CN105087809A - Method and kit for rapidly detecting fetal cell VHL gene mutation in amniotic fluid - Google Patents
Method and kit for rapidly detecting fetal cell VHL gene mutation in amniotic fluid Download PDFInfo
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Abstract
本发明提供一种快速检测羊水中胎儿细胞VHL基因突变的方法及试剂盒,涉及基因检测领域。包括:先对羊水中提取的胎儿细胞DNA进行母体遗传物质污染与否的检测;若不存在母体遗传物质污染,则直接对胎儿细胞进行VHL基因突变检测;若存在母体遗传物质污染,则对胎儿细胞进行培养传代后再进行VHL基因突变检测;所述VHL基因突变检测包括:采用荧光原位杂交探针对胎儿细胞进行VHL基因大片段缺失的检测和采用VHL基因的三个外显子的扩增引物对胎儿DNA进行VHL基因点突变、小片段缺失或插入、剪切位点突变的检测。本发明可以准确高效的检测出羊水中胎儿细胞VHL基因是否发生突变,操作简单,成本低廉。The invention provides a method and kit for rapidly detecting VHL gene mutation of fetal cells in amniotic fluid, and relates to the field of gene detection. Including: First, detect whether the fetal cell DNA extracted from the amniotic fluid is contaminated by maternal genetic material; if there is no maternal genetic material contamination, then directly conduct VHL gene mutation detection on fetal cells; if there is maternal genetic material contamination, then test the fetus The VHL gene mutation detection is carried out after the cells are cultured and passaged; the VHL gene mutation detection includes: using fluorescence in situ hybridization probes to detect the large fragment deletion of the VHL gene on fetal cells and using the amplification of three exons of the VHL gene. Amplifiers are used to detect VHL gene point mutations, small fragment deletions or insertions, and splicing site mutations on fetal DNA. The invention can accurately and efficiently detect whether the VHL gene of fetal cells in the amniotic fluid is mutated, and the operation is simple and the cost is low.
Description
技术领域technical field
本发明涉及基因检测领域,尤其涉及羊水胎儿细胞VHL基因突变检测的方法和试剂盒。The invention relates to the field of gene detection, in particular to a method and a kit for detecting VHL gene mutation of amniotic fluid fetal cells.
背景技术Background technique
VHL基因(MIM编号608537)定位于3p25-26,全长10KD,包含三个外显子和两个内含子,可转录形成两种mRNA。包含三个外显子转录产物的mRNA翻译出p30(213个氨基酸)和p19(159个氨基酸)蛋白。p19是VHL基因第二转录起始位点(54号密码子)转录形成的异构体,与p30功能相似。The VHL gene (MIM No. 608537) is located at 3p25-26, with a full length of 10KD, including three exons and two introns, and can be transcribed to form two mRNAs. The mRNA containing three exon transcripts translates the p30 (213 amino acids) and p19 (159 amino acids) proteins. p19 is an isoform formed by the transcription of the second transcription initiation site (codon 54) of VHL gene, and has similar functions to p30.
VHL基因突变方式多样,包括点突变、大片段缺失、小片段缺失或插入、剪切位点突变等。目前检测VHL基因突变最常用的方法是PCR直接测序,准确率为38%~80%,这是由于PCR测序检测技术只能检测点突变、小片段缺失或插入、剪切位点突变,不能检测VHL基因大片段缺失,然而VHL大片段缺失的发生率为11%~40%。目前国内外用于VHL基因大片段缺失检测的方法包括印记杂交法SouthernBlot、多重连接探针扩增技术MLPA、逆转录法RT-PCR及通用引物荧光定量PCR法UPQFM-PCR等。SouthernBlot和MLPA具有检测方法操作繁琐,价格昂贵,不适于推广应用等缺陷,且上述VHL基因突变的检测样本多为外周血,目前还没有对羊水中胎儿细胞的VHL基因进行检测的方法,一方面由于提取羊水时,羊水中可能会受到母体遗传物的污染,影响检测结果;另一方面,目前的应用于外周血等检测样本的VHL基因检测方法,检测周期长,检测成本高,不利于VHL基因的快速准确的检测。There are various ways of VHL gene mutation, including point mutation, large fragment deletion, small fragment deletion or insertion, splicing site mutation and so on. At present, the most commonly used method for detecting VHL gene mutations is direct PCR sequencing, with an accuracy rate of 38% to 80%. VHL gene large fragment deletion, however, the incidence of VHL large fragment deletion is 11% to 40%. At present, the methods used to detect large fragment deletions of VHL gene at home and abroad include imprint hybridization method SouthernBlot, multiple ligation probe amplification technology MLPA, reverse transcription method RT-PCR and universal primer fluorescence quantitative PCR method UPQFM-PCR, etc. SouthernBlot and MLPA have the disadvantages of cumbersome detection methods, high price, and not suitable for popularization and application, and the above-mentioned VHL gene mutation detection samples are mostly peripheral blood. At present, there is no method for detecting the VHL gene of fetal cells in amniotic fluid. When the amniotic fluid is extracted, the amniotic fluid may be contaminated by maternal genetics, which will affect the test results; on the other hand, the current VHL gene detection method applied to peripheral blood and other samples has a long detection cycle and high detection cost, which is not conducive to VHL. Rapid and accurate detection of genes.
发明内容Contents of the invention
本发明的目的就是为了克服上述现有技术存在的问题,提供一种操作简单、检测快速、结果准确且成本低廉的胎儿细胞VHL基因突变检测方法和试剂盒。The purpose of the present invention is to overcome the above-mentioned problems in the prior art, and provide a fetal cell VHL gene mutation detection method and kit with simple operation, rapid detection, accurate results and low cost.
为实现本发明的目的,本发明一方面提供一种快速检测羊水中胎儿细胞VHL基因突变的方法,包括:To achieve the purpose of the present invention, the present invention provides a method for rapidly detecting VHL gene mutation of fetal cells in amniotic fluid on the one hand, comprising:
通过提取羊水中胎儿细胞的DNA,获得DNA溶液;DNA solution is obtained by extracting the DNA of fetal cells in amniotic fluid;
对所述的DNA溶液进行母体遗传物质污染的检测,判断DNA溶液中是否存在母体遗传物质污染;Carrying out the detection of maternal genetic material contamination to the DNA solution, and judging whether there is maternal genetic material contamination in the DNA solution;
若判断DNA溶液中不存在母体遗传物质污染,则直接对胎儿细胞进行VHL基因突变检测;If it is judged that there is no maternal genetic material contamination in the DNA solution, the fetal cells are directly tested for VHL gene mutations;
若判断DNA溶液中存在母体遗传物质污染,则对羊水中胎儿细胞进行培养传代后再进行VHL基因突变检测。If it is judged that there is maternal genetic material contamination in the DNA solution, the fetal cells in the amniotic fluid are cultured and passaged before the VHL gene mutation detection is performed.
其中,所述母体遗传物质污染检测包括:Wherein, said maternal genetic material contamination detection includes:
人工合成人类性别决定基因SRY和X染色体上的3个短串联重复序列DXS6797、DXS6807、AR的扩增引物对1-4;Artificially synthesized human sex-determining gene SRY and three short tandem repeat sequences DXS6797, DXS6807, and AR amplification primer pairs 1-4 on the X chromosome;
利用所述扩增引物对1-4和所述DNA溶液建立PCR扩增反应体系,进行PCR反应,得到PCR扩增产物;Using the amplification primer pairs 1-4 and the DNA solution to establish a PCR amplification reaction system, perform a PCR reaction, and obtain a PCR amplification product;
对所述PCR扩增产物中的SRY基因扩增产物进行1.5%琼脂糖凝胶电泳,对所述PCR扩增产物中的DXS6797、DXS6807和AR基因的扩增产物进行STR分析,根据所述SRY基因扩增产物的电泳结果和STR分析结果判断所述DNA溶液中是否存在母体遗传物质污染。Carry out 1.5% agarose gel electrophoresis to the SRY gene amplification product in the PCR amplification product, carry out STR analysis to the amplification product of DXS6797, DXS6807 and AR gene in the described PCR amplification product, according to the SRY The electrophoresis results and STR analysis results of the gene amplification products determine whether there is maternal genetic material contamination in the DNA solution.
其中,所述利用所述扩增引物对1-4和所述DNA溶液建立的PCR扩增反应体系是:总体积为25μl,包括12.5μl的PCRmix、20-80ng的DNA模板、0.5μl的扩增引物和余量的ddH2O;反应条件是:在95℃温度条件下预变性5min;95℃变性20s,SRY基因、DXS6797、DXS680755℃退火20s,AR58℃退火20s,72℃延伸20s,30个循环后72℃复性5min,4℃保存。Wherein, the PCR amplification reaction system established by using the amplification primer pairs 1-4 and the DNA solution is: a total volume of 25 μl, including 12.5 μl of PCRmix, 20-80ng of DNA template, 0.5 μl of amplification Add primers and the rest of ddH 2 O; the reaction conditions are: pre-denaturation at 95°C for 5 minutes; denaturation at 95°C for 20s, SRY gene, DXS6797, DXS680755°C annealing for 20s, AR58°C for 20s, extension at 72°C for 20s, 30°C After each cycle, renature at 72°C for 5 minutes and store at 4°C.
特别是,所述扩增引物对1-4如SEQIDNO.1-8所示,分别为:In particular, the amplification primer pair 1-4 is shown in SEQ ID NO.1-8, respectively:
扩增引物对1:SRY-F:5’-gagtgaagcgacccatgaac-3’Amplification primer pair 1: SRY-F: 5'-gagtgaagcgacccatgaac-3'
SRY-R:5’-tcttgagtgtgtggctttcg-3’SRY-R: 5'-tcttgagtgtgtggctttcg-3'
扩增引物对2:DXS6797-F:5’-ttccctctctccctctgtct-3’Amplification primer pair 2: DXS6797-F: 5'-ttccctctctccctctgtct-3'
DXS6797-R:5’-acacacacccaaaaccagat-3’DXS6797-R: 5'-acacacacccaaaaccagat-3'
扩增引物对3:DXS6807-F:5’-gagcaatgatctcatttgca-3’Amplification primer pair 3: DXS6807-F: 5'-gagcaatgatctcatttgca-3'
DXS6807-R:5’-aagtaaacatgtataggaaaaagct-3’DXS6807-R: 5'-aagtaaacatgtatagggaaaaagct-3'
扩增引物对4:AR-F:5’-tccagaatctgttccagagcgtgc-3’Amplification primer pair 4: AR-F: 5'-tccagaatctgttccagagcgtgc-3'
AR-R:5’-gctgtgaaggttgctgttctccat-3’AR-R: 5'-gctgtgaaggttgctgttctccat-3'
其中,所述扩增引物对2中DXS6797-F引物的5’端标记FAM荧光。Wherein, the 5' end of the DXS6797-F primer in the amplification primer pair 2 is labeled with FAM fluorescence.
其中,所述扩增引物对3中DXS6807-F引物的5’端标记FAM荧光。Wherein, the 5' end of the DXS6807-F primer in the amplification primer pair 3 is labeled with FAM fluorescence.
其中,所述扩增引物对4中AR-F引物的5’端标记FAM荧光。Wherein, the 5' end of the AR-F primer in the amplification primer pair 4 is labeled with FAM fluorescence.
其中,所述VHL基因突变检测包括:Wherein, the VHL gene mutation detection includes:
采用荧光原位杂交探针对所述羊水中胎儿细胞进行VHL基因大片段缺失的检测,获得所述胎儿细胞是否存在大片段缺失的检测结果。Using fluorescence in situ hybridization probes to detect the large fragment deletion of the VHL gene in the fetal cells in the amniotic fluid, and obtain a detection result of whether the fetal cells have a large fragment deletion.
特别是,所述荧光原位杂交探针上标有荧光信号,由具有SEQIDNO.15-20所示的碱基序列的探针引物对8-10进行PCR制备得到。In particular, the fluorescent in situ hybridization probe is marked with a fluorescent signal, and is prepared by performing PCR on the probe primer pair 8-10 having the base sequence shown in SEQ ID NO.15-20.
其中,所述探针引物对8-10如SEQIDNO.15-20所示的碱基序列,包括:Wherein, the probe primer pair 8-10 has the base sequence shown in SEQ ID NO.15-20, including:
探针引物85’-agtaacgagttggcctagcctcgProbe primer 85'-agtaacgagttggcctagcctcg
5’-gttcctccgggccggac5'-gttcctccgggccggac
探针引物95’-gtactgacgttttactttttaaaaagataaggProbe primer 95'-gtactgacgttttactttttaaaaagataagg
5’-catgctctacacattgttctcctgg5'-catgctctacacattgttctcctgg
探针引物105’-gcattgcacatcaacggatProbe primer 105'-gcattgcacatcaacggat
5’-cagtcttcccaaagcaggag5'-cagtcttcccaaagcaggag
其中,所述由具有SEQIDNO.15~20所示的碱基序列的探针引物进行PCR制备得到的杂交探针的大小为300-1000bp。Wherein, the size of the hybridization probe prepared by PCR with the probe primers having the base sequences shown in SEQ ID NO.15-20 is 300-1000bp.
进一步优选地,所述由具有SEQIDNO.15~20所示的碱基序列的探针引物进行PCR制备得到的杂交探针的大小为300-800bp。Further preferably, the size of the hybridization probe prepared by PCR with the probe primers having the base sequences shown in SEQ ID NO.15-20 is 300-800bp.
进一步优选地,所述由具有SEQIDNO.15~20所示的碱基序列的探针引物进行PCR制备得到的杂交探针的大小为300-500bp。Further preferably, the size of the hybridization probe prepared by PCR with the probe primers having the base sequences shown in SEQ ID NO. 15-20 is 300-500 bp.
其中,所述采用荧光原位杂交探针对所述胎儿细胞进行VHL基因大片段缺失的检测包括:Wherein, the detection of the large fragment deletion of VHL gene on the fetal cells by means of fluorescent in situ hybridization probes comprises:
利用已采集的羊水中胎儿细胞制备细胞涂片;Cell smears were prepared using the collected fetal cells in amniotic fluid;
将所述荧光原位杂交探针置于杂交液中与所述细胞发生杂交反应,获得杂交产物;placing the fluorescent in situ hybridization probe in a hybridization solution to undergo a hybridization reaction with the cells to obtain a hybridization product;
洗涤所述杂交产物,并进行细胞核染色,获得核染色后的细胞涂片;washing the hybridization product, and performing nuclear staining to obtain a cell smear after nuclear staining;
通过荧光显微镜观察所述核染色后的细胞涂片,判断待测样本的DNA是否发生了VHL基因大片段缺失。The cell smear after nuclear staining is observed by a fluorescence microscope to determine whether a large fragment of the VHL gene has been deleted in the DNA of the sample to be tested.
其中,所述利用已采集的羊水中胎儿细胞制备细胞涂片还包括:对采集得到的羊水中胎儿细胞进行培养传代。Wherein, the preparation of the cell smear by using the collected fetal cells in amniotic fluid further includes: culturing the collected fetal cells in amniotic fluid.
特别是,所述对羊水中的细胞进行培养传代是指在预先配制的胎儿细胞培养液中进行培养传代,其中培养温度为37℃,空气中CO2的体积百分比为5%。In particular, the culture and passage of the cells in the amniotic fluid refers to the culture and passage of the cells in the pre-prepared fetal cell culture medium, wherein the culture temperature is 37° C., and the volume percentage of CO 2 in the air is 5%.
特别是,所述胎儿细胞培养液由70-79%的hyclonedmem/f12培养基、20-28%胎牛血清FBS和1-2%的青霉素和链霉素双抗PS配制而成。In particular, the fetal cell culture medium is prepared from 70-79% hyclonedmem/f12 medium, 20-28% fetal bovine serum FBS and 1-2% penicillin and streptomycin double-antibody PS.
优选地,所述胎儿细胞培养液由74%的hyclonedmem/f12培养基、25%胎牛血清FBS、1%的青霉素和链霉素双抗PS配制而成。Preferably, the fetal cell culture medium is prepared by 74% hyclonedmem/f12 medium, 25% fetal bovine serum FBS, 1% penicillin and streptomycin double antibody PS.
其中,所述制备细胞涂片的步骤包括:通过离心获得待测样本中的细胞,经磷酸盐缓冲液离心和KCl低渗处理后,用固定液固定所述细胞的形态,制成细胞涂片;将所述细胞涂片进行老化处理,经胃蛋白酶消化处理后,进行酒精梯度脱水,得到细胞涂片。Wherein, the step of preparing the cell smear includes: obtaining the cells in the sample to be tested by centrifugation, after centrifugation with phosphate buffer solution and KCl hypotonic treatment, fixing the morphology of the cells with a fixative to make a cell smear ; aging the cell smear, digesting it with pepsin, and dehydrating it with alcohol gradient to obtain the cell smear.
其中,所述固定液是由体积比为3:1的甲醇和冰醋酸配制而成。Wherein, the fixative is prepared from methanol and glacial acetic acid with a volume ratio of 3:1.
其中,所述杂交液是是由体积比为5:1:1:3的甲酰胺、20xSSC、硫酸葡聚糖和水配制而成。Wherein, the hybridization solution is prepared from formamide, 20xSSC, dextran sulfate and water in a volume ratio of 5:1:1:3.
其中,所述老化处理是将所述细胞涂片在56℃条件下在烤片机上处理20min。Wherein, the aging treatment is to process the cell smear on a toaster at 56° C. for 20 minutes.
其中,所述老化处理还可以是在15-30℃的室温条件下过夜放置12-16h。Wherein, the aging treatment may also be placed overnight at a room temperature of 15-30° C. for 12-16 hours.
特别是,所述采用荧光原位杂交探针对所述胎儿细胞进行VHL基因大片段缺失的检测还包括:荧光原位杂交探针的制备。In particular, the detection of the deletion of large fragments of the VHL gene on the fetal cells by using the fluorescent in situ hybridization probe also includes: the preparation of the fluorescent in situ hybridization probe.
其中,所述荧光原位杂交探针的制备包括:在人类基因组中筛选用作FISH探针的VHL基因序列,通过克隆引物对11-13获得目的基因片段;将得到的基因片段连接到质粒中,获得含有目的基因片段的质粒;将所述质粒在大肠杆菌中进行扩增,提取质粒后,得到质粒溶液;利用探针引物对8-10、荧光原料和所述质粒溶液制备具有荧光染料标记的荧光原位杂交探针。Wherein, the preparation of the fluorescent in situ hybridization probe includes: screening the VHL gene sequence used as a FISH probe in the human genome, obtaining the target gene fragment by cloning primer pairs 11-13; connecting the obtained gene fragment into a plasmid , obtain a plasmid containing the target gene fragment; amplify the plasmid in Escherichia coli, extract the plasmid, and obtain a plasmid solution; use probe primer pairs 8-10, fluorescent raw materials and the plasmid solution to prepare fluorescent dye-labeled fluorescent in situ hybridization probes.
其中,所述克隆引物对11-13如SEQIDNO.21-26所示的碱基序列,包括:Wherein, the cloning primer pair 11-13 has the base sequence shown in SEQ ID NO.21-26, including:
克隆引物对11F:5’-aaccttagaggggcgaaaaaCloning primer pair 11F: 5'-aaccttagaggggcgaaaaa
R:5’-gcttcagaccgtgctatcgtR: 5'-gcttcagaccgtgctatcgt
克隆引物对12F:5’-aacctttgcttgtcccgataCloning primer pair 12F: 5'-aacctttgcttgtcccgata
R:5’-ttatcagagtgggtggcacaR: 5'-ttatcagagtgggtggcaca
克隆引物对13F:5’-gcaaagcctcttgttcgttcCloning primer pair 13F: 5'-gcaaagcctcttgttcgttc
R:5’-cagtcttcccaaagcaggag。R: 5'-cagtcttcccaaagcaggag.
其中,所述通过克隆引物对11-13获得目的基因片段的反应体系是Wherein, the reaction system for obtaining the target gene fragment by cloning primer pairs 11-13 is
反应物体积reactant volume
PCRmix25μlPCR mix25μl
DNA模板100ngDNA template 100ng
引物2μlPrimer 2μl
ddH2O余量ddH 2 O balance
总体积50μl。Total volume 50 μl.
其中,所述通过克隆引物对11-13获得目的基因片段反应条件是:94℃预变性10min,94℃变性30s,58℃退火30s,72℃延伸60s,30个循环,72℃复性7min,4℃保存。Wherein, the reaction conditions for obtaining the target gene fragment by cloning primer pairs 11-13 are: pre-denaturation at 94°C for 10 minutes, denaturation at 94°C for 30 seconds, annealing at 58°C for 30 seconds, extension at 72°C for 60 seconds, 30 cycles, renaturation at 72°C for 7 minutes, Store at 4°C.
其中,所述将得到的基因片段连接到质粒中的反应体系是:T-vector0.7μl,PCR产物5μl,T4连接酶1μl,T4Bμffer1μl,ddH2O余量,总体积10μl。Wherein, the reaction system for ligating the obtained gene fragment into the plasmid is: T-vector 0.7 μl, PCR product 5 μl, T4 ligase 1 μl, T4B μffer 1 μl, ddH 2 O balance, the total volume is 10 μl.
其中,所述将得到的基因片段连接到质粒中的反应条件是:在室温条件下反应2h。Wherein, the reaction condition for linking the obtained gene fragment into the plasmid is: react at room temperature for 2 hours.
其中,所述利用探针引物、荧光原料和所述质粒溶液制备具有荧光染料标记的荧光原位杂交探针的反应体系为:Wherein, the reaction system for preparing fluorescent in situ hybridization probes labeled with fluorescent dyes using probe primers, fluorescent raw materials and the plasmid solution is:
其中,所述利用探针引物、荧光原料和所述质粒溶液制备具有荧光染料标记的荧光原位杂交探针的反应条件为:94℃预变性2min,94℃变性30s,58℃退火30s,72℃延伸45s,30个循环,72℃复性10min,4℃保存。得到荧光原位杂交探针。Wherein, the reaction conditions for preparing fluorescent in situ hybridization probes labeled with fluorescent dyes using probe primers, fluorescent raw materials and the plasmid solution are: pre-denaturation at 94°C for 2 minutes, denaturation at 94°C for 30s, annealing at 58°C for 30s, and 72°C. Extend at ℃ for 45s, 30 cycles, anneal at 72℃ for 10min, and store at 4℃. Fluorescence in situ hybridization probes were obtained.
其中,所述荧光原位杂交探针的浓度是约8-20ng/μl。Wherein, the concentration of the fluorescent in situ hybridization probe is about 8-20 ng/μl.
优选的,所述荧光原位杂交探针的浓度是约10-15ng/μl。Preferably, the concentration of the fluorescent in situ hybridization probe is about 10-15 ng/μl.
其中,所述杂交反应的共变性温度是70-80℃,共变性反应时间是5-10min。Wherein, the co-denaturation temperature of the hybridization reaction is 70-80° C., and the co-denaturation reaction time is 5-10 min.
优选地,所述杂交反应的共变性温度是73-76℃,共变性反应时间是7-8min。Preferably, the co-denaturation temperature of the hybridization reaction is 73-76° C., and the co-denaturation reaction time is 7-8 minutes.
其中,所述杂交反应的杂交温度是40-46℃,杂交时间是14-18h。Wherein, the hybridization temperature of the hybridization reaction is 40-46°C, and the hybridization time is 14-18h.
优选地,所述杂交反应的杂交温度是42-44℃,杂交时间是16h。Preferably, the hybridization temperature of the hybridization reaction is 42-44° C., and the hybridization time is 16 hours.
其中,所述VHL基因突变检测还包括:Wherein, the VHL gene mutation detection also includes:
采用VHL基因的三个外显子VHL-1、VHL-2和VHL-3的扩增引物对5-7对所述DNA溶液进行VHL基因点突变、小片段缺失或插入、剪切位点突变的检测,获得所述DNA溶液中是否存在点突变、小片段缺失或插入、剪切位点突变的检测结果。Use amplification primer pairs 5-7 of the three exons VHL-1, VHL-2 and VHL-3 of the VHL gene to perform VHL gene point mutations, small fragment deletions or insertions, and cut site mutations on the DNA solution detection, to obtain the detection results of point mutations, small fragment deletions or insertions, and cut site mutations in the DNA solution.
其中,所述VHL基因的三个外显子VHL-1、VHL-2和VHL-3的扩增引物对5-7如SEQIDNO.9-14所示,分别为:Wherein, the amplification primer pairs 5-7 of the three exons VHL-1, VHL-2 and VHL-3 of the VHL gene are shown in SEQ ID NO.9-14, respectively:
扩增引物对5:VHL-1F5’-ggtggtctggatcgcgga-3’Amplification primer pair 5: VHL-1F5'-ggtggtctggatcgcgga-3'
VHL-1R5’-ggcttcagaccgtgctatcg-3’VHL-1R5'-ggcttcagaccgtgctatcg-3'
扩增引物对6:VHL-2F5’-gtggctctttaacaacctttgc-3’Amplification primer pair 6: VHL-2F5'-gtggctctttaacaacctttgc-3'
VHL-2R5’-cctgtacttaccacaacaaccttatc-3’VHL-2R5'-cctgtacttaccacaacaaccttatc-3'
扩增引物对7:VHL-3F5’-gcaaagcctcttgttcgttc-3’Amplification primer pair 7: VHL-3F5'-gcaaagcctcttgttcgttc-3'
VHL-3R5’-caaaaatgccaccaccttct-3’。VHL-3R5'-caaaaatgccaccaccttct-3'.
尤其是,所述采用VHL基因的三个外显子VHL-1、VHL-2和VHL-3的扩增引物对所述DNA溶液进行VHL基因点突变、小片段缺失或插入、剪切位点突变的检测包括以下步骤:In particular, the use of amplification primers of the three exons VHL-1, VHL-2 and VHL-3 of the VHL gene is used to carry out VHL gene point mutation, small fragment deletion or insertion, and cut site Detection of mutations involves the following steps:
人工合成VHL基因的三个外显子VHL-1、VHL-2和VHL-3的扩增引物对5-7;Amplification primer pairs 5-7 of the three exons VHL-1, VHL-2 and VHL-3 of the artificially synthesized VHL gene;
利用所述扩增引物对5-7和所述DNA溶液建立PCR扩增反应体系,进行PCR反应获得PCR产物;Using the amplification primer pairs 5-7 and the DNA solution to establish a PCR amplification reaction system, perform a PCR reaction to obtain a PCR product;
将得到的PCR产物进行纯化处理和测序分析,判断所述DNA是否发生了VHL基因点突变、小片段缺失或插入和剪切位点突变。The obtained PCR product is subjected to purification treatment and sequencing analysis to determine whether the DNA has a VHL gene point mutation, a small fragment deletion or an insertion and splicing site mutation.
其中,所述利用所述引物对5-7和所述DNA溶液建立的PCR扩增反应体系是:总体积为25μl,包括12.5μl的PCRmix、100ng的DNA模板、1μl的引物和余量的ddH2O;反应条件是:94℃10min预变性;94℃变性30s,58℃退火30s,72℃延伸30s,30个循环;72℃复性5min;4℃保存,获得PCR产物。Wherein, the PCR amplification reaction system established by using the primer pair 5-7 and the DNA solution is: a total volume of 25 μl, including 12.5 μl of PCRmix, 100 ng of DNA template, 1 μl of primers and the remainder of ddH 2 O; the reaction conditions are: pre-denaturation at 94°C for 10 min; denaturation at 94°C for 30 s, annealing at 58°C for 30 s, extension at 72°C for 30 s, 30 cycles; renaturation at 72°C for 5 min; storage at 4°C to obtain PCR products.
为实现本发明的目的,本发明另一方面提供一种用于检测VHL基因突变的试剂盒,包括:For realizing the purpose of the present invention, the present invention provides a kind of test kit for detecting VHL gene mutation on the other hand, comprising:
用于提取羊水中细胞DNA的试剂;Reagents for extracting cell DNA from amniotic fluid;
包含如SEQIDNO.1-8所示的性别决定基因和X染色体短串联重复序列的扩增引物,用于检测所述羊水细胞DNA是否存在母体遗传物质污染的试剂;An amplification primer comprising a sex-determining gene and an X chromosome short tandem repeat sequence as shown in SEQ ID NO.1-8, a reagent for detecting whether there is maternal genetic material contamination in the amniocyte DNA;
包含如SEQIDNO.9-14所示的扩增引物,用于进行VHL基因点突变、小片段缺失或插入、剪切位点突变的检测以获得胎儿细胞是否存在VHL基因点突变、小片段缺失或插入、剪切位点突变的检测结果的试剂;Contains amplification primers as shown in SEQ ID NO.9-14, for the detection of VHL gene point mutations, small fragment deletions or insertions, and splicing site mutations to obtain whether fetal cells have VHL gene point mutations, small fragment deletions or Reagents for the detection of insertion and cleavage site mutations;
包含如SEQIDNO.15-20所示的杂交探针的扩增引物通过PCR反应制备得到标有荧光信号的杂交探针,还包含其他用于进行VHL基因大片段缺失的检测以获得胎儿细胞是否存在VHL基因大片段缺失的检测结果的试剂;以及,The amplification primer comprising the hybridization probe shown in SEQ ID NO.15-20 is prepared by PCR reaction to obtain the hybridization probe marked with fluorescent signal, and also includes other detections for large fragment deletion of VHL gene to obtain whether fetal cells exist Reagents for the detection of large deletions in the VHL gene; and,
用于对所述羊水中的胎儿细胞进行培养传代的试剂。Reagents for culturing the fetal cells in the amniotic fluid.
其中,所述提取羊水中细胞DNA的试剂可以从市售得到,还可以通过配制得到的其他任意可以从羊水细胞中提取DNA的试剂,根据本发明的一个实施例,本发明所使用的试剂购自Promega公司的A1120基因组DNA提取试剂盒。Wherein, the reagents for extracting cell DNA in amniotic fluid can be obtained commercially, and any other reagents that can extract DNA from amniotic fluid cells can also be prepared. According to an embodiment of the present invention, the reagents used in the present invention can be purchased from A1120 Genomic DNA Extraction Kit from Promega Company.
其中,所述用于检测所述羊水细胞是否存在母体遗传物质的试剂包括:用于进行PCR扩增反应的PCRmix和扩增引物。Wherein, the reagents for detecting whether there is maternal genetic material in the amniocytes include: PCRmix and amplification primers for PCR amplification reaction.
其中,所述引物是如SEQNO.1-8所示的用于扩增人类性别决定基因SRY的扩增引物对1和用于扩增X染色体上的3个短串联重复序列DXS6797、DXS6807、AR的扩增引物对2-4:Wherein, the primers are amplification primer pair 1 for amplifying the human sex-determining gene SRY as shown in SEQNO.1-8 and for amplifying three short tandem repeat sequences DXS6797, DXS6807, AR on the X chromosome Amplification primer pairs 2-4:
扩增引物对1:SRY-F:5’-gagtgaagcgacccatgaac-3’Amplification primer pair 1: SRY-F: 5'-gagtgaagcgacccatgaac-3'
SRY-R:5’-tcttgagtgtgtggctttcg-3’SRY-R: 5'-tcttgagtgtgtggctttcg-3'
扩增引物对2:DXS6797-F:5’-ttccctctctccctctgtct-3’Amplification primer pair 2: DXS6797-F: 5'-ttccctctctccctctgtct-3'
DXS6797-R:5’-acacacacccaaaaccagat-3’DXS6797-R: 5'-acacacacccaaaaccagat-3'
扩增引物对3:DXS6807-F:5’-gagcaatgatctcatttgca-3’Amplification primer pair 3: DXS6807-F: 5'-gagcaatgatctcatttgca-3'
DXS6807-R:5’-aagtaaacatgtataggaaaaagct-3’DXS6807-R: 5'-aagtaaacatgtataggaaaaagct-3'
扩增引物对4:AR-F:5’-tccagaatctgttccagagcgtgc-3’Amplification primer pair 4: AR-F: 5'-tccagaatctgttccagagcgtgc-3'
AR-R:5’-gctgtgaaggttgctgttctccat-3’AR-R: 5'-gctgtgaaggttgctgttctccat-3'
其中,所述扩增引物对2中DXS6797-F引物的5’端标记FAM荧光。Wherein, the 5' end of the DXS6797-F primer in the amplification primer pair 2 is labeled with FAM fluorescence.
其中,所述扩增引物对3中DXS6807-F引物的5’端标记FAM荧光。Wherein, the 5' end of the DXS6807-F primer in the amplification primer pair 3 is labeled with FAM fluorescence.
其中,所述扩增引物对4中AR-F引物的5’端标记FAM荧光。Wherein, the 5' end of the AR-F primer in the amplification primer pair 4 is labeled with FAM fluorescence.
其中,所述用于进行VHL基因点突变、小片段缺失或插入、剪切位点突变检测的试剂包括:用于进行PCR扩增反应的PCRmix和扩增引物。Wherein, the reagents for detecting VHL gene point mutations, small fragment deletions or insertions, and splicing site mutations include: PCRmix and amplification primers for performing PCR amplification reactions.
其中,所述引物是包括如SEQNO.9-14所示的用于扩增VHL基因的三个外显子的扩增引物5-7:Wherein, the primers include amplification primers 5-7 for amplifying three exons of the VHL gene as shown in SEQNO.9-14:
扩增引物对5:VHL-1F5’-ggtggtctggatcgcgga-3’Amplification primer pair 5: VHL-1F5'-ggtggtctggatcgcgga-3'
VHL-1R5’-ggcttcagaccgtgctatcg-3’VHL-1R5'-ggcttcagaccgtgctatcg-3'
扩增引物对6:VHL-2F5’-gtggctctttaacaacctttgc-3’Amplification primer pair 6: VHL-2F5'-gtggctctttaacaacctttgc-3'
VHL-2R5’-cctgtacttaccacaacaaccttatc-3’VHL-2R5'-cctgtacttaccacaacaaccttatc-3'
扩增引物对7:VHL-3F5’-gcaaagcctcttgttcgttc-3’Amplification primer pair 7: VHL-3F5'-gcaaagcctcttgttcgttc-3'
VHL-3R5’-caaaaatgccaccaccttct-3’。VHL-3R5'-caaaaatgccaccaccttct-3'.
其中,所述用于进行VHL基因大片段缺失的检测的试剂包括:包括所述由SEQIDNO.15-20所示的碱基序列的探针引物对8-10进行PCR制备得到的标有荧光信号的杂交探针,还包括:用于将待测样本制备成细胞涂片的试剂I;用于使所述荧光原位杂交探针与所述细胞发生杂交反应,获得杂交产物的试剂II;用于洗涤所述杂交产物,将上述杂交产物进行细胞核染色,获得核染色的细胞涂片的试剂III。Wherein, the reagents for detecting the deletion of large fragments of the VHL gene include: the probe primer pairs 8-10 comprising the base sequence shown in SEQ ID NO.15-20 are prepared by PCR and labeled with fluorescent signals The hybridization probe also includes: reagent I for preparing the sample to be tested into a cell smear; reagent II for hybridizing the fluorescent in situ hybridization probe with the cell to obtain a hybridization product; After the hybridization product is washed, the above hybridization product is subjected to nuclear staining to obtain reagent III of a nuclear stained cell smear.
其中,所述探针引物对8-10为:Wherein, the probe primer pair 8-10 is:
探针引物85’-agtaacgagttggcctagcctcgProbe primer 85'-agtaacgagttggcctagcctcg
5’-cgtcttcttcagggccgtactc5'-cgtcttcttcagggccgtactc
探针引物95’-gtactgacgttttactttttaaaaagataaggProbe primer 95'-gtactgacgttttactttttaaaaagataagg
5’-catgctctacacattgttctcctgg5'-catgctctacacattgttctcctgg
探针引物105’-gcattgcacatcaacggatProbe primer 105'-gcattgcacatcaacggat
5’-cagtcttcccaaagcaggag5'-cagtcttcccaaagcaggag
其中,所述将待测样本制备细胞涂片的试剂I包括:由体积比为3:1的甲醇和冰醋酸配制而成的固定液;Wherein, the reagent I for preparing a cell smear from the sample to be tested includes: a fixative prepared from methanol and glacial acetic acid at a volume ratio of 3:1;
其中,所述用于使所述荧光原位杂交探针与所述细胞发生杂交反应,获得杂交产物的试剂II包括:由体积比为5:1:1:3的甲酰胺、20×SSC、硫酸葡聚糖和水配制而成的杂交液。Wherein, the reagent II for hybridizing the fluorescent in situ hybridization probe with the cells to obtain the hybridization product comprises: formamide, 20×SSC, Hybridization solution prepared from dextran sulfate and water.
其中,所述用于洗涤所述杂交产物,将杂交产物进行细胞核染色,获得核染色的细胞涂片的试剂III包括:洗涤杂交产物的0.4×SSC溶液制备的0.3%的NP40、2×SSC溶液制备的0.1%的NP40、70%的酒精溶液及对细胞核染色的DAPI。Wherein, the reagent III for washing the hybridization product, performing nuclear staining on the hybridization product, and obtaining a nuclear-stained cell smear includes: 0.3% NP40 prepared by washing the hybridization product in 0.4×SSC solution, 2×SSC solution Prepared 0.1% NP40, 70% ethanol solution and DAPI for nuclei staining.
其中,所述用于对所述羊水中的胎儿细胞进行培养传代的试剂包括:70-79%的hyclonedmem/f12培养基、20-28%胎牛血清FBS和1-2%的青霉素和链霉素双抗PS。Wherein, the reagents for culturing the fetal cells in the amniotic fluid include: 70-79% hyclonedmem/f12 medium, 20-28% fetal bovine serum FBS and 1-2% penicillin and streptomycin Antibodies against PS.
优选的,所述用于对所述羊水中的胎儿细胞进行培养传代的试剂包括:74%的hyclonedmem/f12培养基、25%胎牛血清FBS和1%的青霉素和链霉素双抗PSPreferably, the reagents used to culture and passage the fetal cells in the amniotic fluid include: 74% hyclonedmem/f12 medium, 25% fetal bovine serum FBS and 1% penicillin and streptomycin double antibody PS
本发明的有益效果体现在以下方面:The beneficial effects of the present invention are reflected in the following aspects:
1、本发明提供的检测方法可以快速准确的判断从羊水中提取的胎儿细胞DNA中是否存在母体遗传物质污染,从而保证胎儿VHL基因突变检测结果的准确性。1. The detection method provided by the present invention can quickly and accurately judge whether there is maternal genetic material contamination in fetal cell DNA extracted from amniotic fluid, thereby ensuring the accuracy of fetal VHL gene mutation detection results.
2、本发明提供的检测方法可以在短时间内检测出胎儿VHL基因是否存在点突变、小片段缺失或插入、大片段缺失及剪切位点突变等突变,检测周期短,可降低时间成本,最快一周内就可以出结果。2. The detection method provided by the present invention can detect whether there are mutations such as point mutations, small fragment deletions or insertions, large fragment deletions, and splicing site mutations in the fetal VHL gene in a short period of time. The detection cycle is short, and the time cost can be reduced. Results can be available within a week at the earliest.
3、本发明提供的检测方法操作便捷,检测结果准确可靠,检测效率高,检测成本低,实用性强。3. The detection method provided by the present invention is easy to operate, accurate and reliable in detection results, high in detection efficiency, low in detection cost and strong in practicability.
4、本发明提供的试剂盒可以达到上述检测目的,试剂盒成本低廉、检测结果准确可靠。4. The kit provided by the present invention can achieve the above-mentioned detection purpose, the kit is low in cost, and the detection result is accurate and reliable.
附图说明Description of drawings
图1是本发明的性别决定基因SRY的PCR扩增产物的琼脂糖凝胶电泳图,其中,第一泳道为DNAMarker,大小为100-700,泳道2、3、4分别为胎儿、父亲和母亲SRY的PCR产物电泳图;Fig. 1 is the agarose gel electrophoresis figure of the PCR amplification product of sex-determining gene SRY of the present invention, wherein, the first swimming lane is DNAMarker, and size is 100-700, and swimming lanes 2, 3, 4 are fetus, father and mother respectively SRY PCR product electrophoresis;
图2是本发明的STR分析结果图,其中,图A为DXS6797的峰图,图B是DXS6807的峰图,图C是AR的峰图,图中从上至下分别为母亲、父亲和胎儿的峰图;Figure 2 is a diagram of the STR analysis results of the present invention, wherein Figure A is the peak diagram of DXS6797, Figure B is the peak diagram of DXS6807, and Figure C is the peak diagram of AR, and the diagrams are respectively mother, father and fetus from top to bottom Peak diagram;
图3是本发明的羊水中胎儿细胞的VHL基因测序结果图;Fig. 3 is the result figure of the VHL gene sequencing of fetal cells in amniotic fluid of the present invention;
图4是本发明的羊水中胎儿细胞的荧光杂交信号图,图中的白点是荧光亮点;Fig. 4 is a fluorescent hybridization signal diagram of fetal cells in amniotic fluid of the present invention, and the white dots in the figure are fluorescent bright spots;
图5是本发明的阳性对照样本的荧光杂交信号图,图中的白点是荧光亮点;Fig. 5 is the fluorescence hybridization signal diagram of the positive control sample of the present invention, and the white dot in the figure is the fluorescent bright spot;
图6是本发明的阴性对照样本的荧光杂交信号图,图中的白点是荧光亮点。Fig. 6 is a fluorescent hybridization signal graph of the negative control sample of the present invention, and the white dots in the graph are fluorescent bright spots.
具体实施方式Detailed ways
下面结合具体实施例来进一步描述本发明,本发明的优点和特点将会随着描述而更为清楚。但这些实施例仅是范例性的,并不对本发明的范围构成任何限制。本领域技术人员应该理解的是,在不偏离本发明的精神和范围下可以对本发明技术方案的细节和形式进行修改或替换,但这些修改和替换均落入本发明的保护范围内。The present invention will be further described below in conjunction with specific embodiments, and the advantages and characteristics of the present invention will become clearer along with the description. However, these embodiments are only exemplary and do not constitute any limitation to the scope of the present invention. Those skilled in the art should understand that the details and forms of the technical solutions of the present invention can be modified or replaced without departing from the spirit and scope of the present invention, but these modifications and replacements all fall within the protection scope of the present invention.
需要说明的是,在进行本实施例之前,需先对胎儿母亲和父亲的外周血进行VHL基因突变的检测,其检测方法可以通过PCR测序检测技术检测点突变、小片段缺失或插入、剪切位点突变,也可以通过SouthernBlot、MLPA、RT-PCR及UPQFM-PCR进行VHL基因大片段缺失的检测,其检测方法不受限制,根据本发明的实施例,本发明方法提供的对胎儿母亲和父亲的外周血进行VHL基因突变的检测与胎儿的检测方法相同。It should be noted that, before carrying out this embodiment, the peripheral blood of the fetal mother and father must be detected for VHL gene mutations. The detection method can detect point mutations, small fragment deletions or insertions, and splicing by PCR sequencing detection technology. Site mutations can also be detected by SouthernBlot, MLPA, RT-PCR and UPQFM-PCR for the large fragment deletion of VHL gene, and its detection method is not limited. The father's peripheral blood was tested for VHL gene mutation in the same way as the fetus.
需要说明的是,本申请中提到的DNA的提取,包括胎儿DNA、胎儿母亲外周血DNA和胎儿父亲外周血DNA以及正常人外周血DNA的提取,可以通过任意一个途径实现,根据本发明的一个实施例,本发明进行的DNA的提取都是采用Promega公司的A1120基因组DNA提取试剂盒进行提取,提取方法根据说明书的步骤进行。It should be noted that the extraction of DNA mentioned in this application, including the extraction of fetal DNA, fetal mother's peripheral blood DNA, fetal father's peripheral blood DNA and normal human peripheral blood DNA, can be achieved by any method. In one embodiment, the extraction of DNA in the present invention is carried out by using the A1120 Genomic DNA Extraction Kit of Promega Company, and the extraction method is carried out according to the steps in the instructions.
实施例1胎儿细胞DNA中是否存在母体遗传物质污染的检测Example 1 Detection of maternal genetic material contamination in fetal cell DNA
1、样本的采集1. Collection of samples
用穿刺设备抽取妊娠14~22周的孕妇的羊水,获得羊水胎儿细胞。The amniotic fluid of pregnant women at 14 to 22 weeks of pregnancy is extracted with a puncture device to obtain amniotic fluid fetal cells.
需要说明的是,本发明提供的检测方法同样适用于使用穿刺设备抽取妊娠为11~14周的孕妇的绒毛样本。It should be noted that the detection method provided by the present invention is also applicable to using a puncture device to extract villi samples of pregnant women whose pregnancy is 11-14 weeks.
需要说明的是,本申请使用的穿刺设备通过市售得到,没有特别的限定,可以是任意一种可以实现羊水穿刺的穿刺设备。It should be noted that the puncture device used in this application is commercially available, and is not particularly limited, and may be any puncture device that can realize amniocentesis.
2、母体遗传物质污染的检测2. Detection of maternal genetic material contamination
2.1、引物的设计和合成2.1. Design and synthesis of primers
根据人类性别决定基因SRY、X染色体上的3个短串联重复序列DXS6797、DXS6807、AR的碱基序列,设计并合成SRY基因、DXS6797、DXS6807、AR序列的PCR扩增引物对:According to the base sequences of the human sex-determining gene SRY and the three short tandem repeat sequences DXS6797, DXS6807, and AR on the X chromosome, a primer pair for PCR amplification of the SRY gene, DXS6797, DXS6807, and AR sequences was designed and synthesized:
扩增引物对1:SRY-F:5’-gagtgaagcgacccatgaac-3’Amplification primer pair 1: SRY-F: 5'-gagtgaagcgacccatgaac-3'
SRY-R:5’-tcttgagtgtgtggctttcg-3’SRY-R: 5'-tcttgagtgtgtggctttcg-3'
扩增引物对2:DXS6797-F:5’-ttccctctctccctctgtct-3’Amplification primer pair 2: DXS6797-F: 5'-ttccctctctccctctgtct-3'
DXS6797-R:5’-acacacacccaaaaccagat-3’DXS6797-R: 5'-acacacacccaaaaccagat-3'
扩增引物对3:DXS6807-F:5’-gagcaatgatctcatttgca-3’Amplification primer pair 3: DXS6807-F: 5'-gagcaatgatctcatttgca-3'
DXS6807-R:5’-aagtaaacatgtataggaaaaagct-3’DXS6807-R: 5'-aagtaaacatgtatagggaaaaagct-3'
扩增引物对4:AR-F:5’-tccagaatctgttccagagcgtgc-3’Amplification primer pair 4: AR-F: 5'-tccagaatctgttccagagcgtgc-3'
AR-R:5’-gctgtgaaggttgctgttctccat-3’AR-R: 5'-gctgtgaaggttgctgttctccat-3'
其中,扩增引物DXS6797-F、DXS6807-F、AR-F的5’端标记FAM荧光。Among them, the 5' ends of the amplification primers DXS6797-F, DXS6807-F, and AR-F were labeled with FAM fluorescence.
2.2、扩增SRY基因及DXS6797、DXS6807、AR基因2.2. Amplify SRY gene and DXS6797, DXS6807, AR gene
提取羊水胎儿细胞的DNA、胎儿母亲外周血DNA和胎儿父亲外周血DNA,并以提取的羊水胎儿DNA和父母的DNA为模板分别建立总体积为25μl的PCR扩增反应体系:12.5μl的PCRmix溶液(所述PCRmix溶液选用天根生化科技有限公司生产的2xTaqPCRMasterMixKT201-02)、70ngDNA(其中,所述DNA的用量还可以是40-70ng范围内的任意用量,还可以是20-80ng范围内的任意用量,都可以实现本发明的目的),上述引物对各0.5μl、引物浓度是10pmol/μl,余量ddH2O。上述反应的反应条件是:在95℃温度条件下预变性5min;95℃变性20s,SRY基因、DXS6797、DXS680755℃退火20s,AR58℃退火20s,72℃延伸20s,30个循环后72℃复性5min;4℃保存,得到SRY、DXS6797、DXS6807、AR基因的扩增产物。Extract the DNA of the amniotic fluid fetal cells, the peripheral blood DNA of the fetal mother and the peripheral blood DNA of the fetal father, and use the extracted amniotic fluid fetal DNA and parental DNA as templates to establish a PCR amplification reaction system with a total volume of 25 μl: 12.5 μl of PCRmix solution (the PCRmix solution selects 2xTaqPCCRMasterMixKT201-02 produced by Tiangen Biochemical Technology Co., Ltd.), 70ngDNA (wherein, the amount of the DNA can also be any amount within the 40-70ng range, or any amount within the 20-80ng range. The amount used can achieve the purpose of the present invention), each of the above primer pairs is 0.5 μl, the primer concentration is 10 pmol/μl, and the balance is ddH 2 O. The reaction conditions of the above reaction are: pre-denaturation at 95°C for 5min; denaturation at 95°C for 20s, SRY gene, DXS6797, DXS680755°C annealing for 20s, AR58°C for 20s, extension at 72°C for 20s, and renaturation at 72°C after 30 cycles. 5min; store at 4°C to obtain amplification products of SRY, DXS6797, DXS6807, and AR genes.
2.3、分析判断基因扩增产物2.3. Analysis and judgment of gene amplification products
将步骤2.2得到的SRY基因扩增产物进行1.5%琼脂糖凝胶电泳(如图1所示),判断胎儿性别,再对所述PCR扩增产物中的DXS6797、DXS6807和AR基因片段进行STR分析(如图2所示),根据STR分析结果判断所述DNA溶液中是否存在母体遗传物质污染。Perform 1.5% agarose gel electrophoresis on the SRY gene amplification product obtained in step 2.2 (as shown in Figure 1), determine the sex of the fetus, and then perform STR analysis on the DXS6797, DXS6807 and AR gene fragments in the PCR amplification product (As shown in FIG. 2 ), judge whether there is maternal genetic material contamination in the DNA solution according to the STR analysis result.
如图1的所示的琼脂糖凝胶电泳图,第一泳道为DNAMarker,大小为100-700bp,泳道2、3、4分别为胎儿、父亲和母亲SRY的PCR产物电泳图,根据本领域的公知常识可知性别决定基因SRY只存在于Y染色体上,如图1所示的SRY基因的扩增产物条带准确地出现在表示父亲的泳道上,并且条带清晰、无杂带,说明本发明设计的引物对SRY性别决定基因特异性强,可以准确扩增SRY基因;并且图中表示胎儿的泳道没有条带产生,说明胎儿不存在SRY基因,因此判断胎儿为女孩。As shown in Figure 1, the agarose gel electrophoresis figure, the first swimming lane is DNAMarker, the size is 100-700bp, and swimming lanes 2, 3, and 4 are respectively the PCR product electrophoresis figures of fetus, father and mother SRY, according to the standards in the art It is known from common knowledge that the sex-determining gene SRY only exists on the Y chromosome, and the amplified product band of the SRY gene as shown in Figure 1 accurately appears on the swimming lane representing the father, and the band is clear and free of miscellaneous bands, which illustrates the present invention The designed primers have strong specificity to the SRY sex-determining gene, and can accurately amplify the SRY gene; and there is no band in the lane showing the fetus in the figure, indicating that the fetus does not have the SRY gene, so it is judged that the fetus is a girl.
如图2所示的STR分析结果图,可知,本发明设计的引物得到的分析结果图清晰准确,得到的测序结果专一,说明引物的特异性好。其中,图A为DXS6797的峰图,图B是DXS6807的峰图,图C是AR的峰图,图中,从上至下分别为母亲、父亲和胎儿的峰图。图中A可以看出,胎儿的出现了只两个峰,分别出现在294.5与300处,与母亲的294.6处的峰相同,与父亲299.9处的峰相同,且没有出现母亲的另一个峰,说明胎儿具有分别来自父亲和母亲的两条X染色体,为女孩,且不存在母亲遗传物质的污染;图中B可以看出,母亲只出现一个峰,且与父亲的峰为同一位置,胎儿也出现了同样的峰,说明母亲的两个峰发生了重叠,且与父亲位于同一位置,这是由于父亲和母亲的基因决定的;图中C可以看出,胎儿的只出现了两个峰,分别出现在294.5处,与母亲的294.7处的峰位置相同,300位置处的峰与父亲300.2处的峰相同,没有出现母亲的另一个峰,说明胎儿具有分别来自父亲和母亲的两条X染色体,为女孩,且不存在母亲遗传物质的污染,根据本试验结果表明,胎儿细胞中不存在母体遗传物质污染;如果胎儿DNA被污染,则会同时出现母亲的两个峰和父亲的一个峰。As shown in the graph of STR analysis results in FIG. 2 , it can be seen that the graph of the analysis results obtained by the primers designed in the present invention is clear and accurate, and the obtained sequencing results are specific, indicating that the specificity of the primers is good. Among them, Fig. A is the electropherogram of DXS6797, Fig. B is the electropherogram of DXS6807, and Fig. C is the electropherogram of AR. In the figure, from top to bottom are the electropherograms of mother, father and fetus respectively. It can be seen in Figure A that there are only two peaks in the fetus, which appear at 294.5 and 300 respectively, which are the same as the mother's peak at 294.6 and the father's peak at 299.9, and there is no other peak for the mother. It shows that the fetus has two X chromosomes from the father and mother respectively, and is a girl, and there is no pollution of the mother's genetic material; it can be seen in Figure B that the mother only has one peak, and it is at the same position as the father's peak, and the fetus is also The same peak appeared, indicating that the two peaks of the mother overlapped and were located at the same position as the father, which was determined by the genes of the father and mother; it can be seen from C in the figure that only two peaks appeared in the fetus, They appear at 294.5, which is the same as the mother's peak at 294.7, and the peak at 300 is the same as the father's peak at 300.2. There is no other peak for the mother, indicating that the fetus has two X chromosomes from the father and mother , is a girl, and there is no pollution of the mother's genetic material. According to the results of this test, there is no pollution of the mother's genetic material in the fetal cells; if the fetal DNA is contaminated, two peaks of the mother and one peak of the father will appear at the same time.
实施例2羊水胎儿细胞VHL基因点突变、小片段缺失或插入以及剪切位点突变的检测Example 2 Detection of VHL gene point mutations, small fragment deletions or insertions, and splicing site mutations in amniotic fluid fetal cells
本实施例是通过扩增待测DNA中VHL基因的三个外显子,经测序仪获得待测样本的外显子基因序列,与基因库中的VHL基因进行比对,分析序列是否发生了点突变、小片段缺失或插入以及剪切位点突变等突变。具体方法如下:In this embodiment, by amplifying the three exons of the VHL gene in the DNA to be tested, the exon gene sequence of the sample to be tested is obtained by a sequencer, compared with the VHL gene in the gene bank, and analyzed whether the sequence has occurred Point mutations, small fragment deletions or insertions, and splice site mutations. The specific method is as follows:
1、设计扩增引物1. Design amplification primers
根据VHL基因的三个外显子VHL-1、VHL-2、VHL-3设计扩增引物对5-6:According to the three exons VHL-1, VHL-2, VHL-3 of the VHL gene, the amplification primer pair 5-6 is designed:
扩增引物对5:VHL-1F5’-ggtggtctggatcgcgga-3’Amplification primer pair 5: VHL-1F5'-ggtggtctggatcgcgga-3'
VHL-1R5’-ggcttcagaccgtgctatcg-3’VHL-1R5'-ggcttcagaccgtgctatcg-3'
扩增引物对6:VHL-2F5’-gtggctctttaacaacctttgc-3’Amplification primer pair 6: VHL-2F5'-gtggctctttaacaacctttgc-3'
VHL-2R5’-cctgtacttaccacaacaaccttatc-3’VHL-2R5'-cctgtacttaccacaacaaccttatc-3'
扩增引物对7:VHL-3F5’-gcaaagcctcttgttcgttc-3’Amplification primer pair 7: VHL-3F5'-gcaaagcctcttgttcgttc-3'
VHL-3R5’-caaaaatgccaccaccttct-3’。VHL-3R5'-caaaaatgccaccaccttct-3'.
2、检测VHL基因点突变、小片段缺失或插入以及剪切位点突变2. Detection of VHL gene point mutations, small fragment deletions or insertions, and splicing site mutations
以实施例1中得到的羊水细胞的DNA为模板,以所述扩增引物对5-7为引物建立扩增反应体系,其中,反应体系的总体积为25μl,包括12.5μl的PCRmix(选用北京全式金生物技术有限公司生产的PCRSuperMixAS111)、100ng的DNA模板、浓度是5pmol/μl的引物各1μl,ddH2O余量。反应条件为:94℃预变性10min,94℃变性30s,58℃退火30s,72℃延伸30s,30个循环后,72℃复性5min,4℃保存,得到胎儿DNA的VHL基因的三个外显子的扩增产物,将扩增后的VHL基因的外显子产物送至北京诺塞基因组研究中心有限公司进行纯化处理,并使用ABI3730测序仪测序,得到测序结果,如图3所示,根据测序结果分析判断VHL基因是否发生了点突变、剪切位点突变、小片段缺失或插入等。Using the amniotic fluid cell DNA obtained in Example 1 as a template, and using the amplification primer pair 5-7 as primers, an amplification reaction system was established, wherein the total volume of the reaction system was 25 μl, including 12.5 μl of PCRmix (selected from Beijing Produced by Quanshijin Biotechnology Co., Ltd. PCRSuperMixAS111), 100 ng of DNA template, 1 μl each of primers at a concentration of 5 pmol/μl, and the remainder of ddH 2 O. The reaction conditions are: pre-denaturation at 94°C for 10 min, denaturation at 94°C for 30 s, annealing at 58°C for 30 s, extension at 72°C for 30 s, after 30 cycles, renaturation at 72°C for 5 min, and storage at 4°C to obtain three exosomes of the VHL gene of fetal DNA. For the amplified product of the exon, the exon product of the amplified VHL gene was sent to Beijing Nuosai Genome Research Center Co., Ltd. for purification, and sequenced using the ABI3730 sequencer to obtain the sequencing result, as shown in Figure 3. According to the analysis of the sequencing results, it is judged whether there are point mutations, splicing site mutations, small fragment deletions or insertions, etc. in the VHL gene.
3、检测结果3. Test results
如图3所示的测序结果图,每对碱基的峰图清晰可见,且无杂峰出现,表明本发明设计的引物特异性好,从图3可以看出,羊水中胎儿细胞的VHL基因出现了c.499C>Tp.Arg167Trp突变,即在VHL基因的第3外显子中的第499bp处存在由C至T的突变,导致VHL蛋白第167位氨基酸由精氨酸Arg变为色氨酸Trp。As shown in Fig. 3, the peak diagram of each pair of bases is clearly visible, and no miscellaneous peaks appear, indicating that the primers designed by the present invention have good specificity. As can be seen from Fig. 3, the VHL gene of fetal cells in amniotic fluid The c.499C>Tp.Arg167Trp mutation appeared, that is, there was a mutation from C to T at the 499bp in the 3rd exon of the VHL gene, resulting in the 167th amino acid of the VHL protein changing from arginine Arg to tryptophan Sour Trp.
根据实施例1得到的检测结果,发现羊水中胎儿细胞中不存在母体遗传物质的污染,因此本实施例的检测结果是准确的。According to the test results obtained in Example 1, it was found that there is no contamination of maternal genetic material in the fetal cells in the amniotic fluid, so the test results in this example are accurate.
实施例3荧光原位杂交探针的制备The preparation of embodiment 3 fluorescent in situ hybridization probes
1、荧光原位杂交探针基因序列的筛选1. Screening of fluorescent in situ hybridization probe gene sequences
在人类基因组中筛选用作荧光原位杂交探针的VHL基因序列,选择兼顾特异性和可行性的探针序列作为荧光原位杂交探针基因序列。The VHL gene sequence used as a fluorescent in situ hybridization probe is screened in the human genome, and the probe sequence with both specificity and feasibility is selected as the fluorescent in situ hybridization probe gene sequence.
VHL基因定位于常染色体3p25-26区,包含三个外显子,检索ΜCSCgenomebrowser、NCBICloneRegistry、EnsemblGenomeBrowser数据库所有含有VHL基因的序列,筛选含有上述外显子的最优基因序列,并编号为1号外显子VHL-Exon1、2号外显子VHL-Exon2、3号外显子VHL-Exon3。The VHL gene is located in the autosome 3p25-26 region and contains three exons. Search all the sequences containing the VHL gene in the MCSCgenomebrowser, NCBICloneRegistry, and EnsemblGenomeBrowser databases, screen the optimal gene sequence containing the above exons, and number it as exon 1. Sub-VHL-Exon1, No. 2 exon VHL-Exon2, No. 3 exon VHL-Exon3.
2、杂交探针的制备2. Preparation of hybridization probes
2.1目的基因序列的克隆2.1 Cloning of target gene sequence
根据编号VHL-Exon1、VHL-Exon2、VHL-Exon3的基因序列,分别设计克隆引物对11-13:According to the gene sequences numbered VHL-Exon1, VHL-Exon2, and VHL-Exon3, respectively design cloning primer pairs 11-13:
克隆引物对11F:5’-aaccttagaggggcgaaaaaCloning primer pair 11F: 5'-aaccttagaggggcgaaaaa
R:5’-gcttcagaccgtgctatcgtR: 5'-gcttcagaccgtgctatcgt
克隆引物对12F:5’-aacctttgcttgtcccgataCloning primer pair 12F: 5'-aacctttgcttgtcccgata
R:5’-ttatcagagtgggtggcacaR: 5'-ttatcagagtgggtggcaca
克隆引物对13F:5’-gcaaagcctcttgttcgttcCloning primer pair 13F: 5'-gcaaagcctcttgttcgttc
R:5’-cagtcttcccaaagcaggag。R: 5'-cagtcttcccaaagcaggag.
以提取正常人血液中的DNA溶液为模板,以克隆引物对11-13为引物,利用PCR反应分别扩增目的基因,其中,反应体系是:总体积50μl,PCRmix25μl,DNA模板100ng,克隆引物各2μl,ddH2O余量,反应条件是:94℃预变性10min,94℃变性30s,58℃退火30s,72℃延伸60s,30个循环,72℃复性7min,4℃保存,得到基因片段。Using DNA solution extracted from normal human blood as a template and cloning primer pairs 11-13 as primers, PCR reactions were used to amplify target genes respectively. The reaction system was: total volume 50 μl, PCR mix 25 μl, DNA template 100ng, cloning primers each 2 μl, ddH2O balance, the reaction conditions are: 94°C pre-denaturation for 10 minutes, 94°C denaturation for 30 seconds, 58°C annealing for 30 seconds, 72°C extension for 60 seconds, 30 cycles, 72°C renaturation for 7 minutes, and 4°C storage to obtain gene fragments.
2.2、构建含有目的基因的质粒2.2. Construction of a plasmid containing the target gene
将步骤2.1得到的基因片段连接到pBlμescript质粒中,其中连接反应的反应体系如表1所示。The gene fragment obtained in step 2.1 was ligated into the pBlμescript plasmid, wherein the reaction system of the ligation reaction is shown in Table 1.
表1构建质粒的反应体系Table 1 Reaction system for constructing plasmids
将上述反应体系在室温条件下反应2h,得到含有目的基因片段的质粒。The above reaction system was reacted at room temperature for 2 hours to obtain a plasmid containing the target gene fragment.
2.3、质粒的转化、培养与提取2.3 Transformation, cultivation and extraction of plasmids
将预先培养在LB培养基上的大肠杆菌换至新的LB培养基上进行培养,培养条件为28℃,所述LB培养基由胰蛋白胨10g/L,酵母提取物5g/L,氯化钠10g/L,琼脂粉15g/L组成,备用;再将含有目的基因的质粒采用电转的方式(将该大肠杆菌通过氯化钙处理制备感受态细胞采用热激发进行转化同样适用于本发明)转化到大肠杆菌中,将大肠杆菌涂布接种于LB固体培养基上培养,挑单菌落并接种于10mlLB液体培养基中进行摇菌培养,所述LB液体培养基成分由胰蛋白胨10g/L,酵母提取物5g/L,氯化钠10g/L组成,其中,培养温度是37℃,转速是220r/min,摇床培养8~16h,随后采用质粒纯化试剂盒对该质粒进行提取,操作流程按试剂盒的说明书进行。The Escherichia coli pre-cultured on the LB medium was replaced with a new LB medium for cultivation, and the culture condition was 28°C. The LB medium was composed of tryptone 10g/L, yeast extract 5g/L, sodium chloride 10g/L, composed of agar powder 15g/L, for subsequent use; then the plasmid containing the target gene is transformed by electroporation (the Escherichia coli is treated with calcium chloride to prepare competent cells and transformed by heat excitation, which is also applicable to the present invention) transformation In Escherichia coli, spread and inoculate Escherichia coli on LB solid medium for culture, pick a single colony and inoculate it in 10ml LB liquid medium for shaking culture, the LB liquid medium composition consists of tryptone 10g/L, yeast The extract is composed of 5g/L and sodium chloride 10g/L. The culture temperature is 37°C, the rotation speed is 220r/min, and the shaking table is cultivated for 8-16h, and then the plasmid is extracted with a plasmid purification kit. The operation process is as follows: kit instructions.
需要说明的是,所述质粒纯化试剂盒可以是任意一种可以对质粒进行提取和纯化的试剂盒,根据本发明的实施例,本发明所使用的质粒纯化试剂盒使用GeneMark公司生产的质粒纯化试剂盒。It should be noted that the plasmid purification kit can be any kit that can extract and purify the plasmid. According to an embodiment of the present invention, the plasmid purification kit used in the present invention uses the plasmid purification kit produced by GeneMark. Reagent test kit.
2.4质粒中目的基因的鉴定2.4 Identification of the target gene in the plasmid
通过PCR的方法扩增质粒,再对扩增产物进行电泳验证。其中反应体系是:The plasmid was amplified by PCR, and the amplified product was verified by electrophoresis. Wherein the reaction system is:
反应条件是:The reaction conditions are:
将获得的PCR产物进行1%的琼脂糖凝胶电泳,在紫外灯下观察电泳结果,判断扩增产物大小是否正确,从而验证目的基因是否在大肠杆菌中正确表达。Perform 1% agarose gel electrophoresis on the obtained PCR products, and observe the electrophoresis results under ultraviolet light to judge whether the size of the amplified product is correct, thereby verifying whether the target gene is correctly expressed in E. coli.
经验证,发现扩增产物在600-700bp之间,与预期扩增产物大小一致,因此可知该目的基因已经在大肠杆菌中正确表达。挑取步骤2.4中正确表达目的基因的单菌落大肠杆菌,并接种于2mlLB培养液中,37℃温度条件下,以220r/min的转速进行摇床培养8~16h,取100μl大肠杆菌菌液送至北京诺塞基因组研究中心有限公司测序,从而进一步验证质粒中是否含有完全正确的目的基因序列片段。After verification, it was found that the amplified product was between 600-700bp, which was consistent with the size of the expected amplified product, so it was known that the target gene had been correctly expressed in E. coli. Pick a single colony of Escherichia coli that correctly expresses the target gene in step 2.4, inoculate it in 2ml of LB culture medium, and culture it on a shaking table at a speed of 220r/min at a temperature of 37°C for 8-16 hours, take 100μl of the Escherichia coli liquid and send it to Sequenced by Beijing Nuosai Genome Research Center Co., Ltd., so as to further verify whether the plasmid contains completely correct sequence fragments of the target gene.
2.5荧光原位杂交探针溶液的制备2.5 Preparation of fluorescence in situ hybridization probe solution
取步骤2.4得到的含有完全正确的目的基因的质粒,用超纯水稀释1000倍后作为制备荧光探针的模板,使用Flμorescein-dUTP试剂,通过PCR法制备荧光探针。Take the plasmid containing the completely correct target gene obtained in step 2.4, dilute it 1000 times with ultrapure water, and use it as a template for preparing fluorescent probes, and use Flμorescein-dUTP reagent to prepare fluorescent probes by PCR.
其中,设计的探针引物对8-10为:Wherein, the designed probe primer pair 8-10 is:
探针引物85’-agtaacgagttggcctagcctcgProbe primer 85'-agtaacgagttggcctagcctcg
5’-cgtcttcttcagggccgtactc5'-cgtcttcttcagggccgtactc
探针引物95’-gtactgacgttttactttttaaaaagataaggProbe primer 95'-gtactgacgttttactttttaaaaagataagg
5’-catgctctacacattgttctcctgg5'-catgctctacacattgttctcctgg
探针引物105’-gcattgcacatcaacggatProbe primer 105'-gcattgcacatcaacggat
5’-cagtcttcccaaagcaggag。5'-cagtcttcccaaagcaggag.
反应体系是:The reaction system is:
反应条件是:The reaction conditions are:
2.6测定荧光原位杂交探针的含量2.6 Determination of fluorescence in situ hybridization probe content
制备不带荧光的原位杂交探针作为标准品,采用聚丙烯酰胺胶垂直电泳技术定量荧光探针的浓度。In situ hybridization probes without fluorescence were prepared as standards, and the concentration of fluorescent probes was quantified by polyacrylamide gel vertical electrophoresis.
标准品的制备采用步骤2.5的反应体系进行PCR,得到PCR产物,其中,反应体系中不含有荧光dUTP试剂。将获得的PCR产物进行纯化处理后,制备DNA含量分别为100ng、50ng、25ng、12.5ng的探针标准品,取步骤2.5得到的PCR产物5μl,与探针标准品进行丙烯酰胺胶垂直电泳,通过测定电泳产物的光密度值计算步骤2.5得到的5μlPCR产物中含有的荧光探针的量,推知剩余的45μ的PCR产物溶液中荧光探针的含量。The preparation of the standard product is carried out by PCR using the reaction system in step 2.5 to obtain a PCR product, wherein the reaction system does not contain fluorescent dUTP reagent. After purifying the obtained PCR products, prepare probe standards with DNA contents of 100ng, 50ng, 25ng, and 12.5ng respectively, take 5 μl of the PCR products obtained in step 2.5, and perform vertical electrophoresis on acrylamide gel with the probe standards. Calculate the amount of fluorescent probe contained in 5 μl of PCR product obtained in step 2.5 by measuring the optical density value of the electrophoresis product, and infer the content of fluorescent probe in the remaining 45 μl of PCR product solution.
2.7荧光杂交探针的纯化与杂交探针溶液的制备2.7 Purification of fluorescent hybridization probes and preparation of hybridization probe solutions
向剩余的45μl经步骤2.6得到的PCR产物中加入100μlTE,混匀后加15μl乙酸钠、410μl无水乙醇,混匀后在-20℃的温度条件下避光放置30min,4℃13500r/min离心15min,弃上清,再加入500μl、75%乙醇,颠倒数次后离心2min,弃上清,开盖避光放置晾干,加入以体积比为5:1:1:3的甲酰胺、20×SSC、硫酸葡聚糖和水配制而成的杂交液使探针浓度达8-20ng/μl,并于-20℃的温度条件下保存,得到荧光杂交探针。Add 100 μl TE to the remaining 45 μl of the PCR product obtained in step 2.6, mix well, add 15 μl sodium acetate and 410 μl absolute ethanol, mix well, place in the dark at -20°C for 30 minutes, and centrifuge at 13500 r/min at 4°C 15min, discard the supernatant, then add 500μl, 75% ethanol, invert several times and centrifuge for 2min, discard the supernatant, open the cover and place it in the dark to dry, add formamide with a volume ratio of 5:1:1:3, 20 The hybridization solution prepared by ×SSC, dextran sulfate and water makes the concentration of the probe reach 8-20ng/μl, and is stored at -20°C to obtain the fluorescent hybridization probe.
需要说明的是,该步骤也可以使探针浓度达到在10~15ng/μl的浓度范围。It should be noted that this step can also make the probe concentration reach a concentration range of 10-15 ng/μl.
实施例4胎儿细胞VHL基因大片段缺失的检测Example 4 Detection of Large Fragment Deletion of Fetal Cell VHL Gene
1细胞涂片的制作1 Preparation of cell smears
将实施例1得到的羊水细胞进行传代培养,获得足量的胎儿细胞,作为待测样本。其中,羊水细胞培养在包含74%的hyclonedmem/f12培养基、25%胎牛血清FBS和1%的青霉素和链霉素双抗PS的胎儿细胞培养液中,培养温度为37℃,空气条件为5%的CO2。将胎儿细胞进行离心后,经漂洗、低渗、固定后制成细胞涂片。为验证本实验的准确性,抽取已确诊为VHL基因大片段缺失患者的外周血3ml作为阳性对照,抽取正常人的外周血3ml作为阴性对照,用淋巴细胞分离液处理阳性对照和阴性对照的外周血,得到细胞层,将细胞层进行漂洗处理和低渗处理后,用固定液固定,滴片制成细胞涂片。具体操作步骤如下:Subculture the amniotic fluid cells obtained in Example 1 to obtain a sufficient amount of fetal cells as samples to be tested. Among them, the amniotic fluid cells were cultured in fetal cell culture medium containing 74% hyclonedmem/f12 medium, 25% fetal bovine serum FBS and 1% penicillin and streptomycin double antibody PS, the culture temperature was 37°C, and the air condition was 5% CO 2 . After the fetal cells are centrifuged, they are rinsed, hypotonic, and fixed to make a cell smear. In order to verify the accuracy of this experiment, 3ml of peripheral blood from patients diagnosed with large fragment deletion of VHL gene was taken as positive control, 3ml of peripheral blood from normal people was taken as negative control, and the peripheral blood of positive control and negative control were treated with lymphocyte separation medium. For the blood, the cell layer is obtained, and after the cell layer is rinsed and treated with hypotonicity, it is fixed with a fixative solution, and the cell smear is made into a drop sheet. The specific operation steps are as follows:
1.1对照样本细胞悬浮液的制备1.1 Preparation of control sample cell suspension
取3ml淋巴细胞分离液至15ml塑胶管中,将3ml的外周血与1.5mlPBS缓冲液混匀后沿所述塑胶管管壁缓慢加于淋巴细胞分离液之上,以2500r/min的速率离心处理30min后,吸出位于中间部分的絮状悬浮淋巴细胞,得到细胞悬浮液。Take 3ml of lymphocyte separation solution into a 15ml plastic tube, mix 3ml of peripheral blood with 1.5ml of PBS buffer, then slowly add to the lymphocyte separation solution along the wall of the plastic tube, and centrifuge at a speed of 2500r/min After 30 minutes, the flocculent suspended lymphocytes located in the middle part were sucked out to obtain a cell suspension.
1.2羊水细胞与对照细胞悬浮液的处理与滴片1.2 Treatment and dripping of amniocytes and control cell suspensions
将获得的羊水细胞与对照细胞悬浮液置于新的15ml塑胶管中,并向其中加入3倍体积的PBS,混匀后,以1800r/min的速率离心处理10min,弃上清,再加入5mlPBS,混匀,以1500r/min的速率离心处理10min后,弃尽上清。再加入预温至37℃的0.075M的KCl6-8ml进行低渗处理,在37℃温度条件下吹打混匀20min后,再加入2ml由甲醇和冰醋酸按3:1体积配制而成的固定液,再混匀、以1000r/min的转速离心10min,弃上清,再加入5-8ml同样的固定液,所述固定液先少量加入,吹匀后再全量加入,混匀后再以1000r/min的速率离心10min,弃上清,并重复加固定液和离心步骤2-3次,至细胞呈白色,最后再加入少量的固定液,混匀,当管内物质呈稀米汤样时,将其滴于乙醇浸泡过的洁净无脂载玻片上。Put the obtained amniotic fluid cell and control cell suspension into a new 15ml plastic tube, and add 3 times the volume of PBS to it, mix well, centrifuge at 1800r/min for 10min, discard the supernatant, and then add 5ml of PBS , mix well, centrifuge at 1500r/min for 10min, discard the supernatant. Then add 0.075M KCl 6-8ml pre-warmed to 37°C for hypotonic treatment, blow and mix at 37°C for 20 minutes, then add 2ml of fixative solution prepared by methanol and glacial acetic acid in a volume ratio of 3:1 , then mix well, centrifuge at a speed of 1000r/min for 10min, discard the supernatant, and then add 5-8ml of the same fixative, the fixative is first added in a small amount, blown and then added in full, and then mixed with 1000r/min Centrifuge at a speed of 10 min, discard the supernatant, and repeat the steps of adding fixative and centrifugation 2-3 times until the cells turn white, and finally add a small amount of fixative, mix well, and when the substance in the tube is like dilute rice soup, remove it Drop onto clean, fat-free glass slides soaked in ethanol.
1.3羊水细胞与对照细胞的老化和透化处理1.3 Aging and permeabilization of amniocytes and control cells
将上述载玻片在烤片机上56℃烤片20min(将该玻片在室温条件下过夜老化同样适用于本发明)后,再依次置于预温为37℃的2×SSC10min、预温至37℃的胃酶中2min,最后在2×SSC中涮一下,倒立在卫生纸上吸干,再分别放入70%、85%、100%酒精中各脱水3min,倒立在卫生纸上晾干,得到老化和透化处理的细胞涂片。After the above-mentioned slides were baked at 56°C for 20 minutes on a roaster (the overnight aging of the slides at room temperature is also applicable to the present invention), they were then placed in 2×SSC with a preheating temperature of 37°C for 10 minutes, and then preheated to 37°C. 2 minutes in gastric enzymes at 37°C, rinsed in 2×SSC at last, blotted upside down on toilet paper, then dehydrated in 70%, 85% and 100% alcohol for 3 minutes each, stood upside down on toilet paper to dry, and obtained Aged and permeabilized cell smear.
2、荧光原位杂交探针与细胞的杂交2. Hybridization of fluorescence in situ hybridization probes with cells
取10ul的荧光原位杂交探针溶液,滴加于细胞涂片上,并立即盖上盖玻片,用封片胶封边,放置于杂交仪中杂交,杂交反应的共变性温度是70-80℃,共变性反应时间是5-10min,杂交温度是40-46℃,杂交时间是14-18h。Take 10ul of fluorescent in situ hybridization probe solution, drop it on the cell smear, cover it with a cover glass immediately, seal the edge with mounting glue, and place it in a hybridization instrument for hybridization. The co-denaturation temperature of the hybridization reaction is 70- 80°C, the co-denaturation reaction time is 5-10min, the hybridization temperature is 40-46°C, and the hybridization time is 14-18h.
需要说明的是,杂交反应条件的共变性温度还可以是73-76℃,共变性时间还可以是7-8min;杂交温度还可以是42-44℃,杂交时间还可以是16h。It should be noted that the co-denaturation temperature of the hybridization reaction conditions can also be 73-76°C, and the co-denaturation time can also be 7-8min; the hybridization temperature can also be 42-44°C, and the hybridization time can also be 16h.
3、杂交后的洗片处理3. Washing after hybridization
小心揭去封片胶和盖玻片后,将载玻片依次置于已经预热为68℃的用0.4×SSC配制的0.3%的NP40溶液中漂洗1.5~2min分钟(同样的,将其置于预热温度为46℃的0.4×SSC配制的0.3%的NP40溶液中漂洗3min依然适用于本发明),室温条件下的2×SSC配制的0.1%的NP40溶液中漂洗30s,最后在70%的酒精中漂洗3min,洗去未结合的荧光探针后,将载玻片晾干,得到纯净的与荧光探针结合的细胞玻片。After carefully peeling off the mounting glue and cover glass, rinse the slides in the 0.3% NP40 solution prepared with 0.4×SSC that has been preheated to 68°C for 1.5-2 minutes (similarly, put them in the In the 0.3% NP40 solution prepared by 0.4×SSC at a preheating temperature of 46° C., rinsing for 3 minutes is still applicable to the present invention), rinsing for 30 seconds in the 0.1% NP40 solution prepared by 2×SSC at room temperature, and finally at 70% Rinse in ethanol for 3 minutes to wash off unbound fluorescent probes, and then dry the slides to obtain pure cell slides bound to fluorescent probes.
4、观察细胞与荧光探针结合情况4. Observe the combination of cells and fluorescent probes
向上述细胞玻片中加入3μlDAPI,立即盖上盖玻片,用荧光显微镜观察细胞核内的荧光杂交信号情况并计200个细胞中异常细胞所占的百分比,得到异常细胞的百分比。Add 3 μl DAPI to the above cell slide, immediately cover with a cover glass, observe the fluorescent hybridization signal in the nucleus with a fluorescence microscope and calculate the percentage of abnormal cells among the 200 cells to obtain the percentage of abnormal cells.
细胞核内的荧光杂交信号如图所示,图4为待测样本的荧光杂交信号图,具有两个荧光亮点,图5为阳性对照样本的荧光杂交信号图,只有一个荧光亮点,图6为阴性对照样本的荧光杂交信号图,具有两个荧光亮点。The fluorescent hybridization signal in the nucleus is shown in the figure. Figure 4 is the fluorescent hybridization signal diagram of the sample to be tested, with two fluorescent bright spots. Figure 5 is the fluorescent hybridization signal diagram of the positive control sample, with only one fluorescent bright spot, and Figure 6 is negative. Fluorescent hybridization signal plot of a control sample, with two fluorescent bright spots.
5、标准阈值建立和结果判读5. Standard threshold establishment and result interpretation
5.1标准阈值建立5.1 Standard Threshold Establishment
依照常规的标准阈值检测建立方法,采集健康者的血液样本20例,每份样本观察200个细胞,统计异常细胞的数量和百分比;显示两个荧光信号的为正常细胞,显示小于两个绿色信号的为异常细胞;计算20份样本中异常细胞百分比的平均值和标准差,进而计算阈值(阈值=平均值+3×标准差)。According to the conventional standard threshold detection method, collect 20 blood samples from healthy people, observe 200 cells in each sample, and count the number and percentage of abnormal cells; normal cells that show two fluorescent signals are normal cells, and those that show less than two green signals abnormal cells; calculate the mean and standard deviation of the percentage of abnormal cells in 20 samples, and then calculate the threshold (threshold = mean + 3 × standard deviation).
5.2结果判读5.2 Interpretation of results
计数200个杂交信号清晰可判读的细胞,将异常细胞比例与阈值比较判断VHL基因异常情况,如果等于阈值,需加大细胞计数。Count 200 cells with clear and readable hybridization signals, and compare the proportion of abnormal cells with the threshold value to determine the abnormality of the VHL gene. If it is equal to the threshold value, increase the cell count.
若待测样本观察得到的异常细胞所占总细胞的百分比小于阈值,则表明待测样本细胞没有发生基因大片段缺失;反之,若待测样本观察得到的异常细胞所占总细胞的百分比大于阈值,则表明待测样本细胞发生基因大片段缺失。If the percentage of abnormal cells in the total cells observed in the sample to be tested is less than the threshold value, it indicates that the cells in the sample to be tested have no gene fragment deletion; on the contrary, if the percentage of abnormal cells in the total cells observed in the sample to be tested is greater than the threshold value , it indicates that a large gene fragment deletion occurs in the sample cells to be tested.
根据本发明计算得到的待测样本异常细胞所占总细胞的百分比为4.8%,标准阈值是5.6%,因此待测样本的异常细胞所占百分比小于标准阈值,判定待测样本没有发生VHL基因发生大片段缺失。The percentage of abnormal cells in the sample to be tested calculated according to the present invention is 4.8% of the total cells, and the standard threshold is 5.6%. Therefore, the percentage of abnormal cells in the sample to be tested is less than the standard threshold, and it is determined that the sample to be tested has no VHL gene occurrence. Large fragments are missing.
根据实施例1得到的检测结果,发现羊水细胞中不存在母体遗传物质的污染,因此对羊水细胞进行VHL基因突变检测的结果是准确的。According to the test results obtained in Example 1, it is found that there is no contamination of maternal genetic material in the amniotic fluid cells, so the result of the VHL gene mutation detection of the amniotic fluid cells is accurate.
尽管上述对本发明做了详细说明,但不限于此,本技术领域的技术人员可以根据本发明的原理进行修改,因此,凡按照本发明的原理进行的各种修改都应当理解为落入本发明的保护范围。Although the present invention has been described in detail above, it is not limited thereto. Those skilled in the art can make modifications according to the principle of the present invention. scope of protection.
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