Ile Pro Met Phe Ser Ala Leu SerGlu Lys Gly Phe Asn Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser
165 170 175 165 170 175
Glu Gly Ala Thr Pro Gln Asp Leu Asn Met Met Leu Asn Ile Val GlyGlu Gly Ala Thr Pro Gln Asp Leu Asn Met Met Leu Asn Ile Val Gly
180 185 190 180 185 190
Gly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu GluGly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu Glu
195 200 205 195 200 205
Ala Ala Glu Trp Asp Arg Val His Pro Val His Ala Gly Pro Ile ProAla Ala Glu Trp Asp Arg Val His Pro Val His Ala Gly Pro Ile Pro
210 215 220 210 215 220
Pro Gly Gln Ile Arg Glu Pro Arg Gly Ser Asp Ile Ala Gly Thr ThrPro Gly Gln Ile Arg Glu Pro Arg Gly Ser Asp Ile Ala Gly Thr Thr
225 230 235 240225 230 235 240
Ser Thr Leu Gln Glu Gln Ile Gly Trp Met Thr Asn Asn Pro Pro IleSer Thr Leu Gln Glu Gln Ile Gly Trp Met Thr Asn Asn Pro Pro Ile
245 250 255 245 250 255
Pro Val Gly Asp Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn LysPro Val Gly Asp Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys
260 265 270 260 265 270
Ile Val Arg Met Tyr Ser Pro Val Ser Ile Leu Asp Ile Arg Gln GlyIle Val Arg Met Tyr Ser Pro Val Ser Ile Leu Asp Ile Arg Gln Gly
275 280 285 275 280 285
Pro Lys Glu Pro Phe Arg Asp Tyr Val Asp Arg Phe Tyr Lys Thr LeuPro Lys Glu Pro Phe Arg Asp Tyr Val Asp Arg Phe Tyr Lys Thr Leu
290 295 300 290 295 300
Arg Ala Glu Gln Ala Thr Gln Glu Val Lys Asn Trp Met Thr Glu ThrArg Ala Glu Gln Ala Thr Gln Glu Val Lys Asn Trp Met Thr Glu Thr
305 310 315 320305 310 315 320
Leu Leu Val Gln Asn Ala Asn Pro Asp Cys Lys Ser Ile Leu Lys AlaLeu Leu Val Gln Asn Ala Asn Pro Asp Cys Lys Ser Ile Leu Lys Ala
325 330 335 325 330 335
Leu Gly Thr Gly Ala Thr Leu Glu Glu Met Met Thr Ala Cys Gln GlyLeu Gly Thr Gly Ala Thr Leu Glu Glu Met Met Thr Ala Cys Gln Gly
340 345 350 340 345 350
Val Gly Gly Pro Gly His Lys Ala Arg Val LeuVal Gly Gly Pro Gly His Lys Ala Arg Val Leu
355 360 355 360
<210> 4<210> 4
<211> 363<211> 363
<212> PRT<212> PRT
<213> human<213> human
<400> 4<400> 4
Met Gly Ala Arg Ala Ser Ile Leu Arg Gly Gly Lys Leu Asp Lys TrpMet Gly Ala Arg Ala Ser Ile Leu Arg Gly Gly Lys Leu Asp Lys Trp
1 5 10 151 5 10 15
Glu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys His Tyr Met Leu LysGlu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys His Tyr Met Leu Lys
20 25 30 20 25 30
His Leu Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Val Asn ProHis Leu Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Val Asn Pro
35 40 45 35 40 45
Gly Leu Leu Glu Thr Ser Glu Gly Cys Lys Gln Ile Ile Lys Gln LeuGly Leu Leu Glu Thr Ser Glu Gly Cys Lys Gln Ile Ile Lys Gln Leu
50 55 60 50 55 60
Gln Pro Ala Leu Gln Thr Gly Thr Glu Glu Leu Arg Ser Leu Phe AsnGln Pro Ala Leu Gln Thr Gly Thr Glu Glu Leu Arg Ser Leu Phe Asn
65 70 75 8065 70 75 80
Thr Val Ala Thr Leu Tyr Cys Val His Gln Arg Ile Glu Ile Lys AspThr Val Ala Thr Leu Tyr Cys Val His Gln Arg Ile Glu Ile Lys Asp
85 90 95 85 90 95
Thr Lys Glu Ala Leu Asp Lys Ile Glu Glu Glu Gln Asn Lys Ser LysThr Lys Glu Ala Leu Asp Lys Ile Glu Glu Glu Gln Asn Lys Ser Lys
100 105 110 100 105 110
Lys Lys Ala Gln Gln Thr Ala Ala Asp Thr Gly Asn Asn Ser Gln ValLys Lys Ala Gln Gln Thr Ala Ala Asp Thr Gly Asn Asn Ser Gln Val
115 120 125 115 120 125
Ser Gln Asn Tyr Pro Ile Val Gln Asn Leu Gln Gly Gln Met Val HisSer Gln Asn Tyr Pro Ile Val Gln Asn Leu Gln Gly Gln Met Val His
130 135 140 130 135 140
Gln Pro Ile Ser Pro Arg Thr Leu Asn Ala Trp Val Lys Val Val GluGln Pro Ile Ser Pro Arg Thr Leu Asn Ala Trp Val Lys Val Val Glu
145 150 155 160145 150 155 160
Glu Lys Ala Phe Ser Pro Glu Val Ile Pro Met Phe Thr Ala Leu SerGlu Lys Ala Phe Ser Pro Glu Val Ile Pro Met Phe Thr Ala Leu Ser
165 170 175 165 170 175
Glu Gly Ala Thr Pro Gln Asp Leu Asn Thr Met Leu Asn Thr Val GlyGlu Gly Ala Thr Pro Gln Asp Leu Asn Thr Met Leu Asn Thr Val Gly
180 185 190 180 185 190
Gly His Gln Ala Ala Met Gln Ile Leu Lys Asp Thr Ile Asn Glu GluGly His Gln Ala Ala Met Gln Ile Leu Lys Asp Thr Ile Asn Glu Glu
195 200 205 195 200 205
Ala Ala Glu Trp Asp Arg Leu His Pro Val His Ala Gly Pro Val AlaAla Ala Glu Trp Asp Arg Leu His Pro Val His Ala Gly Pro Val Ala
210 215 220 210 215 220
Pro Gly Gln Met Arg Glu Pro Arg Gly Ser Asp Ile Ala Gly Thr ThrPro Gly Gln Met Arg Glu Pro Arg Gly Ser Asp Ile Ala Gly Thr Thr
225 230 235 240225 230 235 240
Ser Asn Leu Gln Glu Gln Ile Gly Trp Met Thr Ser Asn Pro Pro IleSer Asn Leu Gln Glu Gln Ile Gly Trp Met Thr Ser Asn Pro Pro Ile
245 250 255 245 250 255
Pro Val Gly Glu Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn LysPro Val Gly Glu Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys
260 265 270 260 265 270
Ile Val Arg Met Tyr Ser Pro Thr Ser Ile Leu Asp Ile Lys Gln GlyIle Val Arg Met Tyr Ser Pro Thr Ser Ile Leu Asp Ile Lys Gln Gly
275 280 285 275 280 285
Pro Lys Glu Pro Phe Arg Asp Tyr Val Asp Arg Phe Phe Lys Thr LeuPro Lys Glu Pro Phe Arg Asp Tyr Val Asp Arg Phe Phe Lys Thr Leu
290 295 300 290 295 300
Arg Ala Glu Gln Ala Ser Gln Asp Val Lys Asn Trp Met Thr Asp ThrArg Ala Glu Gln Ala Ser Gln Asp Val Lys Asn Trp Met Thr Asp Thr
305 310 315 320305 310 315 320
Leu Leu Val Gln Asn Ala Asn Pro Asp Cys Lys Thr Ile Leu Lys AlaLeu Leu Val Gln Asn Ala Asn Pro Asp Cys Lys Thr Ile Leu Lys Ala
325 330 335 325 330 335
Leu Gly Pro Ala Ala Thr Leu Glu Glu Met Met Thr Ala Cys Gln GlyLeu Gly Pro Ala Ala Thr Leu Glu Glu Met Met Thr Ala Cys Gln Gly
340 345 350 340 345 350
Val Gly Gly Pro Ser His Lys Ala Arg Val LeuVal Gly Gly Pro Ser His Lys Ala Arg Val Leu
355 360 355 360
<210> 5<210> 5
<211> 2928<211> 2928
<212> DNA<212> DNA
<213> 人造序列<213> Artificial Sequences
<400> 5<400> 5
atggacgcca tgctgcgcgg actgtgctgc gtgctgctac tgtgcggcgc cgtgttcgtg 60atggacgcca tgctgcgcgg actgtgctgc gtgctgctac tgtgcggcgc cgtgttcgtg 60
agccccagcc aggagatcca cgcccgattc aggagaggag ccagaggagg atccatgcag 120agccccagcc aggagatcca cgcccgattc aggagaggag ccagaggagg atccatgcag 120
attcctcagg ctccatggcc tgtggtgtgg gcagtgctgc agctgggatg gagaccagga 180attcctcagg ctccatggcc tgtggtgtgg gcagtgctgc agctgggatg gagaccagga 180
tggttcctgg actcccctga cagaccatgg aatcccccta cattttctcc tgcactgctg 240tggttcctgg actcccctga cagaccatgg aatcccccta cattttctcc tgcactgctg 240
gtggtgactg agggcgataa cgccaccttc acatgcagct tttccaacac ttctgaaagt 300gtggtgactg agggcgataa cgccaccttc acatgcagct tttccaacac ttctgaaagt 300
ttcgtcctga attggtacag gatgtcaccc agcaaccaga ctgacaagct ggccgctttt 360ttcgtcctga attggtacag gatgtcaccc agcaaccaga ctgacaagct ggccgctttt 360
cccgaagacc gctcccagcc tgggcaagat tgccgattcc gggtgacaca gctgcctaat 420cccgaagacc gctcccagcc tgggcaagat tgccgattcc gggtgacaca gctgcctaat 420
ggaagggact ttcacatgag tgtggtccgc gctcggagaa acgattcagg aacctatctg 480ggaagggact ttcacatgag tgtggtccgc gctcggagaa acgattcagg aacctatctg 480
tgtggcgcaa tcagcctggc ccctaagaca cagatcaagg agagcctgag agccgaactg 540tgtggcgcaa tcagcctggc ccctaagaca cagatcaagg agagcctgag agccgaactg 540
agggtgactg agaggcgcgc tgaagtccca accgcacatc cttccccatc tccccgacca 600agggtgactg agaggcgcgc tgaagtccca accgcacatc cttccccatc tccccgacca 600
gcaggacagg aattccgggg aggcggggga agtggaggag gaggatccgg aggaggagga 660gcaggacagg aattccgggg aggcggggga agtggaggag gaggatccgg aggaggagga 660
agcatggggg caagagcctc cgtgctgtct ggcgggaaac tggacgcctg ggagaagatc 720agcatggggg caagagcctc cgtgctgtct ggcgggaaac tggacgcctg ggagaagatc 720
cggctgagac caggaggcaa gaaaaagtac cgcctgaagc acatcgtgtg ggcatcccgc 780cggctgagac caggaggcaa gaaaaagtac cgcctgaagc acatcgtgtg ggcatcccgc 780
gaactggagc gattcgccct gaacccagga ctgctggaaa ccgcagaggg atgccagcag 840gaactggagc gattcgccct gaacccagga ctgctggaaa ccgcagaggg atgccagcag 840
atcattgagc agctgcagtc tacactgaaa actggctccg aggaactgaa gtctctgttt 900atcattgagc agctgcagtc tacactgaaa actggctccg aggaactgaa gtctctgttt 900
aacaccatcg ctgtgctgtg gtgcgtgcat cagcgcattg acgtgaagga tacaaaagag 960aacaccatcg ctgtgctgtg gtgcgtgcat cagcgcattg acgtgaagga tacaaaagag 960
gccctggaca agatcgagga agtgcagaac aagtcacagc agaagactca gcaggccgct 1020gccctggaca agatcgagga agtgcagaac aagtcacagc agaagactca gcaggccgct 1020
gcaggaaccg gaagctcctc taaggtgagc cagaactatc ccattgtcca gaatgcacag 1080gcaggaaccg gaagctcctc taaggtgagc cagaactatc ccattgtcca gaatgcacag 1080
ggacagatgg tgcaccagcc actgagccct cggaccctga acgcatgggt gaaagtggtc 1140ggacagatgg tgcaccagcc actgagccct cggaccctga acgcatgggt gaaagtggtc 1140
gaggaaaagg gcttcaatcc tgaagtcatc ccaatgttta gtgcactgtc agagggggcc 1200gaggaaaagg gcttcaatcc tgaagtcatc ccaatgttta gtgcactgtc agagggggcc 1200
acacctcagg atctgaacat gatgctgaat atcgtggggg gacatcaggc cgctatgcag 1260acacctcagg atctgaacat gatgctgaat atcgtggggg gacatcaggc cgctatgcag 1260
atgctgaagg aaactattaa tgaggaagca gcagagtggg accgagtgca cccagtccat 1320atgctgaagg aaactattaa tgaggaagca gcagagtggg accgagtgca cccagtccat 1320
gcaggaccaa tcccacctgg acagattcga gaaccacgag gatccgatat cgccggcacc 1380gcaggaccaa tcccacctgg acagattcga gaaccacgag gatccgatat cgccggcacc 1380
acatctactc tgcaggagca gattgggtgg atgaccaaca atccacccat ccctgtggga 1440acatctactc tgcaggagca gattgggtgg atgaccaaca atccacccat ccctgtggga 1440
gacatctaca aacgctggat cattctgggc ctgaacaaga tcgtgcgaat gtatagccca 1500gacatctaca aacgctggat cattctgggc ctgaacaaga tcgtgcgaat gtatagccca 1500
gtctccatcc tggatattcg gcagggacca aaagagccct tcagggacta cgtggatcgc 1560gtctccatcc tggatattcg gcagggacca aaagagccct tcagggacta cgtggatcgc 1560
ttttataaga cactgagagc agaacaggcc actcaggagg tgaaaaattg gatgacagag 1620ttttataaga cactgagagc agaacaggcc actcaggagg tgaaaaattg gatgacagag 1620
actctgctgg tccagaacgc caatcctgac tgcaaatcta ttctgaaggc tctggggacc 1680actctgctgg tccagaacgc caatcctgac tgcaaatcta ttctgaaggc tctggggacc 1680
ggagcaacac tggaggaaat gatgaccgct tgtcagggag tgggaggacc aggacacaag 1740ggagcaacac tggaggaaat gatgaccgct tgtcagggag tgggaggacc aggacacaag 1740
gcaagggtcc tgggaggcgg gggaagtgga ggaggaggat ccggaggagg aggaagcatg 1800gcaagggtcc tgggaggcgg gggaagtgga ggaggaggat ccggaggagg aggaagcatg 1800
ggcgcccgag ccagcatcct gcggggaggc aagctggata aatgggagaa gattaggctg 1860ggcgcccgag ccagcatcct gcggggaggc aagctggata aatgggagaa gattaggctg 1860
cgccccgggg gaaaaaagca ctacatgctg aagcatctgg tgtgggcttc tcgggaactg 1920cgccccgggg gaaaaaagca ctacatgctg aagcatctgg tgtgggcttc tcgggaactg 1920
gagagattcg cagtcaaccc aggcctgctg gaaaccagtg aggggtgcaa acagatcatt 1980gagagattcg cagtcaaccc aggcctgctg gaaaccagtg aggggtgcaa acagatcatt 1980
aagcagctgc agcccgctct gcagaccgga acagaggaac tgcgcagtct gtttaacact 2040aagcagctgc agcccgctct gcagaccgga aacagaggaac tgcgcagtct gtttaacact 2040
gtggccaccc tgtactgcgt gcaccagcga atcgagatca aggacacaaa ggaggccctg 2100gtggccaccc tgtactgcgt gcaccagcga atcgagatca aggacacaaa ggaggccctg 2100
gataaaatcg aggaagagca gaataagtcc aaaaagaaag ctcagcagac agctgcagat 2160gataaaatcg aggaagagca gaataagtcc aaaaagaaag ctcagcagac agctgcagat 2160
actggaaaca attctcaggt gagtcagaac tatccaatcg tccagaatct gcagggccag 2220actggaaaca attctcaggt gagtcagaac tatccaatcg tccagaatct gcagggccag 2220
atggtgcacc agcctattag cccaagaacc ctgaacgcct gggtgaaagt ggtcgaagag 2280atggtgcacc agcctattag cccaagaacc ctgaacgcct gggtgaaagt ggtcgaagag 2280
aaggctttca gccccgaagt catccctatg tttaccgccc tgtccgaggg agctacacct 2340aaggctttca gccccgaagt catccctatg tttaccgccc tgtccgaggg agctacacct 2340
caggacctga acaccatgct gaatacagtg ggcgggcacc aggctgctat gcagatcctg 2400caggacctga acaccatgct gaatacagtg ggcgggcacc aggctgctat gcagatcctg 2400
aaggacacta ttaatgaaga ggcagccgag tgggataggc tgcacccagt gcatgcagga 2460aaggacacta ttaatgaaga ggcagccgag tgggataggc tgcacccagt gcatgcagga 2460
ccagtcgctc ctggacagat gagagaacct aggggaagtg atatcgccgg cactacctca 2520ccagtcgctc ctggacagat gagagaacct aggggaagtg atatcgccgg cactacctca 2520
aacctgcagg agcagattgg ctggatgaca agcaatcctc caatccccgt gggggaaatc 2580aacctgcagg agcagattgg ctggatgaca agcaatcctc caatccccgt gggggaaatc 2580
tacaaaagat ggatcattct gggactgaac aagatcgtga ggatgtattc acctactagc 2640tacaaaagat ggatcattct gggactgaac aagatcgtga ggatgtattc acctactagc 2640
atcctggaca tcaagcaggg gccaaaggag cccttcagag actatgtgga taggttcttt 2700atcctggaca tcaagcaggg gccaaaggag cccttcagag actatgtgga taggttcttt 2700
aagaccctga gagctgaaca ggcatcccag gacgtgaaaa attggatgac tgataccctg 2760aagaccctga gagctgaaca ggcatcccag gacgtgaaaa attggatgac tgataccctg 2760
ctggtccaga acgcaaatcc tgattgcaaa acaatcctga aggccctggg cccagctgca 2820ctggtccaga acgcaaatcc tgattgcaaa acaatcctga aggccctggg cccagctgca 2820
actctggagg agatgatgac cgcttgccag ggcgtgggag gaccttcaca taaagccaga 2880actctggagg agatgatgac cgcttgccag ggcgtgggag gaccttcaca taaagccaga 2880
gtgctgtgat aaccgctcga gcggccggcg cgccgtttaa acaaagct 2928gtgctgtgat aaccgctcga gcggccggcg cgccgtttaa acaaagct 2928
<210> 6<210> 6
<211> 495<211> 495
<212> DNA<212> DNA
<213> human<213> human
<400> 6<400> 6
atgcagattc ctcaggctcc atggcctgtg gtgtgggcag tgctgcagct gggatggaga 60atgcagattc ctcaggctcc atggcctgtg gtgtgggcag tgctgcagct gggatggaga 60
ccaggatggt tcctggactc ccctgacaga ccatggaatc cccctacatt ttctcctgca 120ccaggatggt tcctggactc ccctgacaga ccatggaatc cccctacatt ttctcctgca 120
ctgctggtgg tgactgaggg cgataacgcc accttcacat gcagcttttc caacacttct 180ctgctggtgg tgactgaggg cgataacgcc accttcacat gcagcttttc caacacttct 180
gaaagtttcg tcctgaattg gtacaggatg tcacccagca accagactga caagctggcc 240gaaagtttcg tcctgaattg gtacaggatg tcacccagca accagactga caagctggcc 240
gcttttcccg aagaccgctc ccagcctggg caagattgcc gattccgggt gacacagctg 300gcttttcccg aagaccgctc ccagcctggg caagattgcc gattccgggt gacacagctg 300
cctaatggaa gggactttca catgagtgtg gtccgcgctc ggagaaacga ttcaggaacc 360cctaatggaa gggactttca catgagtgtg gtccgcgctc ggagaaacga ttcaggaacc 360
tatctgtgtg gcgcaatcag cctggcccct aagacacaga tcaaggagag cctgagagcc 420tatctgtgtg gcgcaatcag cctggcccct aagacacaga tcaaggagag cctgagagcc 420
gaactgaggg tgactgagag gcgcgctgaa gtcccaaccg cacatccttc cccatctccc 480gaactgaggg tgactgagag gcgcgctgaa gtcccaaccg cacatccttc cccatctccc 480
cgaccagcag gacag 495cgaccagcag gacag 495
<210> 7<210> 7
<211> 45<211> 45
<212> DNA<212> DNA
<213> 人造序列<213> Artificial Sequences
<400> 7<400> 7
ggaggcgggg gaagtggagg aggaggatcc ggaggaggag gaagc 45ggaggcgggg gaagtggagg aggaggatcc ggaggaggag gaagc 45
<210> 8<210> 8
<211> 75<211> 75
<212> DNA<212> DNA
<213> 人造序列<213> Artificial Sequences
<400> 8<400> 8
ccggaattcc ggggaggcgg gggaagtgga ggaggaggat ccggaggagg aggaagcatgccggaattcc ggggaggcgg gggaagtgga ggaggaggat ccggaggagg aggaagcatg
ggggcaagag cctcc 75
<210> 9<210> 9
<211> 60<211> 60
<212> DNA<212> DNA
<213> 人造序列<213> Artificial Sequences
<400> 9<400> 9
ccggcgcgcc gtttaaacaa agctccgctc gagcggttat cacagcactc tggctttatg 60ccggcgcgcc gtttaaacaa agctccgctc gagcggttat cacagcactc tggctttatg 60
<210> 10<210> 10
<211> 9<211> 9
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 10<400> 10
Ala Met Gln Met Leu Lys Asp Thr IleAla Met Gln Met Leu Lys Asp Thr Ile
1 51 5
<210> 11<210> 11
<211> 20<211> 20
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 11<400> 11
Thr Ser Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr Lys Arg Trp IleThr Ser Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr Lys Arg Trp Ile
1 5 10 151 5 10 15
Ile Leu Gly LeuIle Leu Gly Leu
20 20
<210> 12<210> 12
<211> 135<211> 135
<212> PRT<212> PRT
<213> Human<213> Human
<400> 12<400> 12
Met Gly Ala Arg Ala Ser Val Leu Ser Gly Gly Lys Leu Asp Ala TrpMet Gly Ala Arg Ala Ser Val Leu Ser Gly Gly Lys Leu Asp Ala Trp
1 5 10 151 5 10 15
Glu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys Lys Tyr Arg Met LysGlu Lys Ile Arg Leu Arg Pro Gly Gly Lys Lys Lys Tyr Arg Met Lys
20 25 30 20 25 30
His Leu Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Leu Asn ProHis Leu Val Trp Ala Ser Arg Glu Leu Glu Arg Phe Ala Leu Asn Pro
35 40 45 35 40 45
Gly Leu Leu Glu Thr Ala Glu Gly Cys Gln Gln Gly Cys Gln Gln LeuGly Leu Leu Glu Thr Ala Glu Gly Cys Gln Gln Gly Cys Gln Gln Leu
50 55 60 50 55 60
Gln Ser Thr Leu Lys Thr Gly Ser Glu Glu Leu Lys Ser Leu Phe AsnGln Ser Thr Leu Lys Thr Gly Ser Glu Glu Leu Lys Ser Leu Phe Asn
65 70 75 8065 70 75 80
Thr Val Ala Thr Leu Trp Cys Val His Gln Arg Ile Asp Val Lys AspThr Val Ala Thr Leu Trp Cys Val His Gln Arg Ile Asp Val Lys Asp
85 90 95 85 90 95
Thr Lys Glu Ala Leu Asp Lys Ile Glu Glu Val Gln Asn Lys Ser GlnThr Lys Glu Ala Leu Asp Lys Ile Glu Glu Val Gln Asn Lys Ser Gln
100 105 110 100 105 110
Gln Lys Thr Gln Gln Ala Ala Ala Gly Thr Gly Ser Ser Ser Lys ValGln Lys Thr Gln Gln Ala Ala Ala Gly Thr Gly Ser Ser Ser Lys Val
115 120 125 115 120 125
Ser Gln Asn Tyr Pro Ile ValSer Gln Asn Tyr Pro Ile Val
130 135 130 135
<210> 13<210> 13
<211> 229<211> 229
<212> PRT<212> PRT
<213> human<213> human
<400> 13<400> 13
Gln Asn Ala Gln Gly Gln Met Val His Gln Pro Val Ser Pro Arg ThrGln Asn Ala Gln Gly Gln Met Val His Gln Pro Val Ser Pro Arg Thr
1 5 10 151 5 10 15
Leu Asn Ala Trp Val Lys Val Val Glu Glu Lys Gly Phe Asn Pro GluLeu Asn Ala Trp Val Lys Val Val Glu Glu Lys Gly Phe Asn Pro Glu
20 25 30 20 25 30
Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly Ala Thr Pro Gln AspVal Ile Pro Met Phe Ser Ala Leu Ser Glu Gly Ala Thr Pro Gln Asp
35 40 45 35 40 45
Leu Asn Met Met Leu Asn Ile Val Gly Gly His Gln Ala Ala Met GlnLeu Asn Met Met Leu Asn Ile Val Gly Gly His Gln Ala Ala Met Gln
50 55 60 50 55 60
Met Leu Lys Glu Thr Ile Asn Glu Glu Ala Ala Asp Trp Asp Arg ThrMet Leu Lys Glu Thr Ile Asn Glu Glu Ala Ala Asp Trp Asp Arg Thr
65 70 75 8065 70 75 80
Trp Asp Arg Thr Ala Gly Pro Ile Pro Pro Gly Gln Ile Arg Glu ProTrp Asp Arg Thr Ala Gly Pro Ile Pro Pro Gly Gln Ile Arg Glu Pro
85 90 95 85 90 95
Arg Gly Ser Asp Ile Ala Gly Thr Thr Ser Thr Leu Gln Glu Gln IleArg Gly Ser Asp Ile Ala Gly Thr Thr Ser Thr Leu Gln Glu Gln Ile
100 105 110 100 105 110
Ala Trp Met Thr Asn Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr LysAla Trp Met Thr Asn Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr Lys
115 120 125 115 120 125
Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val Arg Met Tyr Ser ProArg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val Arg Met Tyr Ser Pro
130 135 140 130 135 140
Pro Val Ser Ile Leu Asp Ile Arg Gln Gly Pro Lys Glu Pro Phe ArgPro Val Ser Ile Leu Asp Ile Arg Gln Gly Pro Lys Glu Pro Phe Arg
145 150 155 160145 150 155 160
Asp Tyr Val Asp Arg Phe Tyr Lys Thr Leu Arg Ala Glu Gln Ala ThrAsp Tyr Val Asp Arg Phe Tyr Lys Thr Leu Arg Ala Glu Gln Ala Thr
165 170 175 165 170 175
Gln Glu Val Lys Asn Trp Met Thr Glu Thr Leu Leu Val Gln Asn AlaGln Glu Val Lys Asn Trp Met Thr Glu Thr Leu Leu Val Gln Asn Ala
180 185 190 180 185 190
Asn Pro Asp Cys Lys Ser Ile Leu Lys Ala Leu Gly Thr Gly Ala ThrAsn Pro Asp Cys Lys Ser Ile Leu Lys Ala Leu Gly Thr Gly Ala Thr
195 200 205 195 200 205
Leu Glu Glu Met Met Thr Ala Cys Gln Gly Val Gly Gly Pro Ser HisLeu Glu Glu Met Met Thr Ala Cys Gln Gly Val Gly Gly Pro Ser His
210 215 220 210 215 220
Lys Ala Arg Val LeuLys Ala Arg Val Leu
225225
<210> 14<210> 14
<211> 16<211> 16
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 14<400> 14
Gly His Ala Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn GluGly His Ala Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu
1 5 10 151 5 10 15
<210> 15<210> 15
<211> 21<211> 21
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 15<400> 15
Thr Asn Asn Pro Pro Ile Pro Val Gly Glu Ile Tyr Lys Arg Trp IleThr Asn Asn Pro Pro Ile Pro Val Gly Glu Ile Tyr Lys Arg Trp Ile
1 5 10 151 5 10 15
Ile Leu Gly Leu AsnIle Leu Gly Leu Asn
20 20
<210> 16<210> 16
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 16<400> 16
Gly Gly His Gln Ala Ala Met Gln Met Leu Lys Asp Thr Ile AsnGly Gly His Gln Ala Ala Met Gln Met Leu Lys Asp Thr Ile Asn
1 5 10 151 5 10 15
<210> 17<210> 17
<211> 20<211> 20
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 17<400> 17
Thr Ser Asn Pro Pro Val Pro Val Gly Asp Ile Tyr Lys Arg Trp IleThr Ser Asn Pro Pro Val Pro Val Gly Asp Ile Tyr Lys Arg Trp Ile
1 5 10 151 5 10 15
Ile Leu Gly LeuIle Leu Gly Leu
20 20
<210> 18<210> 18
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 18<400> 18
Gly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn GluGly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu
1 5 10 151 5 10 15
<210> 19<210> 19
<211> 21<211> 21
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 19<400> 19
Thr Asn Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr Lys Arg Trp IleThr Asn Asn Pro Pro Ile Pro Val Gly Asp Ile Tyr Lys Arg Trp Ile
1 5 10 151 5 10 15
Ile Leu Gly Leu AsnIle Leu Gly Leu Asn
20 20
<210> 10<210> 10
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 10<400> 10
Pro Arg Thr Leu Asn Ala Trp Val Lys Val Val Glu Glu Lys GlyPro Arg Thr Leu Asn Ala Trp Val Lys Val Val Glu Glu Lys Gly
1 5 10 151 5 10 15
<210> 21<210> 21
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 21<400> 21
Glu Lys Gly Phe Asn Pro Glu Val Ile Pro Met Phe Ser Ala LeuGlu Lys Gly Phe Asn Pro Glu Val Ile Pro Met Phe Ser Ala Leu
1 5 10 151 5 10 15
<210> 22<210> 22
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 22<400> 22
Asn Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly AlaAsn Pro Glu Val Ile Pro Met Phe Ser Ala Leu Ser Glu Gly Ala
1 5 10 151 5 10 15
<210> 23<210> 23
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 23<400> 23
Gly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn GluGly His Gln Ala Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu
1 5 10 151 5 10 15
<210> 24<210> 24
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 24<400> 24
Ala Met Gln Met Leu Lys Glu Thr Ile Asn Glu Glu Ala Ala AspAla Met Gln Met Leu Lys Glu Thr Ile Asn Glu Glu Ala Ala Asp
1 5 10 151 5 10 15
<210> 25<210> 25
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 25<400> 25
Ile Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val ArgIle Tyr Lys Arg Trp Ile Ile Leu Gly Leu Asn Lys Ile Val Arg
1 5 10 151 5 10 15
<210> 26<210> 26
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 26<400> 26
Gly Leu Asn Lys Ile Val Arg Met Tyr Ser Pro Val Ser Ile LeuGly Leu Asn Lys Ile Val Arg Met Tyr Ser Pro Val Ser Ile Leu
1 5 10 151 5 10 15
<210> 27<210> 27
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 27<400> 27
Val Asp Arg Phe Tyr Lys Thr Leu Arg Ala Glu Gln Ala Thr GlnVal Asp Arg Phe Tyr Lys Thr Leu Arg Ala Glu Gln Ala Thr Gln
1 5 10 151 5 10 15
<210> 28<210> 28
<211> 15<211> 15
<212> PRT<212> PRT
<213> 人造序列<213> Artificial Sequences
<400> 28<400> 28
Tyr Lys Thr Leu Arg Ala Glu Gln Ala Thr Gln Glu Val Lys AsnTyr Lys Thr Leu Arg Ala Glu Gln Ala Thr Gln Glu Val Lys Asn
1 5 10 151 5 10 15
Claims (15)
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Citations (1)
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Non-Patent Citations (3)
| Title |
|---|
| Cloning vector pSLS94, complete sequence GenBank: KP659662.1;Sanber,K.S. et al.;《Genebank》;20150324;第1-4页 * |
| PD1-based DNA vaccine amplifies HIV-1 GAG-specific CD8+ T cells in mice;Jingying Zhou et al.;《The Journal of Clinical Investigation》;20130630;第123卷(第6期);第2629-2642页 * |
| Synthetic construct HIV-1 Clade B consensus gag protein gene, complete cds GenBank: AY531263.1;Garber,D. et al.;《GenBank》;20040217;第1页 * |
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