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AU2017271189B2 - Cytosol-penetrating antibody and use thereof - Google Patents

Cytosol-penetrating antibody and use thereof Download PDF

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AU2017271189B2
AU2017271189B2 AU2017271189A AU2017271189A AU2017271189B2 AU 2017271189 B2 AU2017271189 B2 AU 2017271189B2 AU 2017271189 A AU2017271189 A AU 2017271189A AU 2017271189 A AU2017271189 A AU 2017271189A AU 2017271189 B2 AU2017271189 B2 AU 2017271189B2
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gly
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tyr
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AU2017271189A1 (en
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Ji Sun Kim
Yong Sung Kim
Jae Yeong Park
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Orum Therapeutics Inc
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Orum Therapeutics Inc
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Priority claimed from KR1020160065365A external-priority patent/KR102000000B1/en
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Priority claimed from KR1020170065670A external-priority patent/KR20180129514A/en
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/46Hybrid immunoglobulins
    • C07K16/461Igs containing Ig-regions, -domains or -residues form different species
    • C07K16/464Igs containing CDR-residues from one specie grafted between FR-residues from another
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/28Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
    • C07K16/30Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/32Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products of oncogenes
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/505Medicinal preparations containing antigens or antibodies comprising antibodies
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/20Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/24Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/515Complete light chain, i.e. VL + CL
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    • C07K2317/80Immunoglobulins specific features remaining in the (producing) cell, i.e. intracellular antibodies or intrabodies
    • C07K2317/82Immunoglobulins specific features remaining in the (producing) cell, i.e. intracellular antibodies or intrabodies functional in the cytoplasm, the inner aspect of the cell membrane, the nucleus or the mitochondria
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    • C07K2317/94Stability, e.g. half-life, pH, temperature or enzyme-resistance

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Abstract

The present invention relates to a cytosol-penetrating antibody and a use thereof, and specifically, to a light chain variable region and/or heavy chain variable region positioned in a cytosol, a cytosol-penetrating antibody containing same, a method for producing same, and a use thereof, wherein the light chain variable region and/or heavy chain variable region exhibit notably enhanced endosomal escape efficiency as a result of an investigation of a structural mechanism for inducing endosomal escape which is the escape from an endosome to a cytosol after cellular internalization through a membrane protein of a cell membrane of a living cell.

Description

CYTOSOL-PENETRATING ANTIBODY AND USE THEREOF TECHNICAL FIELD
The present disclosure relates to a cytosol-penetrating
antibody and the use thereof, and more particularly to an
endosomal escape motif which can increase the endosomal
escape efficacy of a cytosol-penetrating antibody
(Cytotransmab) so as to have a significantly improved ability
to escape from endosomes into the cytosol after cellular
internalization into living cells through a cell membrane
protein, a light-chain variable region and/or heavy-chain
variable region comprising the same, a cytosol-penetrating
antibody comprising the same, a method for producing the same,
and the use thereof.
BACKGROUND ART
General antibodies and macromolecular bio-drugs have
limitations in that they cannot pass the hydrophobic cell
membrane, and thus cannot bind to and inhibit various
disease-related substances. In addition, conventional
antibodies cannot directly penetrate living cells due to
their large size and hydrophilic nature.
Thus, most conventional antibodies specifically target
extracellularly secreted proteins or cell membrane proteins.
Further, generally, commercial antibodies binding
specifically to intracellular substances which are used in
experiments for studies on mechanisms such as the growth,
specific inhibition, etc. of cells, cannot be used directly
to treat living cells, and in order for these antibodies to
bind to intracellular substances, a pretreatment process for
forming pores in the cell membrane by a cell membrane
permeabilization process using the amphipathic glycoside
saponin is necessarily required.
A number of therapeutic antibodies that target cell
membrane proteins or extracellularly secreted proteins due to
their property of binding to target proteins with high
specificity and high affinity have been developed. Antibodies
that target cell membrane proteins can bind to cell membrane
proteins, and then enter the cells via an endosomal pathway
through a receptor-mediated endocytosis process.
This process includes various pathways after the early
endosome stage. That is, 1) most antibodies can be
transported from early endosomes to late endosomes and
lysosomes, and can be completely degraded by proteases under
acidic conditions; and 2) some antibodies can bind to FcRn
(neonatal Fc receptor) in early endosomes under acidic
conditions and come out of the cells through the recycling
endosome pathway.
Thus, most antibodies bind strongly to the target
membrane proteins and are mostly degraded through the
lysosomal pathway. In the endosomal pathway, endosomes are
matured while the inside thereof is gradually acidified by
proton pumps. It is known that the pH of early endosomes is
about 5.5-6.5, the pH of late endosomes is about 4.5-5.5, and
the pH of lysosomes is about pH 3.5-4.5 (Quadir MA et al.,
2014; Li S et al., 2014). Many proteinases in endosomes are
activated, and endocytosed proteins are degraded in endosomes.
Consequently, when antibodies move through the endosomal
pathway after receptor-mediated endocytosis, they should be
separated from the target membrane proteins and form pores in
endosomes in order to escape from early or late endosomes
into the cytosol before trafficking to lysosomes.
Among naturally occurring intracellular substances,
viruses and toxins are known to actively penetrate living
cells through endocytosis. "Endosomal escape", a process of
escaping from endosomes into the cytosol, is essential so
that a substance that penetrated into cells by endocytosis
exhibits activity in the cytosol.
Although the endosomal escape mechanism has not yet been
clearly found, three hypotheses for the endosomal escape are
known to date.
The first hypothesis is a mechanism by which a pore is
formed in the endosomal membrane. In this hypothesis, substances such as cationic amphiphilic peptides in the endosomal membrane bind to a negatively charged cellular lipid bilayer to cause internal stress or inner membrane contraction to thereby form a barrel-stave pore or a toroidal channel (Jenssen et al., 2006), which is called a pore formation mechanism.
The second hypothesis is a mechanism by which the
endosome bursts as a consequence of the proton-sponge effect.
In this hypothesis, due to the high buffering effect of a
substance having a protonated amino group, the osmotic
pressure of the endosome can be increased so that the
endosomal membrane can be degraded (Lin and Engbersen, 2008).
In the third hypothesis, a specific motif, which
maintains a hydrophilic coil shape in a neutral environment
but is changed into a hydrophobic helical structure in an
acidic environment such as endosome, is fused to the
endosomal membrane so that viruses and toxins including a
motiff escape from the endosome, which is called a lipid
membrane fusion mechanism. These three hypothese has been
proposed as endosome escape mechanisms after endocytosis of a
viral protein and a toxic protein derived from
plants/bacteria, but such endosome escape mechanism in
antibodies has not been specifically identified yet.
The common phenomenon observed in the above-described
endosomal escape mechanism is that endosomal escape occurs under acidic pH conditions which are endosomal and lysosomal environments. Proteins whose function changes depending on pH have the property of changing their structure depending on pH.
Negatively charged amino acids (aspartic acid (D) and
glutamic acid (E)) and hydrophobic amino acids (methionine
(M), leucine (L), and isoleucine (I)) do not interact under
neutral pH conditions. However, as pH decreases, the
carboxylic acids (COO-) in the side chains of the negatively
charged amino acids become hydrophobic by protonation (Korte
et al., 1992), and then can hydrophobically interact with the
surrounding hydrophobic amino acids. As a result, the
distance between the two amino acids becomes closer, and the
overall structure and function of the protein change. The
phenomenon that causes this change is known as the Tanford
transition (Qin et al., 1998).
As one example, nitrophorin 4, a nitrogen transporting
enzyme, has an open structure under neutral pH conditions.
However, as the pH decreases from neutral pH (pH 7.4) to
weakly acidic pH (pH 6.0), the structure of nitrophorin 4
changes to a closed structure by the hydrophobic interaction
of aspartic acid and leucine, and thus nitrophorin 4
functions to transport nitrogen (Di Russo et al., 2012).
However, this pH-dependent structural change has not yet
been found in antibodies. In particular, this change has not
yet been observed in antibodies that undergo endocytosis.
As one example, an antibody engineering improvement
technology for inducing pH-dependent antigen binding among
conventional antibody technologies is a method of screening
pH-dependent antigen-binding antibodies from libraries
introduced either with histidine (H) of CDRs (complementary
determining regions) or with random mutations including
histidine (Bonvin P et al., 2015). However, the two methods
all cause no structural change, and have a limitation in that
library-based screening should be performed in order to
induce pH-dependent antigen binding.
In order to increase the effect of a substance that
exhibits its activity in the cytosol, the amount of the
substance located in the cytosol should ultimately increase.
Hence, studies have been conducted to increase the endosomal
escape ability. Such studies have been conducted mainly on
cell-penetrating peptides (CPPs). Although it has been
reported that some cell-penetrating peptides localize in the
cytosol through an endosomal escape pathway, there is no
detailed study on an exact endosomal escape mechanism, and it
is known that only about 0.1 to 4% of endocytosed peptides
localize to the cytosol due to very low endosomal escape
efficiency.
Under this technical background, the present inventors
have identified an endosomal escape motif capable of
increasing the endosomal escape efficacy of a cytosol penetrating antibody (Cytotransmab) that penetrates cells and localizes in the cytosol (Choi et al., 2014), and have found that it is possible to develop a light-chain or heavy-chain variable region including an endosomal escape motif having an increased ability to escape from endosomes, and an antibody or an antigen-binding fragment thereof comprising the same.
In addition, the present inventors have found that a
cytosol-penetrating antibody having endosomal escape ability
can be produced by grafting this endosomal escape motif into
other kinds of light-chain or heavy-chain variable regions,
thereby completing the present disclosure.
The information disclosed in the Background Art section
is only for the enhancement of understanding of the
background of the present disclosure, and therefore may not
contain information that forms a prior art that would already
be known to a person of ordinary skill in the art.
DISCLOSURE OF INVENTION TECHNICAL PROBLEM
It is an object of the present disclosure to provide a
cytosol-penetrating antibody having endosome escape ability
or an antigen-binding fragment thereof.
Another object of the present disclosure is to provide a
nucleic acid encoding the antibody or antigen-binding
fragment thereof.
Still another object of the present disclosure is to
provide a vector comprising the above-described nucleic acid,
a cell transformed with the above-described vector, and a
method of producing the above-described antibody or antigen
binding fragment thereof.
Yet another object of the present disclosure is to
provide an antibody-drug conjugate comprising the above
described antibody or antigen-binding fragment thereof.
A further object of the present disclosure is to provide
a composition for delivering an active substance into cytosol,
comprising the above-described cytosol-penetrating antibody
or antigen-binding fragment thereof.
A still further object of the present disclosure is to
provide a method for producing the above-described cytosol
penetrating antibody or antigen-binding fragment thereof.
TECHNICAL SOLUTION
To achieve the above object, the present disclosure
provides a cytosol-penetrating antibody or an antigen-binding
fragment thereof comprising a light-chain variable region
and/or heavy-chain variable region that comprises an endosomal
escape motif in its CDR3, wherein the endosomal escape motif
comprises a sequence represented by the following formula:
X1-X2-X3-Z1 wherein each of Xl, X2 and X3 is selected from the group consisting of tryptophan (W), tyrosine (Y), histidine (H) and phenylalanine (F), wherein the endosomal escape motif comprise one or more tryptophan (W);
Z1 is selected from the group consisting of methionine
(M), isoleucine (I), leucine (L), histidine (H), aspartic
acid (D), and glutamic acid (E);
the 1st amino acid of the light-chain variable region
and/or heavy-chain variable region is aspartic acid (D) or
glutamic acid (E);
the light-chain variable region and/or heavy-chain
variable region comprising Z1 induces a change in properties
of the antibody under endosomal acidic pH conditions; and
the antibody exhibits an ability to escape from
endosomes into the cytosol through the change in properties of
the antibody.
In the cytosol-penetrating antibody or antigen-binding
fragment thereof according to the present disclosure, the
first amino acid of the light-chain variable region and/or
heavy-chain variable region may be aspartic acid (D) or
glutamic acid (E).
The present disclosure also provides a nucleic acid
encoding the above-described cytosol-penetrating antibody or
antigen-binding fragment thereof.
The present disclosure also provides a vector comprising
the above-described nucleic acid.
The present disclosure also provides a cell transformed
with the above-described vector.
The present disclosure also provides a composition for
delivering an active substance into cytosol, comprising the
above-described cytosol-penetrating antibody or antigen
binding fragment thereof.
The present disclosure also provides a method for
producing the above-described cytosol-penetrating antibody or
antigen-binding fragment thereof, the method comprising a step
of grafting the endosomal escape motif X1-X2-X3-Z1 (wherein
X1-X2-X3 is selected from the group consisting of tryptophan
(W), tyrosine (Y), histidine (H), and phenylalanine (F)) into
the CDR3 of a light-chain and/or heavy-chain variable region.
ADVANTAGEOUS EFFECTS
The cytosol-penetrating antibody or antigen-binding
fragment thereof comprising the light-chain variable region
and/or heavy-chain variable region comprising the endosomal
escape motif according to the present disclosure penetrates
living cells and localizes in the cytosol, and ultimately the
antibody or antigen-binding fragment thereof can be penetrate
living cells and localize in the cytosol without having to use
a special external protein delivery system.
The cytosol-penetrating antibody or antigen-binding
fragment thereof according to the present disclosure is a
cytosol-penetrating antibody or antigen-binding fragment
thereof comprising a light-chain variable region or a heavy
chain variable region that easily interacts with and binds to
various human light-chain variable regions or heavy-chain
variable regions (VHs), and has the ability to escape from
endosomes into the cytosol. The antibody or antigen-binding
fragment thereof can penetrate cells and localize in the
cytosol, and does not show non-specific cytotoxicity for
target cells.
Based on the endosomal escape mechanism for the high
efficiency cytosol-penetrating antibody or an antigen-binding
fragment thereof according to the present disclosure, a design
of antibody libraries for improving the endosomal escape
ability and mutants can be performed.
The endosomal escape motif included in the cytosol
penetrating antibody or antigen-binding fragment thereof
according to the present disclosure is introduced into other
antibodies so that it can be expected to impart the endosomal
escape ability.
In addition, the cytosol-penetrating antibody or
antigen-binding fragment thereof according to the present
disclosure can be utilized as a carrier that delivers an
active substance into the cytosol of a living cell, and can also be utilized as a pharmaceutical composition for treatment and prevention of diseases.
Throughout this specification the word "comprise", or
variations such as "comprises" or "comprising", will be
understood to imply the inclusion of a stated element, integer
or step, or group of elements, integers or steps, but not the
exclusion of any other element, integer or step, or group of
elements, integers or steps.
Any discussion of documents, acts, materials, devices,
articles or the like which has been included in the present
specification is not to be taken as an admission that any or
all of these matters form part of the prior art base or were
common general knowledge in the field relevant to the present
disclosure as it existed before the priority date of each of
the appended claims.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows of a pulse-chase experiment and confocal
microscopy observation performed to observe the transport
- 11A- process and stability of the cytosol-penetrating antibody
(cytotransmab) TMab4 or cell-penetrating peptide TAT
introduced into cells.
FIG. 2a shows the results of confocal microscopy
observation of the cytosol-penetrating ability of the
cytosol-penetrating antibody TMab4 or the cell-penetrating
peptide TAT in the presence or absence of an inhibitor
thereof.
FIG. 2b is a bar graph showing the results of
quantifying the FITC (green fluorescence) fluorescence of the
confocal micrographs shown in FIG. 2a.
FIG. 2c shows the results of observing the cytosolic
localization of the cytosol-penetrating antibody TMab4 or the
cell-penetrating peptide TAT by confocal microscopy using
calcein in the presence or absence of an inhibitor thereof.
FIG. 2d is a bar graph showing the results of
quantifying the calcein fluorescence of the confocal
micrographs shown in FIG. 2c.
FIG. 3a shows the results of Western blot analysis
performed to confirm siRNA (short interfering RNA)-induced
inhibition of heparanase expression.
FIG. 3b shows the results of confocal microscopy
observation of cytosol penetrating antibody/lysosome merging
caused by inhibition of heparanase expression.
FIG. 3c shows the results of confocal microscopy
observation performed to confirm the cytosolic localization
of a cytosol-penetrating antibody, which is caused by
inhibition of heparanase expression.
FIG. 4 is a schematic view showing an overall
trafficking process ranging from cellular internalization of
a cytosol-penetrating antibody to localization of the
antibody in the cytosol.
FIG. 5 shows the results of observing a fluorescence
labeled cytosol-penetrating antibody in Ramos cells by
confocal microscopy in order to examine whether the antibody
can be introduced through the cell membrane depending on pH
or whether the antibody can induce cell membrane permeation
of other substances.
FIG. 6a shows the results of observing Ramos cells by an
optical microscope in order to examine whether a cytosol
penetrating antibody can form pores and take up trypan blue
having no membrane-permeating ability, depending on pH.
FIG. 6b is a graph quantitatively comparing the number
of cells that have taken up trypan blue.
FIG 7a shows the results of optical microscopic
observation performed to confirm whether cell membrane pores
produced by a cytosol-penetrating antibody at pH 5.5 is
temporary and reversible.
FIG. 7b is a graph quantitatively comparing the number
of cells that have taken up trypan blue uptake.
FIG. 8 shows the results of analyzing the cell membrane
binding of a cytosol-penetrating antibody and control
antibody adalimumab by flow cytometry (FACS) at varying pHs.
FIG. 9 shows the results of analyzing the cell membrane
flip-flop inducing abilities of a cytosol-penetrating
antibody and control antibody adalimumab by flow cytometry
(FACS) at varying pHs.
FIG. 10 is a schematic view showing a pore formation
model of a cytosol-penetrating antibody, expected based on
the above-described experiments.
FIG. 11 shows the results of predicting the pH-dependent
structural change of a cytosol-penetrating antibody on the
basis of the WAM modeling structure of the light-chain
variable region of the cytosol-penetrating antibody, and
shows amino acids, which are involved in the structural
change, and amino acids which are exposed by the structural
change.
FIG. 12 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by
mutants constructed by substituting the 1st amino acid
aspartic acid and 9 5 th amino acid methionine of a light-chain
variable region (VL), which induce a change in properties of a cytosol-penetrating antibody at acidic pH, with alanine, glutamic acid and leucine, respectively.
FIG. 13 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by
mutants constructed by substituting particular amino acids of
the CDR3 of the light-chain variable region (VL) of a
cytosol-penetrating antibody, which can possibly be involved
in endosomal escape, with alanine.
FIG. 14a shows the results of confocal microscopy
performed to analyze the cytosol-penetrating ability of
mutants constructed by substituting the CDR1 and CDR2 of the
light-chain variable region (VL) of a cytosol-penetrating
antibody, which bind to HSPG receptor and are involved in
cytosol-penetrating ability, with human germline sequences.
FIG. 14b shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by mutants constructed by substituting the CDR1 and CDR2
of the light-chain variable region (VL) of a cytosol
penetrating antibody, which bind to HSPG receptor and are
involved in cytosol-penetrating ability, with human germline
sequences.
FIG. 15a shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability.
FIG. 15b shows the results of confocal microscopy
performed to examine whether the cytosol-penetrating ability
of cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability is maintained.
FIG. 16 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by a
cytosol-penetrating antibody wild-type and cytosol
penetrating antibody mutants expected to have improved
endosomal escape ability.
FIG. 17a shows the results of observing the cytosolic
localization of a cytosol-penetrating antibody wild-type and
cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability, by confocal microscopy
using calcein.
FIG. 17b is a bar graph showing the results of
quantifying the calcein fluorescence of the confocal
micrographs shown in FIG. 17a.
FIG. 18 is a schematic view showing a process in which
GFP fluorescence by enhanced split-GFP complementation is
observed when a cytosol-penetrating antibody wild-type and a
mutant having improved endosomal escape ability localizes in
the cytosol.
FIG. 19 shows the results of 12% SDS-PAGE analysis under
reducing or non-reducing conditions after purification of a
GFP11-SBP2-fused cytosol-penetrating antibody wild-type and a
GFP11-SBP2-fused mutant having improved endosomal escape
ability.
FIG. 20a shows the results of confocal microscopy
performed to examine the GFP fluorescence of a GFP11-SBP2
fused cytosol-penetrating antibody wild-type and a GFP11
SBP2-fused mutant having improved endosomal escape ability by
enhanced split-GFP complementation.
FIG. 20b is a graph showing the results of quantifying
the GFP fluorescence of the confocal micrographs shown in FIG.
20a.
FIG. 21a is a graph showing the results of flow
cytometry (FACS) performed to analyze the cell membrane
binding of mutants obtained by substitution with arginine,
isoleucine and glycine, which are amino acids having
properties opposite to those of tryptophan.
FIG. 21b is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by
mutants obtained by substitution with arginine, isoleucine
and glycine, which are amino acids having properties opposite
to those of tryptophan.
FIG. 21c is a bar graph showing the results of observing
the cytosolic localization of mutants obtained by
substitution with arginine, isoleucine and glycine, which are
amino acids having properties opposite to those of tryptophan by confocal microscopy using calcein and quantifying the calcein fluorescence of the confocal micrographs.
FIG. 22a is a schematic view showing a process of
constructing an intact IgG-format anti-tubulin cytosol
penetrating antibody to be used to examine the activity of
cytosol-penetrating antibody mutants having improved
endosomal escape ability.
FIG. 22b shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of an intact IgG-format anti-tubulin cytosol-penetrating
antibody.
FIG. 22c shows the results of confocal microscopy
performed to examine whether an intact IgG-format anti
tubulin cytosol-penetrating antibody would merge with
cytoskeletal tubulin localized in the cytosol.
FIG. 23a is a schematic view showing a process of
constructing an intact IgG-format RAS-targeting cytosol
penetrating antibody to be used to examine the activity of
mutants having improved endosomal escape ability.
FIG. 23b shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of intact IgG-format RAS-targeting cytosol-penetrating
antibodies.
FIG. 23c shows the results of enzyme linked
immunosorbent assay performed to measure the affinities of antibodies for GppNHp-bound K-RAS G12D and GDP-bound K-RAS
G12D, which are K-RAS mutants.
FIG. 24 shows the results of confocal microscopy
observation performed to examine whether intact IgG-format
RAS-targeting cytosol-penetrating antibodies would merge with
intracellular H-RAS G12V mutants.
FIG. 25a is a graph showing the results of
quantitatively comparing the number of cells that have taken
up trypan blue depending on pH by mutants constructed by
substituting the 1st amino acid aspartic acid of the light
chain variable region (VL) of a cytosol-penetrating antibody,
which induce a change in properties of the cytosol
penetrating antibody at acidic pH 5.5, with various amino
acids.
FIG. 25b is a graph showing the results of
quantitatively comparing the number of cells that have taken
up trypan blue depending on pH by mutants constructed by
substituting 9 5 th amino acid methionine of the light-chain
variable region (VL) of a cytosol-penetrating antibody, which
induce a change in properties of the cytosol-penetrating
antibody at acidic pH 5.5, with various amino acids.
FIG. 26a shows a graph showing quantitatively comparing
the number of cells that have taken up trypan blue depending
on pH by mutants designed for the purpose of inducing an
additional change in properties in response to pH.
FIG. 26b shows a bar graph showing the results of
observing the cytosolic localization of mutants designed for
the purpose of inducing an additional change in properties in
response to pH by confocal microscopy using calcein and
quantifying the calcein fluorescence of the confocal
micrographs.
FIG. 27 is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
obtained by changing the amino acid number of the CDR3 of the
light-chain variable region of a cytosol-penetrating antibody.
FIG. 28a shows a process of constructing an intact IgG
format RAS-targeting cytosol-penetrating antibody in which an
improved endosomal escape motif is introduced into the light
chain variable region of a conventional therapeutic antibody.
FIG. 28b shows the results of fluorescence microscopic
observation performed to examine whether the HSPG binding
affinity and cytosol-penetrating ability of an intact IgG
format RAS-targeting cytosol-penetrating antibody in which an
improved endosomal escape motif is introduced into the light
chain variable region of a conventional therapeutic antibody
would be reduced or eliminated.
FIG. 28c shows a graph quantitatively comparing the
number of cells that taken up trypan blue at acidic pH by an
intact IgG-format RAS-targeting cytosol-penetrating antibody
in which an improved endosomal escape motif is introduced into the light-chain variable region of a conventional therapeutic antibody.
FIG. 29a shows the results of ELISA performed to measure
the affinities of an intact IgG-format RAS-targeting cytosol
penetrating antibody, in which an improved endosomal escape
motif is introduced into the light-chain variable region of a
conventional therapeutic antibody, for GppNHp-bound K-RAS
G12D and GDP-bound K-RAS G12D, which are K-RAS mutants.
FIG. 29b shows a schematic view showing a process of
constructing an intact IgG-format RAS-targeting cytosol
penetrating antibody in which an improved endosomal escape
motif is introduced into the RGD10 peptide-fused light-chain
variable region of a conventional therapeutic antibody.
FIG. 29c shows the results of confocal microscopy
performed to examine whether an intact IgG-format RAS
targeting cytosol-penetrating antibody in which an improved
endosomal escape motif is introduced into the RGD10 peptide
fused light-chain variable region of a conventional
therapeutic antibody would merge with intracellular activated
H-RAS G12V mutants.
FIG. 30a shows a process of constructing a cytosol
penetrating antibody having a light-chain variable region
from which endosomal escape ability has been removed and a
heavy-chain variable region into which an improved endosomal
escape motif has been introduced.
FIG. 30b shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by a cytosol-penetrating antibody having a light-chain
variable region from which endosomal escape ability is
removed and a heavy-chain variable region into which an
improved endosomal escape motif is introduced.
FIG. 30c shows the results of confocal microscopy
performed to observe the GFP fluorescence by enhanced split
GFP complementation of a GFP11-SBP2-fused cytosol-penetrating
antibody having a light-chain variable region from which
endosomal escape ability has been removed, and a heavy-chain
variable region into which an improved endosomal escape motif
has been introduced.
FIG. 30d shows the results of confocal microscopy
performed using calcein in order to observe the cytosolic
localization of a cytosol-penetrating antibody having a
light-chain variable region from which endosomal escape
ability has been removed and a heavy-chain variable region
into which an improved endosomal escape motif has been
introduced.
FIG. 31a is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
constructed by substituting the 1 't amino acid glutamic acid
of the heavy-chain variable region (VH) of a cytosol penetrating antibody, which induces a change in properties of the antibody at acidic pH 5.5, with various amino acids.
FIG. 31b is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
constructed by substituting 1 0 2 "d amino acid leucine of the
heavy-chain variable region (VH) of a cytosol-penetrating
antibody, which induces a change in properties of the
antibody at acidic pH 5.5, with various amino acids.
FIG. 32a shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by intact IgG-format cytosol-penetrating antibodies having
a light-chain variable region and/or a heavy-chain variable
region introduced with an endosomal escape motif having three
tryptophan residues.
FIG. 32b shows a bar graph showing the results of
observing the cytosolic localization of intact IgG-format
cytosol-penetrating antibodies having a light-chain variable
region and/or a heavy-chain variable region introduced with
an endosomal escape motif having three tryptophan residues by
confocal microscopy using calcein and quantifying the calcein
fluorescence of the confocal micrographs.
FIG. 33a shows a schematic view showing a process of
constructing an intact IgG-format cytosol-penetrating
antibody in which an improved endosomal escape motif has been
introduced into a heavy-chain variable region thereof and an improved endosomal escape motif has been introduced into a light-chain variable region of a conventional therapeutic antibody fused with an EpCAM-targeting peptide.
FIG. 33b shows a bar graph showing the results of
observing the cytosolic localization of an intact IgG-format
cytosol-penetrating antibody, in which an improved endosomal
escape motif has been introduced into a heavy-chain variable
region thereof and an improved endosomal escape motif has
been introduced into a light-chain variable region of a
conventional therapeutic antibody fused with an EpCAM
targeting peptide, by confocal microscopy using calcein and
quantifying the calcein fluorescence of the confocal
micrographs.
FIG. 33c shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by an intact IgG-format cytosol-penetrating antibody in
which an improved endosomal escape motif has been introduced
into a heavy-chain variable region thereof and an improved
endosomal escape motif has been introduced into a light-chain
variable region of a conventional therapeutic antibody fused
with an EpCAM-targeting peptide.
FIG. 34a is a schematic view showing a process of
constructing an intact IgG-format cytosol-penetrating
antibody in which an improved endosomal escape motif has been introduced into the heavy-chain variable region of a conventional therapeutic antibody.
FIG. 34b is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by an
intact IgG-format cytosol-penetrating antibody in which an
improved endosomal escape motif has been introduced into the
heavy-chain variable region of a conventional therapeutic
antibody.
FIG. 35 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by an
intact IgG-format cytosol-penetrating antibody comprising a
light-chain variable region and/or a heavy-chain variable
region introduced with aspartic acid.
FIG. 36a shows the results of observing a crystal of CT
59 Fab, formed under Index G1 conditions, by RI1000 (Rock
Imager1000; automatic protein crystal image analysis system).
FIG. 36b shows the three-dimensional structure of CT-59
refined and validated using the pymol program. The 1st amino
acid aspartic acid (D) and 9 5 th amino acid methionine (M) are
shown in yellow, and the 9 2 nd to 94th amino acids are shown in
orange.
BEST MODE FOR CARRYING OUT THE INVENTION
Unless defined otherwise, all the technical and
scientific terms used herein have the same meaning as those
generally understood by one of ordinary skill in the art to which the invention pertains. Generally, the nomenclature used herein and the experiment methods, which will be described below, are those well known and commonly employed in the art.
In one aspect, the present disclosure is directed to a
cytosol-penetrating antibody or an antigen-binding fragment
thereof comprising a light-chain variable region and/or
heavy-chain variable region that comprises a sequence
represented by the following formula in its CDR3:
X1-X2-X3-Z1
wherein X1-X2-X3 is an endosomal escape motif, and each
of Xl, X2 and X3 is selected from the group consisting of
tryptophan (W), tyrosine (Y), histidine (H) and phenylalanine
(F);
Z1 is selected from the group consisting of methionine
(M), isoleucine (I), leucine (L), histidine (H), aspartic
acid (D), and glutamic acid (E);
the light-chain variable region and/or heavy-chain
variable region comprising Z1 induces a change in properties
of the antibody under endosomal acidic pH conditions; and
the antibody exhibits an ability to escape from
endosomes into the cytosol through the change in properties
of the antibody.
"Endosomal escape" in the present disclosure may mean
actively penetrating living cells by endocytosis, and then escaping from endosomes into the cytosol under acidic conditions.
"Endosomal escape motif" in the present disclosure
includes a one-dimensional structure comprising a specific
amino acid sequence having the property of inducing endosomal
escape under acidic conditions, and a three-dimensional
structure formed thereby. "Endosomal escape motif" may be
used interchangeably with "motif having endosomal escape
ability". An antibody comprising a light-chain variable
region (VL) or heavy-chain variable region (VH) that
comprises an "endosomal escape motif" is capable of
penetratingg the cytosol". "Cytosol-penetrating antibody"
means that an antibody that penetrated cells by endocytosis
escapes from endosomes into the cytosol under acidic
conditions. "Cytosol-penetrating antibody" may be used
interchangeably with "antibody having cytosol-penetrating
ability".
In the present disclosure, Z1 included in the endosomal
escape motif X1-X2-X3-Z1 may be located at the 9 5 th amino acid
of the light-chain variable region or the 102nd amino acid of
the heavy-chain variable region, as numbered by the Kabat
numbering system, and is the hydrophobic amino acid
methionine (M), isoleucine (I) or leucine (L), the negatively
charged amino acid aspartic acid (D) or glutamic acid (E), or
the positively charged amino acid histidine (H) . The 1st amino acid of the light-chain variable region or heavy-chain variable region of the cytosol-penetrating antibody according to the present disclosure can interact with negatively charged aspartic acid (D) or glutamic acid (E) and Z1, which is the 9 5 th amino acid of the light-chain variable region or the 1 0 2 nd amino acid of the heavy-chain variable region, under endosomal acidic pH conditions, thereby inducing a change in the properties of the antibody and allowing the antibody to have the ability to escape from endosomes into the cytosol.
In the present disclosure, the 1st amino acid of the
light-chain variable region and/or heavy-chain variable
region of the cytosol-penetrating antibody of the cytosol
penetrating antibody or antigen-binding fragment thereof may
interact with Z1 under endosomal acidic pH conditions to
induce a change in properties of the cytosol-penetrating
antibody.
In addition, as pH 7.4 changes to endosomal acidic pH
5.5, the interaction between Z1 of the endosomal escape motif
and the 1st amino acid of the light-chain variable region
and/or heavy-chain variable region changes. Namely, when Z1
is composed of the hydrophobic amino acid methionine (M),
isoleucine (I) or leucine (L) or the negatively charged amino
acid aspartic acid (D) or glutamic acid (E), the carboxylic
acid in the side chain of the negatively charged amino acid
becomes hydrophobic by partial protonation under the acidic conditions, and thus Z1 hydrophobically interacts with aspartic acid (D) or glutamic acid (E) , which is the 1st amino acid of the light-chain variable region or heavy-chain variable region.
In addition, regarding induction of a pH-dependent
change in properties of the antibody by interaction between
Z1 of the endosomal escape motif and the 1st amino acid of the
light-chain variable region or heavy-chain variable region,
when Z1 is composed of the hydrophobic amino acid methionine
(M), isoleucine (I) or leucine (L), it does not interact with
the negatively charged amino acid aspartic acid (D) or
glutamic acid (E), which is the 1st amino acid of the light
chain variable region or heavy-chain variable region, under
neutral pH conditions. However, as pH decreases, the
negatively charged amino acid becomes hydrophobic by
protonation, and thus hydrophobically interacts with Z1. As a
result, the distance between the two amino acids becomes
closer, thereby inducing a change in the structure and
function of the protein. This phenomenon is known as the
Tanford transition.
In addition, when Z1 is composed of histidine (H), as pH
changes from 7.4 to 5.5, the net charge of the amino acid
side chains becomes positive, and Z1 electrostatically
interacts with aspartic acid (D) or glutamic acid (E), which is the 1st amino acid of the light-chain variable region or heavy-chain variable region.
In an example of the present disclosure, in order to
confirm whether a pH-dependent change in the properties of
the antibody is induced by a pair of the 1st and 9 5 th amino
acids of the light-chain variable region, endosomal escape
ability was analyzed using alanine substitution mutants. As a
result, the alanine substitution mutations showed no pH
dependent endosomal escape ability. In addition, endosomal
escape ability was analyzed using mutations obtained by
substituting the 9 5 th amino acid with 20 different amino acids,
and as a result, mutants in which the 95th amino acid of the
light-chain variable region of the cytosol-penetrating
antibody according to the present disclosure is composed of
methionine (M), leucine (L), isoleucine (I), aspartic acid
(D), glutamic acid (E) and histidine (H) showed pH-dependent
endosomal escape ability.
In an example of the present disclosure, regarding a
pair of the 1st and 1 0 2 th amino acids of the heavy-chain
variable region, which induces a pH-dependent change in the
properties of the antibody, which has been found through the
alanine substitution mutation experiment in the same manner
as that in the above example, endosomal escape ability was
analyzed using mutations obtained by substituting the 102th
amino acid with 13 different amino acids, and as a result, mutants in which the 102th amino acid of the heavy-chain variable region of the cytosol-penetrating antibody according to the present disclosure is composed of methionine (M), leucine (L), isoleucine (I), aspartic acid (D), glutamic acid
(E) and histidine (H) showed pH-dependent endosomal escape
ability.
In addition, in one embodiment of the present disclosure,
the cytosol-penetrating antibody may further comprise,
between X3 and Z1, an amino acid sequence represented by (al
... -an) (where n is an integer ranging from 1 to 10). In one
embodiment of the present disclosure, when the cytosol
penetrating antibody further comprises, between X3 and Z1, an
amino acid sequence represented by (al-...-an) (where n is an
integer ranging from 1 to 10), a change in the properties of
the endosomal escape motif can be promoted while the length
of the CDR3 increases.
In the present disclosure, the endosomal escape motif
has a structure of X1-X2-X3-Z1 included in the light-chain
variable region; the heavy-chain variable region; or the
light-chain variable region and heavy-chain variable region,
and each of Xl, X2 and X3 is selected from the group
consisting of tryptophan (W), tyrosine (Y), histidine (H) and
phenylalanine (F).
In the present disclosure, the endosomal escape motif
X1-X2-X3 can react at intracellular endosomal weakly acidic pH, for example, a pH of 5.5 to 6.5, which is early endosomal pH, and thus Z1 can interact with the 1 st amino acid of the light-chain variable region or heavy-chain variable region, thereby changing the properties of the antibody and significantly increasing the endosomal escape efficiency of the antibody.
In the present disclosure, the endosomal escape motif Xl,
X2 and X3 are selected from the group consisting of amino
acids that easily interact with the hydrophilic head portion
and hydrophobic tail portion of 1-palmitoyl-2-oleoyl-sn
glycero-3-phosphatidylcholine (POPC) which is the major
phospholipid component of the inner endosomal membrane.
Specifically, the average binding activity of 20
different amino acids for 1-palmitoyl-2-oleoyl-sn-glycero-3
phosphatidylcholine (POPC) is higher in the order of
tryptophan (W), phenylalanine (F), tyrosine (Y), leucine (L),
isoleucine (I), cysteine (C), and methionine (M).
Specifically, the binding activity of 20 different amino
acids for the hydrophilic head portion of 1-palmitoyl-2
oleoyl-sn-glycero-3-phosphatidylcholine (POPC) is higher in
the order of arginine (R), tryptophan (W), tyrosine (Y),
histidine (H), asparagine (N), glutamine (Q), lysine (K),
and phenylalanine (F) . In addition, the binding activity of
20 different amino acids for the hydrophobic head portion of
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC) is higher in the order of tryptophan (W), phenylalanine (F), leucine (L), methionine (M), isoleucine (I), valine (V), and tyrosine (Y).
In the present disclosure, amino acids constituting Xl,
X2 and X3 of the endosomal escape motif may include tyrosine
(Y) and histidine (H), which constitute a wild-type cytosol
penetrating antibody. Thus, these amino acids may include
tryptophan (W) and phenylalanine (F), which have a higher
average binding affinity than tyrosine (Y) for 1-palmitoyl-2
oleoyl-sn-glycero-3-phosphatidylcholine (POPC).
In an example of the present disclosure, amino acids
that easily interact with 1-palmitoyl-2-oleoyl-sn-glycero-3
phosphatidylcholine (POPC) was examined through literature
search. Furthermore, tryptophan (W) having high binding
affinity for the hydrophilic head portion and hydrophobic
tail portion was introduced into Xl, X2 and X3 of the
endosomal escape motif, and endosomal escape ability was
analyzed. As a result, an improved cytosol-penetrating
antibody according to the present disclosure showed a higher
pH-dependent endosomal escape ability than the wild-type
cytosol-penetrating antibody including tyrosine (Y), tyrosine
(Y) and histidine (H) in Xl, X2 and X3, respectively.
In another example, in order to examine whether
interaction with the head portion or tail portion of 1
palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC) is important for endosomal escape, mutants were constructed by introducing arginine (R) which easily binds only to the head portion, isoleucine (I) which easily binds only to the tail portion, and glycine (G) which shows significantly low interaction with the lipid, into Xl, X2 and X3 of the endosomal escape motif, and endosomal escape ability was analyzed. As a result, two mutants, excluding a cytosol penetrating antibody introduced with tryptophan (W) according to the present disclosure, all showed significantly reduced endosomal escape ability. This suggests that interactions with the hydrophilic head and hydrophobic tail of the lipid are all involved in endosomal escape.
In still another example, the endosomal escape motif of
the light-chain variable region may comprise one or more
tryptophans, or one or two tryptophans.
In order to increase the effect of a substance that
exhibits its activity in the cytosol, the amount of the
substance located in the cytosol should ultimately increase.
Hence, studies have been conducted to increase endosomal
escape ability. Such studies have been conducted mainly on
cell-penetrating peptides (CPPs). In particular, interaction
with the lipid membrane is essential for passage through the
cell lipid membrane, a strategy for enhancing this
interaction has been introduced. As one example, tryptophan was added to the N-terminus of a cytosol-penetrating peptide rich in arginine and to the middle portion of the peptide.
However, this approach has not been attempted on
antibodies. Tryptophan (W) is an amino acid showing high
interaction with the hydrophilic head portion and hydrophobic
tail portion of 1-palmitoyl-2-oleoyl-sn-glycero-3
phosphatidylcholine (POPC) which is the major phospholipid
component of the cell membrane. Thus, it can improve
interaction with the inner endosomal membrane and induce
endosomal escape.
Specifically, in an example of the present disclosure,
the endosomal escape motif X1-X2-X3 of the light-chain
variable region and/or heavy-chain variable region may
comprise a sequence selected from the group consisting of W
W-W, W-W-H, W-Y-W, Y-W-W, W-Y-H, and Y-W-H (where W is
tryptophan, Y is tyrosine, H is histidine).
In an example of the present disclosure, it was found
that the endosomal escape motif X1-X2-X3 of the light-chain
variable region and/or heavy-chain variable region increases
the endosomal escape ability through a change in the
properties of the antibody by induction of the interaction
under endosomal acidic pH conditions.
As used herein, the term "endosomal acidic pH" refers to
a pH range of 6.0 to 4.5, which satisfies early endosomal and
late endosomal pH conditions and in which the side-chain properties of aspartic acid (D) and glutamic acid (E) may change.
The CDR3 of the light-chain variable region comprising
the endosomal escape motif may comprise one or more sequences
selected from the following group consisting of:
QQYWWHMYT (SEQ ID NO: 8);
QQYWYWMYT (SEQ ID NO: 9);
QQYYWWMYT (SEQ ID NO: 10);
QQYWYHMYT (SEQ ID NO: 11);
QQYYWHMYT (SEQ ID NO: 12); and
QQYWWWMYT (SEQ ID NO: 51).
The light-chain variable region comprising the endosomal
escape motif may comprise a sequence having a homolog of at
least 80%, for example, 85%, 90%, 95%, 96%, 97%, 98%, 99% or
100%, to a light-chain variable region sequence selected from
the group consisting of, for example, SEQ ID NOS: 1 to 5, 13
to 23, 25 to 37, 50, and 60 to 64.
Improved endosomal escape efficiency can also be
achieved at the same level even when the endosomal escape
motif is included in the heavy-chain variable region.
Specifically, the heavy-chain variable region may include Xl
X2-X3-Z1 (wherein each of Xl, X2 and X3 is selected from the
group consisting of tryptophan (W), tyrosine (Y), histidine
(H) and phenylalanine (F)) in its CDR3, and Z1 can interact
with the 1st amino acid of the heavy-chain variable region under endosomal acidic pH conditions, thus changing the properties of the cytosol-penetrating antibody and enabling the antibody to have the ability to escape from endosomes into the cytosol.
The CDR3 of the heavy-chain variable region comprising
the endosomal escape motif may comprise one or more sequences
selected from the following group consisting of SEQ ID NOS: 46
to 49, and 53:
GWYWMDL (SEQ ID NO: 46);
GWYWFDL (SEQ ID NO: 47);
GWYWGFDL (SEQ ID NO: 48);
YWYWMDL (SEQ ID NO: 49); and
GWWWMDL (SEQ ID NO: 53).
the light-chain variable region comprise a sequence
having a homolog of at least 80% to a light-chain variable
region sequence selected from the group consisting of SEQ ID
NOS: 1 to 5, 13 to 23, 25 to 37, 50, and 60 to 64.
The heavy-chain variable region comprising the endosomal
escape motif may comprise a sequence having a homolog of at
least 80%, for example, 85%, 90%, 95%, 96%, 97%, 98%, 99% or
100%, to a heavy-chain variable region sequence selected from
the group consisting of, for example, SEQ ID NOS: 39 to 42,
52, and 54 to 59.
In addition, in one embodiment, the sequence may further
comprise Z2 linked to Xl, and thus may be represented by the
following formula:
Z2-X1-X2-X3-Z1,
wherein Z2 is selected from the group consisting of
glutamine (Q), leucine (L) histidine (H).
As described above, the sequence is represented by Z2
X1-X2-X3-Z1, the 1st amino acid of the light-chain variable
region and/or heavy-chain variable region interacts with Z1
and/or Z2 to induce pH-dependent endosomal escape under
endosomal acidic pH conditions.
The CDR3 of the light-chain variable region comprising
the endosomal escape motif may comprise a sequences of SEQ ID
NO: 24 as set forth below:
QHYWYWMYT (SEQ ID NO: 24).
As used herein, "antibody" is meant to include an intact
antibody form that specifically binds to a target as well as
an antigen-binding fragment of the antibody.
The complete antibody is a structure having two full
length light chains and two full-length heavy chains, and
each light chain is linked by a disulfide bond with a heavy
chain. A constant region of the heavy chain has gamma (y), mu
(p), alpha (a), delta (5), and epsilon (E) types. Sub-classes
have gamma 1 (yl) , gamma 2 (y 2 ) , gamma 3 (y 3 ) , gamma 4 (y4) ,
alpha
1 (al), and alpha 2 (a2) types. A constant region of the light
chain has kappa (K) and lambda (X) types.
An antigen binding fragment or an antibody fragment of
an antibody refers to a fragment having an antigen binding
function and includes Fab, F(ab'), F(ab')2, Fv, and the like.
Fab of the antibody fragments has a structure including
variable regions of a light chain and a heavy chain, a
constant region of the light chain, and a first constant
region (CH1 domain) of the heavy chain with one antigen
binding site. Fab' differs from Fab in that it has a hinge
region containing one or more cysteine residues at the C
terminal of the heavy chain CH1 domain. The F(ab')2 antibody
is produced when the cysteine residue of the hinge region of
the Fab' forms a disulfide bond. Recombinant techniques for
generating Fv fragments with minimal antibody fragments
having only a heavy-chain variable region and a light-chain
variable region are described in PCT International
Publication Nos. W088/001649, W088/006630, W088/07085,
W088/07086, and W088/09344. A two-chain Fv has a non-covalent
bonding between a heavy-chain variable region and a light
chain variable region. A single chain Fv (scFv) is connected
to a heavy-chain variable region and a light-chain variable
region via a peptide linker by a covalent bond or directly at
the C-terminal. Thus, the single chain Fv (scFv) has a
structure such as a dimer like the two-chain Fv. Such an antibody fragment can be obtained using a protein hydrolyzing enzyme (for example, when the whole antibody is cleaved with papain, Fab can be obtained, and when whole antibody is cut with pepsin, F(ab')2 fragment can be obtained), and it can also be produced through gene recombinant technology.
In one embodiment, the antibody according to the present
disclosure may be an Fv form (e.g., scFv) or a whole antibody
form. The cytosol-penetrating antibody according to the
present disclosure may be an IgG, IgM, IgA, IgD or IgE type.
For example, it may be an IgG1, IgG2, IgG3, IgG4, IgM, IgE,
IgAl, IgA5, or IgD type. Most preferably, it may be an
intact IgG-format monoclonal antibody.
Further, the heavy chain constant region can be selected
from any one isotype of gamma (y), mu (p), alpha (a), delta
(5), and epsilon (s). Sub-classes have gamma 1 (yl), gamma 2
(y2), gamma 3 (y3), gamma 4 (y4), alpha 1 (al), and alpha 2
(a2) types. A constant region of the light chain has kappa
(K) and lambda (X) types.
The term "heavy chain" as used herein refers to a full
length heavy chain and fragments thereof including a variable
region domain VH including an amino acid sequence with
sufficient variable region sequence to confer specificity to
an antigen and three constant region domains CH1, CH2, and
CH3. The term "light chain" as used herein refers to a full
length heavy chain and fragments thereof including a variable region domain VL including an amino acid sequence with sufficient variable region sequence to confer specificity to an antigen and a constant region domain CL.
In the present disclosure, the antibody includes
monoclonal antibodies, multispecific antibodies, human
antibodies, humanized antibodies, chimeric antibodies,
single-chain Fvs (scFV), single chain antibodies, Fab
fragments, F(ab') fragments, disulfide-linked Fvs (sdFV) and
anti-idiotype (anti-Id) antibodies, and epitope-binding
fragments of these antibodies, but is not limited thereto.
An "Fv" fragment is an antibody fragment that contains
complete antigen recognition and binding sites. Such region
includes a heavy chain variable domain and a light chain
variable domain, for example, dimers substantially tightly
covalently associated with scFv.
"Fab" fragment contains the variable and constant domain
of the light-chain and the variable and first constant domain
(CH1) of the heavy chain. F(ab')2 antibody fragment generally
includes a pair of Fab fragments covalently linked by hinge
cysteine near their carboxy-terminus.
"Single chain Fv" or "scFv" antibody fragment comprises
VH and VL domains of the antibody. Such domains are within a
single polypeptide chain. The Fv polypeptide may further
include a polypeptide linker between the VH domain and the VL domain such that the scFv can form the desired structure for antigen binding.
The monoclonal antibody refers to an antibody obtained
from a substantially homogeneous population of antibodies,
i.e., the same except for possible naturally occurring
mutations that may be present in trace amounts of individual
antibodies that occupy the population. The monoclonal
antibody is highly specific and is derived against a single
antigenic site.
The non-human (e.g. murine) antibody of the "humanized"
form is a chimeric antibody containing minimal sequence
derived from non-human immunoglobulin. In most cases, the
humanized antibody is a human immunoglobulin (receptor
antibody) that has been replaced by a residue from the
hypervariable region of a non-human species (donor antibody),
such as a mouse, rat, rabbit, and non-human primate, having
specificity, affinity, and ability to retain a residue from
the hypervariable region of the receptor.
"Human antibody" is a molecule derived from human
immunoglobulin and means that all of the amino acid sequences
constituting the antibody including the complementarity
determining region and the structural region are composed of
human immunoglobulin.
A heavy chain and/or light chain is partly identical or
homologous to the corresponding sequence in an antibody derived from a particular species or belonging to a particular antibody class or subclass, while the remaining chain(s) are identical or homologous to corresponding sequences in an antibody derived from another species or belonging to another antibody class or subclass "chimeric" antibodies (immunoglobulins) as well as a fragment of such antibody exhibiting the desired biological activity.
"Antibody variable domain" as used herein refers to the
light and heavy chain regions of an antibody molecule
including the amino acid sequences of a complementarity
determining region (CDR; i.e., CDR1, CDR2, and CDR3) and a
framework region (FR). VH refers to a variable domain of the
heavy chain. VL refers to a variable domain of the light
chain.
"Complementarity determining region" (CDR; i.e., CDR1,
CDR2, and CDR3) refers to the amino acid residue of the
antibody variable domain, which is necessary for antigen
binding. Each variable domain typically has three CDR regions
identified as CDR1, CDR2, and CDR3.
"Framework region" (FR) is a variable domain residue
other than a CDR residue. Each variable domain typically has
four FRs identified as FR1, FR2, FR3, and FR4.
In another aspect, the present disclosure is directed to
a composition for delivering an active substance into cytosol, comprising the cytosol-penetrating antibody or antigen binding fragment thereof.
The active substance may be a type fused or bonded to
the antibody, and the active substance may be one or more
selected from the group consisting of, for example, peptides,
proteins, toxins, antibodies, antibody fragments, RNAs,
siRNAs, DNAs, small molecule drugs, nanoparticles, and
liposomes, but is not limited thereto.
The proteins may be antibodies, antibody fragments,
immuoglubulin, peptides, enzymes, growth factors, cytokines,
transcription factors, toxins, antigen peptides, hormones,
carrier proteins, motor function proteins, receptors,
signaling proteins, storage proteins, membrane proteins,
transmembrane proteins, internal proteins, external proteins,
secretory proteins, viral proteins, glycoproteins, cleaved
proteins, protein complexes, chemically modified proteins, or
the like.
The RNA or ribonucleic acid is based on ribose, a kind
of pentose, is a kind of nucleic acid consisting of a chain
of nucleotides, has a single-stranded structure, and is
formed by transcription of a portion of DNA. In one
embodiment, the RNA may be selected from the group consisting
of rRNA, mRNA, tRNA, miRNA, snRNA, snoRNA, and aRNA, but is
not limited thereto.
The siRNA (Small interfering RNA) is a small RNA
interference molecule composed of dsRNA, and functions to
bind to and degrade an mRNA having a target sequence. It is
used as a disease treating agent or has an activity of
inhibiting expression of a protein translated from a target
mRNA by degrading the target mRNA. Due to this activity, it
is widely used herein.
The DNA or deoxyribonucleic acid is a kind of nucleic
acid, is composed of a backbone chain comprising
monosaccharide deoxyribose linked by phosphate, together with
two types of nucleobases (purines and pyrimidines), and
stores the genetic information of cells.
As used herein, the term "small-molecule drugs" refers
to organic compounds, inorganic compounds or organometallic
compounds that have a molecular weight of less than about
1000 Da and are active as therapeutic agents against diseases.
The term is used in a broad sense herein. The small-molecule
drugs herein encompass oligopeptides and other biomolecules
having a molecular weight of less than about 1000 Da.
In the present disclosure, a nanoparticle refers to a
particle including substances ranging between 1 and 1,000 nm
in diameter. The nanoparticle may be a metal nanoparticle, a
metal/metal core shell complex consisting of a metal
nanoparticle core and a metal shell enclosing the core, a
metal/non-metal core shell consisting of a metal nanoparticle core and a non-metal shell enclosing the core, or a non metal/metal core shell complex consisting of a non-metal nanoparticle core and a metal shell enclosing the core.
According to an embodiment, the metal may be selected from
gold, silver, copper, aluminum, nickel, palladium, platinum,
magnetic iron and oxides thereof, but is not limited thereto,
and the non-metal may be selected from silica, polystyrene,
latex and acrylate type substances, but is not limited
thereto.
In the present disclosure, liposomes include at least
one lipid bilayer enclosing the inner aqueous compartment,
which is capable of being associated by itself. Liposomes may
be characterized by membrane type and size thereof. Small
unilamellar vesicles (SUVs) may have a single membrane and
may range between 20 and 50 nm in diameter. Large unilamellar
vesicles (LUVs) may be at least 50 nm in diameter.
Oliglamellar large vesicles and multilamellar large vesicles
may have multiple, usually concentric, membrane layers and
may be at least 100 nm in diameter. Liposomes with several
nonconcentric membranes, i.e., several small vesicles
contained within a larger vesicle, are referred to as
multivesicular vesicles.
The term "fusion" or "binding" refers to unifying two
molecules having the same or different function or structure,
and the methods of fusing may include any physical, chemical or biological method capable of binding the tumor tissue penetrating peptide to the protein, small-molecule drug, nanoparticle or liposome. Preferably, the fusion may be made by a linker peptide, and for example, the linker peptide may mediate the fusion with the bioactive molecules at various locations of an antibody light-chain variable region of the present disclosure, an antibody, or fragments thereof.
In still another aspect, the present disclosure provides
a pharmaceutical composition for prevention or treatment of
cancer, comprising: the above-described cytosol-penetrating
antibody or antigen binding fragment thereof; and an active
substance to be delivered into cytosol by the cytosol
penetrating antibody or antigen binding fragment thereof.
The use of the active substance can impart the property
of penetrating cells and localizing in the cytosol, without
affecting the high specificity and affinity of antibodies for
antigens, and thus can localize in the cytosol which is
currently classified as a target in disease treatment based
on small-molecule drugs, and at the same time, can exhibit
high effects on the treatment and diagnosis of tumor and
disease-related factors that show structurally complex
interactions through a wide and flat surface between protein
and protein.
The use of the pharmaceutical composition for prevention
or treatment of cancer can impart the property of enabling the antibody to penetrate cells and remain in the cytosol, without affecting the high specificity and affinity of the antibody for antigens, and thus the antibody can localize in the cytosol which is currently classified as a target in disease treatment based on small-molecule drugs, and at the same time, can be expected to exhibit high effects on the treatment and diagnosis of tumor and disease-related factors that show structurally complex interactions through a wide and flat surface between protein and protein.
In one example of the present disclosure, the
pharmaceutical composition can selectively inhibit KRas
mutants, which are major drug resistance-associated factors
in the use of various conventional tumor therapeutic agents,
and at the same time, can be used in combination with
conventional therapeutic agents to thereby exhibit effective
anticancer activity.
The cancer may be selected from the group consisting of
squamous cell carcinoma, small cell lung cancer, non-small
cell lung cancer, adenocarcinoma of lung, squamous cell
carcinoma of lung, peritoneal cancer, skin cancer, skin or
ocular melanoma, rectal cancer, anal cancer, esophageal
cancer, small intestine cancer, endocrine cancer, parathyroid
cancer, adrenal cancer, soft tissue sarcoma, urethral cancer,
chronic or acute leukemia, lymphoma, hepatoma,
gastrointestinal cancer, pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer, bladder cancer, liver tumor, breast cancer, colon cancer, colorectal cancer, endometrial cancer or uterine cancer, salivary gland cancer, kidney cancer, liver cancer, prostate cancer, vulva cancer, thyroid cancer, liver cancer and head and neck cancer.
When the composition is prepared as a pharmaceutical
composition for preventing or treating cancer or
angiogenesis-related diseases, the composition may include a
pharmaceutically acceptable carrier. The pharmaceutically
acceptable carrier contained in the composition is typically
used in the formulation. Examples of the pharmaceutically
acceptable carrier included in the composition may include,
but are not limited to, lactose, dextrose, sucrose, sorbitol,
mannitol, starch, acacia rubber, calcium phosphate, alginate,
gelatin, calcium silicate, minute crystalline cellulose,
polyvinyl pyrrolidone, cellulose, water, syrup, methyl
cellulose, methyl hydroxy benzoate, propyl hydroxy benzoate,
talc, magnesium stearate and mineral oil, etc., but are not
limited thereto. In addition to the above ingredients, the
pharmaceutical composition may further include a lubricant, a
wetting agent, a sweetener, a flavoring agent, an emulsifier,
a suspension, a preservative, etc.
The pharmaceutical composition for preventing or
treating cancer or angiogenesis-related diseases may be
administered orally or parenterally. Such a parenteral administration includes intravenous injection, subcutaneous injection, intramuscular injection, intraperitoneal injection, endothelial administration, topical administration, nasal administration, intrapulmonary administration, intrarectal administration, etc. Because a protein or peptide is digested when administered orally, it is preferred that a composition for oral administration is formulated to coat an active substance or to be protected against degradation in stomach.
Also, the pharmaceutical composition may be administered by
any device which can transport active substances to target
cells.
Proper dose of the pharmaceutical composition for
preventing or treating cancer or angiogenesis-related
diseases may vary according to various factors such as method
for formulating, administration method, age, weight, gender,
pathological state of patient, food, administration time,
administration route, excretion rate and reaction sensitivity,
etc. Preferably, a proper dose of the composition is within
the range of 0.001 and 100 mg/kg based on an adult. The term
"pharmaceutically effective dose" as used herein refers to an
amount sufficient to prevent or treat cancer or angiogenesis
related diseases.
The composition may be formulated with pharmaceutically
acceptable carriers and/or excipients according to a method
that can be easily carried out by those skilled in the art, and may be provided in a unit-dose form or enclosed in a multiple-dose vial. Here, the formulation of the pharmaceutical composition may be in the form of a solution, a suspension, syrup or an emulsion in oily or aqueous medium, or may be extracts, powders, granules, tablets or capsules, and may further include a dispersion agent or a stabilizer.
Also, the composition may be administered individually or in
combination with other therapeutic agents, and may be
administered sequentially or simultaneously with conventional
therapeutic agents. Meanwhile, the composition includes an
antibody or an antigen-binding fragment, and thus may be
formulated into immuno liposome. Liposome including an
antibody may be prepared according to a method well known in
the pertinent art. The immuno liposome is a lipid composition
including phosphatidylcholine, cholesterol and
polyethyleneglycol-derived phosphatidylethanolamine, and may
be prepared by reverse phase evaporation method. For example,
a Fab' fragment of antibody may be conjugated to liposome
through disulphide exchange reaction. Liposome may further
include chemical therapeutic agents such as Doxorubicin.
In yet another aspect, the present disclosure is
directed to a pharmaceutical composition for diagnosis of
cancer, comprising: the above-described cytosol-penetrating
antibody or antigen binding fragment thereof; and an active substance to be delivered into cytosol by the cytosol penetrating antibody or antigen binding fragment thereof.
The term "diagnosis" as used herein refers to
demonstrating the presence or characteristic of a
pathophysiological condition. Diagnosing in the present
disclosure refers to demonstrating the onset and progress of
cancer.
The intact immunoglobulin-format antibody and a fragment
thereof may bind to a fluorescent substance for molecular
imaging in order to diagnose cancer through images.
The fluorescent substance for molecular imaging refers
to all substances generating fluorescence. Preferably, red
or near-infrared fluorescence is emitted, and more preferably,
a fluorescence with high quantum yield is emitted. However,
the fluorescence is not limited thereto.
Preferably, the fluorescent substance for molecular
imaging is a fluorescent substance, a fluorescent protein or
other substances for imaging, which may bind to the tumor
tissue-penetrating peptide that specifically binds to the
intact immunoglobulin-format antibody and a fragment thereof,
but is not limited thereto.
Preferably, the fluorescent substance is fluorescein,
BODYPY, tetramethylrhodamine, Alexa, cyanine, allopicocyanine,
or a derivative thereof, but is not limited thereto.
Preferably, the fluorescent protein is Dronpa protein,
enhanced green fluorescence protein (EGFP), red fluorescent
protein (DsRFP), Cy5.5, which is a cyanine fluorescent
substance presenting near-infrared fluorescence, or other
fluorescent proteins, but is not limited thereto.
Preferably, other substances for imaging are ferric
oxide, radioactive isotope, etc., but are not limited thereto,
and they may be applied to imaging equipment such as MR, PET.
In a further another aspect, the present disclosure is
directed to a nucleic acid encoding the above-described
antibody or antigen-binding fragment thereof.
The nucleic acid is a polynucleotide, and the term
"polynucleotide" as used herein refers to a
deoxyribonucleotide or ribonucleotide polymer present in a
single-stranded or double-stranded form. It includes RNA
genome sequence, DNA (gDNA and cDNA), and RNA sequence
transcribed therefrom. Unless otherwise described, it also
includes an analog of the natural polynucleotide.
The polynucleotide includes not only a nucleotide
sequence encoding the above-described light-chain variable
region (VL) and heavy-chain variable region (VH) having
improved endosomal escape ability, but also a complementary
sequence thereto. The complementary sequence includes a
sequence fully complementary to the nucleotide sequence and a
sequence substantially complementary to the nucleotide sequence. For example, this complementary sequence may include a sequence that may be hybridized with a nucleotide sequence encoding a light-chain variable region (VL) and heavy-chain variable region (VH) having any one sequence selected from the group consisting of SEQ ID NOS: 1 to 5, 13 to 23, 25 to 37, 50, and 60 to 64, and SEQ ID NOS: 39 to 42,
52, and 54 to 59 under stringent conditions known in the
pertinent art.
The polynucleotide includes not only a nucleotide
sequence encoding the above-described light-chain region
(kds), but also a complementary sequence thereto. The
complementary sequence includes a sequence fully
complementary to the nucleotide sequence and a sequence
substantially complementary to the nucleotide sequence. For
example, this means a sequence that may be hybridized with a
nucleotide sequence encoding an amino acid sequence of any
one of SEQ ID NO:1 to SEQ ID NO: 3 under stringent conditions
known in the pertinent art.
The nucleic acid may be modified. The modification
includes the addition, deletion, or non-conservative
substitution or conservative substitution of nucleotides. The
nucleic acid encoding the amino acid sequence is interpreted
to include a nucleotide sequence that has a substantial
identity to the nucleotide sequence. The substantial identity
may refer to a sequence having a homology of at least 80%, a homology of at least 90%, or a homology of at least 95% when aligning the nucleotide sequence to correspond to any other sequence as much as possible and analyzing the aligned sequence using an algorithm generally used in the pertinent art.
The DNA encoding the antibody can be easily separated or
synthesized using conventional procedures (for example, using
an oligonucleotide probe capable of specifically binding to
DNA encoding the heavy chain and the light chain of the
antibody).
In a still further aspect, the present disclosure is
directed to a method for producing the above-described
cytosol-penetrating antibody or antigen binding fragment
thereof, comprising a step of grafting the endosomal escape
motif X1-X2-X3-Z1 (wherein X1-X2-X3 is selected from the
group consisting of tryptophan (W), tyrosine (Y), histidine
(H), and phenylalanine (F)) into the CDR3 of a light chain
and/or heavy-chain variable region.
The present disclosure can provide an antibody or
antigen-binding fragment thereof having a cytosol-penetrating
ability by substituting the light-chain variable region (VL)
of a conventional antibody with a light-chain variable region
(VL) having improved endosomal escape ability and
substituting the heavy-chain variable region (VH) of the conventional antibody with a heavy-chain variable region (VH) having improved endosomal escape ability.
In one embodiment, a method of producing an intact
immunoglobulin-format antibody, which penetrates cells and
localizes in the cytosol, by use of a cytosol-penetrating
light-chain variable region (VL) having improved endosomal
escape ability and a cytosol-penetrating heavy-chain variable
region having endosomal escape ability, comprises the steps
of: obtaining a nucleic acid, in which a light-chain variable
region (VL) in a light chain comprising the light-chain
variable region (VL) and a light chain constant region is
substituted with a light-chain variable region (VL) having
endosomal escape ability or a heavy-chain variable region
(VH) and a heavy chain constant region (CH) are substituted
with a heavy-chain variable region (VH) having endosomal
escape ability, cloning the nucleic acid into a vector, and
transforming the vector into a host cell to express the
antibody or an antigen binding fragment thereof; and
recovering the expressed antibody or an antigen binding
fragment thereof.
The above-described method makes it possible to produce
an intact immunoglobulin-format antibody having increased
endosomal escape ability and cytosol-penetrating ability.
Furthermore, transformation with a vector expressing a heavy
chain comprising a heavy-chain variable region capable of recognizing a specific protein in cells makes it possible to express an antibody which is able to penetrate cells and localize in the cytosol to bind to the specific protein. The vector may be either a vector system that co-expresses the heavy chain and the light chain in a single vector or a vector system that expresses the heavy chain and the light chain in separate vectors. In the latter case, the two vectors may be introduced into a host cell by co transformation and targeted transformation.
In the present disclosure, the vector may be either a
vector system that co-expresses the heavy chain and the light
chain in a single vector or a vector system that expresses
the heavy chain and the light chain in separate vectors. In
the latter case, the two vectors may be introduced into a
host cell by co-transformation and targeted transformation.
The term "vector" as used herein refers to a means for
expressing a target gene in a host cell. For example, the
vector may include plasmid vector, cosmid vector,
bacteriophage vector, and virus vectors such as adenovirus
vector, retrovirus vector, and adeno-associated virus vector.
The vector that may be used as the recombinant vector may be
produced by operating plasmid (for example, pSC101, pGV1106,
pACYC177, ColEl, pKT230, pME290, pBR322, pUC8/9, pUC6, pBD9,
pHC79, pIJ61, pLAFR1, pHV14, pGEX series, pET series and
pUC19, etc.), phages (for example, Xgt4XB, X-Charon, XAzl and
M13, etc.), or virus (for example, CMV, SV40, etc.) commonly
used in the pertinent art.
The light-chain variable region, the light-chain
constant region (CL), the heavy-chain variable region (VH),
and the heavy-chain constant region (CH1-hinge-CH2-CH3) of
the present disclosure in the recombinant vector may be
operatively linked to a promoter. The term "operatively
linked" as used herein means a functional linkage between a
nucleotide expression control sequence (such as a promoter
sequence) and a second nucleotide sequence. Accordingly, the
control sequence may control the transcription and/or
translation of the second nucleotide sequence.
The recombinant vector may be generally constructed as a
vector for cloning or a vector for expression. As the vector
for expression, vectors generally used for expressing foreign
protein from plants, animals or microorganisms in the
pertinent art may be used. The recombinant vector may be
constructed by various methods known in the pertinent art.
The recombinant vector may be constructed to be a vector
that employs a prokaryotic cell or an eukaryotic cell as a
host. For example, when the vector used is an expression
vector and employs a prokaryotic cell as a host, the vector
generally includes a strong promoter which may promote
transcription (for example, pLX promoter, trp promoter, lac
promoter, tac promoter, T7 promoter, etc.), a ribosome binding site for initiation of translation, and termination sequences for transcription/translation. When the vector employs an eukaryotic cell as a host, a replication origin operating in the eukaryotic cell included in the vector may include an fl replication origin, an SV40 replication origin, a pMB1 replication origin, an adeno replication origin, an
AAV replication origin, a CMV replication origin and a BBV
replication origin, etc., but is not limited thereto. In
addition, a promoter derived from a genome of a mammal cell
(for example, a metalthionine promoter) or a promoter derived
from a virus of a mammal cell (for example, an adenovirus
anaphase promoter, a vaccinia virus 7.5K promoter, a SV40
promoter, a cytomegalo virus (CMV) promoter, or a tk promoter
of HSV) may be used, and the promoter generally has a
polyadenylated sequence as a transcription termination
sequence.
Another aspect of the present disclosure provides a host
cell transformed with the recombinant vector.
Any kind of host cell known in the pertinent art may be
used as a host cell. Examples of a prokaryotic cell include
strains belonging to the genus Bascillus such as E. coli
JM109, E. coli BL21, E. coli RR1, E. coli LE392, E. coli B, E.
coli X 1776, E. coli W3110, Bascillus subtilus and Bascillus
thuringiensis, Salmonella typhimurium, intestinal flora and
strains such as Serratia marcescens and various Pseudomonas
Spp., etc. In addition, when the vector is transformed in an
eukaryotic cell, a host cell such as yeast (Saccharomyce
cerevisiae), an insect cell, a plant cell, and an animal cell,
for example, SP2/0, CHO (Chinese hamster ovary) K1, CHO DG44,
PER.C6, W138, BHK, COS-7, 293, HepG2, Huh7, 3T3, RN, and MDCK
cell line, etc., may be used.
\Another aspect of the present disclosure may provide a
method for producing an intact immunoglobulin-format antibody
that penetrates cells and localizes in the cytosol, the
method comprising a step of culturing the above-described
host cell.
A recombinant vector may be inserted into a host cell
using an insertion method well known in the pertinent art.
For example, when a host cell is a prokaryotic cell, the
transfer may be carried out according to CaCl 2 method or an
electroporation method, etc., and when a host cell is an
eukaryotic cell, the vector may be transferred into a host
cell according to a microscope injection method, calcium
phosphate precipitation method, an electroporation method, a
liposome-mediated transformation method, and a gene
bombardment method, etc., but the transferring method is not
limited thereto. When using microorganisms such as E. coli,
etc. the productivity is higher than using animal cells.
However, although it is not suitable for production of intact
Ig form of antibodies due to glycosylation, it may be used for production of antigen binding fragments such as Fab and
Fv.
The method for selecting the transformed host cell may
be readily carried out according to a method well known in
the pertinent art using a phenotype expressed by a selected
label. For example, when the selected label is a specific
antibiotic resistance gene, the transformant may be readily
selected by culturing the transformant in a medium containing
the antibiotic.
EXAMPLES
Hereinafter, the present disclosure will be described in
further detail with reference to examples. It will be obvious
to a person having ordinary skill in the art that these
examples are illustrative purposes only and are not to be
construed to limit or change the scope of the present
disclosure.
Example 1: Expression and Purification of Cytosol
Penetrating Antibody (Cytotransmab)
In order to elucidate the endosomal escape mechanism of
a cytosol-penetrating antibody and to improve the endosomal
escape mechanism, the cytosol-penetrating antibody was
purified.
Specifically, in order to construct a heavy-chain
expression vector for producing an intact IgG-format monoclonal antibody, a DNA encoding a heavy chain comprising an antibody heavy-chain variable region (humanized hTO VH;
SEQ ID NO: 38) and a heavy-chain constant region (CH1-hinge
CH2-CH3), which has a secretion signal peptide-encoding DNA
fused to the 5' end, was cloned into a pcDNA3.4 vector
(Invitrogen) by NotI/HindIII.
Furthermore, in order to construct a vector that
expresses a light chain, a DNA encoding a light chain
comprising a cytosol-penetrating light-chain variable region
(hT4 VL; SEQ ID NO: 65) and light-chain constant region (CL),
which has a secretion signal peptide-encoding DNA fused to
the 5' end, was cloned into a pcDNA3.4 vector (Invitrogen) by
use of NotI/HindIII.
The light-chain and heavy-chain expression vectors were
transiently transfected, and the proteins were expressed and
purified. In a shaking flask, HEK293-F cells suspension
growing in serum-free FreeStyle 293 expression medium
(Invitrogen) were transfected with a mixture of plasmid and
polyethylenimine (PEI) (Polyscience). After 200 mL
transfection in a shaking flask (Corning), HEK293-F cells
were seeded into 100 ml of medium at a density of 2.0 x
106 cells/ml, and cultured at 150 rpm and in 8% C0 2 . To
produce each monoclonal antibody, a suitable heavy-chain and
light-chain plasmid were diluted in 10 ml of FreeStyle 293
expression medium (Invitrogen) (125 pg heavy chain, 125 pg light chain, a total of 250 pg (2.5 pg/ml)), and the dilution was mixed with 10 ml of medium containing 750 pg (7.5 pg/ml) of PEI, and the mixture was incubated at room temperature for
10 minutes. The incubated medium mixture was added to 100 ml
of the seeded cell culture which was then cultured at 150 rpm
in 8% C02 for 4 hours, after which 100 ml of FreeStyle 293
expression was added to the cell culture, followed by culture
for 6 days.
In accordance with the standard protocol, the protein
was purified from the collected cell culture supernatant. The
antibody was applied to a Protein A Sepharose column (GE
Healthcare), and washed with PBS (pH 7.4). The antibody was
eluted using 0.1 M glycine buffer (pH 3.0), and then
immediately neutralized with 1M Tris buffer. The eluted
antibody fraction was concentrated while the buffer was
replaced with PBS (pH 7.4) by dialysis. The purified protein
was quantified by measuring the absorbance at 280 nm and the
absorption coefficient.
Example 2: Observation of Trafficking after Endocytosis
of Cytosol-Penetrating Antibody
Trafficking from endocytosis of the developed cytosol
penetrating antibody to localization into the cytosol was
observed. This may be an important clue to the mechanism of
endosomal escape into the cytosol.
FIG. 1 shows of a pulse-chase experiment and confocal
microscopy observation performed to observe the transport
process and stability of the cytosol-penetrating antibody
(cytotransmab) TMab4 or cell-penetrating peptide TAT
introduced into cells.
Specifically, a cover slip was added to 24-well plates,
and 2.5 x 104 HeLa cells per well were added to 0.5 ml of 10%
FBS-containing medium and cultured for 12 hours under the
conditions of 5% CO2 and 37°C. When the cells were stabilized,
the cells were transiently transfected with pcDNA3.4-flag
rabl. To maximize the efficiency of transient transfection,
Opti-MEM media (Gibco) was used. 500 ng of pcDNA3.4-flag
rabl to be transiently transfected was incubated with pl of
Opti-MEM media and 2 pl of Lipofectamine 2000 (Invitrogen,
USA) in a tube at room temperature for 20 minutes, and then
added to each well. Additionally, 450 pl of antibiotic-free
DMEM medium was added to each well which was then incubated
at 37°C in 5% CO 2 for 6 hours, after which the medium was
replaced with 500 pl of 10% FBS-containing DMEM medium,
followed by incubation for 24 hours. Next, each well was
treated with 3 pM of TMab4 in 0.5 ml of fresh medium for 30
minutes, and then washed rapidly three times with PBS and
incubated in medium at 370C for 0, 2 and 6 hours. Thereafter, the medium was removed, and each well was washed with PBS, and then proteins attached to the surface were removed with weakly acidic solution (200 mM glycine, 150 mM NaCl pH 2.5).
After washing with PBS, the cells were fixed in 4%
paraformaldehyde at 250C for 10 minutes.
After washing with PBS, each well was incubated with PBS
buffer containing 0.1% saponin, 0.1% sodium azide and 1% BSA
at 250C for 10 minutes to form pores in the cell membranes.
After washing with PBS, each well was incubated with PBS
buffer containing 2% BSA at 250C for 1 hour to eliminate
nonspecific binding. Then, the cells were stained with an
FITC (green fluorescence) or TRITC (red fluorescence)-labeled
antibody (Sigma) that specifically recognizes human Fc. Rab5
was incubated with anti-rab5 against the early endosome
marker rab5. Each well was incubated with anti-flag
antibodies against a flag-tag of rabl, a recycling endosome
marker, at 250C for 1 hour, and was then incubated with TRITC
(red fluorescence) or FITC (green fluorescence)-labeled
secondary antibody at 250C for 1 hour. To observe late
endosomes and lysosomes, the cells being incubated were
treated with 1 mM LysoTracker Red DND-99 at 30 minutes before
cell fixation. The nucleus was blue-stained with Hoechst33342
and observed with a confocal microscope. As a result, it was
shown that, unlike TAT, TMab4 was located in early endosomes up to 2 hours, and then was not transported to lysosomes or recycling endosomes.
Example 3: Evaluation of the Effect of Acidification in
Early Endosomes on Endosomal Escape
To obtain more clear evidence that the cytosol
penetrating antibody of the present disclosure escapes from
early endosomes, an experiment was performed using inhibitors.
Specifically, the inhibitors used were wortmannin that
inhibits maturation from early endosomes to late endosomes,
bafilomycin that prevents endosomal oxidation by inhibiting
ATPase hydrogen pump, and brefeldin A that inhibits transport
from endosomes to endoplasmic reticulum and Golgi.
FIG. 2a shows the results of confocal microscopy
observation of the cytosol-penetrating ability of the
cytosol-penetrating antibody TMab4 or the cell-penetrating
peptide TAT according to the present disclosure in the
presence or absence of an inhibitor thereof.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. When the cells were
stabilized, the cells were incubated with each of 100 nM
wortmannin, 200 nM bafilomycin and 7 pM brefeldin A for 30
minutes. Next, the cells were incubated with each of PBS, 2
pM TMab4 and 2 pM TAT at 370C for 6 hours. The cells were
washed with PBS and weakly acidic solution in the same manner as described in Example 2, and then subjected to cell fixation, cell perforation and blocking processes. The TMab4 treated cells were stained with an FITC (green fluorescence) labeled antibody that specifically recognizes human Fc. The nucleus was blue-stained with Hoechst 33342 and observed with a confocal microscope. In the case of TMab4, green fluorescence localized in the cytosol was not observed only in the bafilomycin-treated cells, and spot-shaped fluorescence appeared.
FIG. 2b is a bar graph showing the results of
quantifying the FITC (green fluorescence) fluorescence of the
confocal micrographs shown in FIG. 2a.
Specifically, using Image J software (National
Institutes of Health, USA), 20 cells were selected in each
condition, and then the obtained mean values of fluorescence
are graphically shown.
FIG. 2c shows the results of observing the cytosolic
localization of the cytosol-penetrating antibody TMab4 or the
cell-penetrating peptide TAT according to the present
disclosure by confocal microscopy using calcein in the
presence or absence of an inhibitor thereof.
Specifically, HeLa cells were prepared in the same as
described in Example 2, and were incubated in serum-free
medium with each of 200 nM wortmannin, 200 nM bafilomycin and
7 pM brefeldin A for 30 minutes. Next, the cells were incubated with each of PBS, 2 pM TMab4 and 20 pM TAT at 370C for 6 hours. After 4 hours, each well containing PBS or the antibody was treated with 150 pM calcein and incubated at
370C for 2 hours. In the same manner as described in Example
2, the cells were washed with PBS and weakly acidic solution,
and then fixed.
The nucleus was blue-stained with Hoechst 33342 and
observed with a confocal microscope. As a result, green
calcein fluorescence appeared, indicating that calcein did
escape from endosomes into the cytosol by the cytosol
penetrating antibody TMab4 of the present disclosure and TAT.
However, in the case of TMab4, green calcein fluorescence
localized in the cytosol could not be observed only in the
bafilomycin-treated cells, unlike the cells treated with
other inhibitors.
FIG. 2d is a bar graph showing the results of
quantifying the calcein fluorescence of the confocal
micrographs shown in FIG. 2c.
Specifically, as shown in FIG. 2d, using Image J
software (National Institutes of Health, USA), 20 cells were
selected in each condition, and then the obtained mean values
of fluorescence are graphically shown.
Example 4: Evaluation of the Effect of HSPG Degradation
in Early Endosomes on Endosomal Escape
The cytosol-penetrating antibody is endocytosed by
binding to HSPG on the cell surface. At this time, it is
endocytosed with pro-heparanase. Pro-heparanase is activated
with endosomal acidification (Gingis-Velitski et al., 2004).
Activated heparanase degrades HSPG, and thus the cytosol
penetrating antibody can be freely localized in the cytosol.
FIG. 3a shows the results of Western blot analysis
performed to confirm siRNA (short interfering RNA)-induced
inhibition of heparanase expression.
Specifically, 1 x 104 HeLa cells were added to each well
of 6-well plates and cultured in 1 ml of 10% FBS-containing
medium at 370C in 5% C02 for 12 hours. After 24 hours of
culture, each well was transiently transfected with siRNA.
For transient transfection, 500 ng of each of a control siRNA
having no targeting ability and an siRNA targeting inhibition
of heparanase expression was incubated with 500 pl of Opti
MEM media (Gibco) and 3.5 pl of Lipofectamine 2000
(Invitrogen, USA) in a tube at room temperature for 20
minutes, and then added to each well. 500 pl of antibiotic
free DMEM medium was added to each well which was then
incubated at 370C in 5% C02 for 6 hours. Next, the medium was
preplaced with 1 ml of 10% FBS-containing DMEM medium,
followed by incubation for 72 hours.
After incubation, lysis buffer (10 mM Tris-HCl pH 7.4,
100mM NaCl, 1% SDS, 1mM EDTA, Inhibitor cocktail(sigma)) was added to each well to a cell lysate. The cell lysate was quantified using a BCA protein assay kit (Pierce). The gel subjected to SDS-PAGE was transferred to a PVDF membrane, incubated with the antibody (SantaCruz)(which recognize heparanase and B-actin, respectively) at 250C for 2 hours, and then incubated with HRP-conjugated secondary antibody
(SantaCruz) at 250C for 1 hour, followed by detection.
Analysis was performed using ImageQuant LAS4000 mini (GE
Healthcare).
FIG. 3b shows the results of confocal microscopy
observation of cytosol penetrating antibody/lysosome merging
caused by inhibition of heparanase expression.
Specifically, HeLa cells with inhibited inhibition of
heparanase expression and control HeLa cells were prepared in
the same manner as described in Example 2. The cells were
treated with each of 3 pM TMab4 and 20 pM FITC-TAT at 370C
for 30 minutes, washed rapidly three times with PBS, and then
incubated in medium at 370C for 2 hours. In the same manner
as described in Example 2, the cells were washed with PBS and
weakly acidic solution, and then subjected to cell fixation,
cell perforation and blocking processes.
The TMab4-treated cells were stained with an FITC (green
fluoescence)-labeled antibody that specifically recognizes
human Fc. The cells were incubated with anti-LAMP-1 (santa
cruz) against the lysosome marker LAMP-1 at 250C for 1 hour, and incubated with TRITC (red fluorescence)-labeled secondary antibody at 25°C for 1 hour. The nucleus was blue-stained with Hoechst 33342 and observed with a confocal microscope.
In the case of TMab4, merging with LAMP-1 was observed when
heparanase expression was inhibited.
FIG. 3c shows the results of confocal microscopy
observation performed to confirm the cytosolic localization
of a cytosol-penetrating antibody, which is caused by
inhibition of heparanase expression.
Specifically, HeLa cells with inhibited inhibition of
heparanase expression and control HeLa cells were prepared in
the same manner as described in Example 2. The cells were
treated with each of 2 pM TMab4 and 20 p4M FITC-TAT at 37°C
for 6 hours. After 4 hours, each well containing PBS or the
antibody was treated with 150 pM calcein and incubated at
37°C for 2 hours. In the same manner as described in Example
2, the cells were washed with PBS and weakly acidic solution,
and then fixed. The nucleus was blue-stained with Hoechst
33342 and observed with a confocal microscope. In the cells
with inhibited expression of heparanase, calcein fluorescence
that localized to the cytosol by TMab4 could not be observed.
FIG. 4 is a schematic view showing an overall
trafficking process ranging from cellular internalization of
a cytosol-penetrating antibody according to the present
disclosure to localization of the antibody in the cytosol.
Example 5: Observation of Introduction of Cytosol
Penetrating Intact IgG-Format Monoclonal Antibody through
Cell Membrane at Varying pHs
In order for the cytosol-penetrating antibody of the
present disclosure to localize in the cytosol after
endocytosis, an endosomal escape process is essential. Until
now, there has been no report on endosomal escape of
antibodies. To elucidate the endosomal escape mechanism, an
experiment was performed at simulated endosomal pH.
The components of the inner phospholipid layer of early
endosomes are similar to those of the outer phospholipid
layer of the cell membrane (Bissig and Gruenberg, 2013), and
the major component of the phospholipid layer is 1-palmitoyl
2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC). Thus,
assuming that the outer phospholipid layer of the membrane of
Ramos cells expressing no HSPG is the same as the inner
phospholipid layer of early endosomes, an experiment was
performed.
FIG. 5 shows the results of observing a fluorescence
labeled cytosol-penetrating antibody in Ramos cells by
confocal microscopy in order to examine whether the antibody
can be introduced through the cell membrane depending on pH
or whether the antibody can induce cell membrane permeation
of other substances.
Specifically, a cover slip was added to 24-well plates,
and 200 pl of 0.01% poly-L-lysine solution was added to
attach suspending Ramos cells to the plate, followed by
incubation at 250C for 20 minutes. After washing with PBS, 5
x 104 Ramos cells were added to each well and incubated in 0.5
ml of 10% FBS-containing medium at 370C for 30 minutes. After
confirming cell adhesion, the cells were incubated in 200 pl
of pH 7.4 buffer (HBSS (Welgene), 50 mM HEPES pH 7.4) or pH
5.5 buffer (HBSS (Welgene), 50 mM MES pH 5.5) with each of 10
pM PBS and TMab4 labeled directly with the fluorescent
reagent DyLight-488, 10 pM non-labeled TMab4 and 2 pM control
antibody adalimumab labeled directly with DyLight-488, at
370C for 2 hours. Adalimumab used as the control antibody is
a therapeutic antibody that targets extracellular cytokines.
In the same manner as described in Example 2, the cells
were washed with PBS, and then fiaxed. The nucleus was blue
stained with Hoechst 33342 and observed with a confocal
microscope. At pH 5.5, the fluorescence of TMab4 labeled
directly with DyLight-488 was observed. At pH 5.5, green
FITC fluorescence was observed in the cells treated with
TMab4 and adalimumab labeled directly with DyLight-488. It
was confirmed that the cytosol-penetrating antibody was
introduced through the cell membrane at acidic pH and could
introduce other substance as well as itself.
In addition, it was confirmed that the morphology of the
cell membrane was maintained, even though the substance was
introduced externally.
Example 6: Examination of Whether Cytosol-Penetrating
Antibody Forms Pores by Trypan Blue Uptake Depending on pH
Among known endosomal escape mechanisms, endosomal
perforation was expected to be the most promising endosomal
escape mechanism by which an intact IgG-format substance can
escape from endosomes while maintaining the morphology of
endosomes as shown in the experimental results.
Similar to Example 5, an experiment was performed in
order to observe the morphology of the cell membrane when the
cytosol-penetrating antibody passed through the cell membrane.
FIG. 6a shows the results of observing Ramos cells by an
optical microscope in order to examine whether a cytosol
penetrating antibody can form pores and take up trypan blue
having no membrane-permeating ability, depending on pH.
pH 7.4 buffer (HBSS (Welgene), 50 mM HEPES pH 7.4) or pH
5.5 buffer (HBSS (Welgene), 50 mM MES pH 5.5)
Specifically, 5 x 104 Ramos cells were attached to each
well of 24-well plates in the same manner as described in
Example 5. After confirming cell adhesion, the cells were
incubated with each of TMab4 and 1 pM and 10 pM of adalimumab
in 200 pl of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES pH
7.4(cytosol pH)) and pH 5.5 buffer (HBSS(Welgene), 50 mM MES
pH 5.5)(early endosomal pH)) at 370C for 2 hours. After
pl careful washing with PBS, 200 pl of a mixture of 190 of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope.
FIG. 6b is a graph quantitatively comparing the number
of cells that have taken up trypan blue.
Specifically, the number of cells showing trypan blue
uptake was counted and expressed as percentage relative to
the total number of cells. A total of 400 or more cells were
counted, and the mean values are graphically shown.
As shown in FIG. 6b, only at pH 5.5, the cells treated
with the cytosol-penetrating antibody TMab4 of the present
disclosure showed trypan blue uptake in a concentration
dependent manner. In addition, it was shown that the
morphology of the cell membrane during the passage of the
cytosol-penetrating antibody was maintained.
Example 7: Observation of Temporary ad Reversible Pore
Formation by Cytosol-Penetrating Antibody
In the case of conventional peptides known to show a
pore formation mechanism by the endosomal escape mechanism,
it is known that the alpha-helical structure of the peptides
forms pores through the cell membrane.
However, since antibodies have no alpha-helical
structure, they were generally considered almost impossible
to form pores through the cell membrane. Thus, it was assumed
that the antibody would escape from endosomes after temporary
pore formation, and then the cell membrane would be
reversibly restored. To demonstrate this assumption, an
experiment was performed.
FIG 7a shows the results of optical microscopic
observation performed to confirm whether cell membrane pores
produced by a cytosol-penetrating antibody at pH 5.5 is
temporary and reversible.
Specifically, 5 x 104 Ramos cells were attached to each
well of 24-well plates in the same manner as described in
Example 5. After conforming cell adhesion, the cells were
incubated with 10 pM of TMab4 in 200 pl of pH 5.5 buffer
(HBSS (Welgene), 50 mM MES pH 5.5) at 370C for 2 hours in
order to maintain an early endosomal pH of 5.5. The buffer
was replaced with fresh buffer, and the cells were incubated
for 2 hours so that the cells could be recovered. After
careful washing with PBS, 200 pl of a mixture of 190 pl of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope.
FIG. 7b is a graph quantitatively comparing the number
of cells that have taken up trypan blue uptake. Specifically,
a total of 400 or more cells were counted, and the mean values are graphically shown. As shown in FIG. 7b, at pH 5.5, the cells treated with TMab4 having endosomal escape ability according to the present disclosure did take up trypan blue immediately after addition of TMab4, but the cells subjected to recovery in the medium did not take up blue uptake. Namely, it was confirmed that pore formation by the cytosol penetrating antibody was a temporary and reversible phenomenon.
Example 8: Observation of Membrane Binding and Lipid
Membrane Flip-Flop of Cytosol-Penetrating Intact IgG-Format
Monoclonal Antibody at Varying pHs
The pore formation mechanism is a mechanism by which
pores are formed while maintaining the overall morphology of
the cell membrane and a substance escapes from endosomes into
the cytosol through the pores. For pore formation, it is
known that a substance interacts with the inner phospholipid
layer of endosomes, and then membrane pores are formed by a
flip-flop mechanism (H. D. Herce et al., 2009).
Thus, in order for endosomal escape occurs by pore
formation in early endosomes, an antibody should first bind
to the cell membrane by endosomal acidification. To confirm
this, an experiment was performed.
FIG. 8 shows the results of analyzing the cell membrane
binding of a cytosol-penetrating antibody and control
antibody adalimumab by flow cytometry (FACS) at varying pHs.
Specifically, 1x10 5 Ramos were prepared for each sample.
The cells were washed with PBS, and then incubated with each
of 5 pM TMab4 and 5 pM adalimumab in each of pH 7.4 buffer
(TBS, 2% BSA, 50 mM HEPES pH 7.4)(for maintaining a cytosolic
pH of 7.4) and pH 5.5 buffer (TBS, 2% BSA, 50 mM MES pH 5.5)
(for maintaining an early endosomal pH) at 40C for 1 hour.
The cells were washed with each pH buffer, and then the cells
treated with each of TMab4 or adalimumab were incubated with
FITC (green fluorescence)-labeled antibody (which
specifically recognizes human Fc) at 40C for 30 minutes. The
cells were washed with PBS, and then analyzed by flow
cytometry. As a result, it was shown that, at pH 5.5, only
TMab4 did bind to the cell membrane.
FIG. 9 shows the results of analyzing the cell membrane
flip-flop inducing abilities of a cytosol-penetrating antibody
and control antibody adalimumab by flow cytometry (FACS) at
varying pHs.
Specifically, 1x10 5 Ramos cells were prepared for each
sample. The cells were washed with PBS, and then incubated
with each of 5 pM TMab4 and 5 pM adalimumab in each of pH 7.4
buffer (TBS, 2% BSA, 50 mM HEPES pH 7.4) (for maintaining a
cytosolic pH of 7.4) and pH 5.5 buffer (TBS, 2% BSA, 50 mM
MES pH 5.5) (for maintaining an early endosomal pH of 5.5) at
40C for 1 hour.
The cells were washed with each pH buffer, and then
incubated with FITC (green fluorescence)-labeled Annexin-V at
250C for 15 minutes. Annexin-V is a substance that targets
phosphatidylserine, a lipid present only in the cell membrane,
and only when cell membrane lipid flip-flop occurs, the lipid
can be exposed to the outside and Annexin-V can bind thereto.
After washing with PBS, the cells were analyzed by flow
cytometry. As a result, it was confirmed that, at pH 5.5,
Annexin-V did bind only to TMab4.
FIG. 10 is a schematic view showing a pore formation
model of a cytosol-penetrating antibody, expected based on
the above-described experiments.
Example 9: Logic of Prediction of pH-Dependent Change in
Properties
The reason why the cytosol-penetrating antibody
according to the present disclosure showed different cytosol
penetration properties depending on pH was assumed to be
because a pH-dependent change in interaction between antibody
residues led to a change in the properties.
To demonstrate this assumption, literature search was
performed. As a result, it was confirmed that as pH decreases
from 7.4 (neutral pH) to 5.0, aspartic acid (D) and glutamic acid (E) among amino acids lose negative charge by protonation and becomes hydrophobic (Korte et al., 1992).
Specifically, aspartic acid (D) and glutamic acid (E)
, which have become hydrophobic, hydrophobically interact with
methionine (M), leucine (L) and isoleucine (I), which are
originally hydrophobic amino acids. The phenomenon that the
surrounding amino acids induce structural modification
through this newly formed interaction is defined as the
Tanford transition (Qin et al., 1998). To confirm this pH
dependent change in the properties, an experiment was
performed (Di Russo et al., 2012).
In a hT4 VL structure which is a cytosol-penetrating
light-chain variable region, hydrophobic amino acids,
methionine (M), isoleucine (I) and leucine (L), which
surround histidine (H), aspartic acid (D) and glutamic acid
(E), which can show a difference between pH 7.4 and pH 5.0,
were examined.
Among these amino acids, candidate amino acids where the
distance between the side chains of two amino acids was less
than 6-7A were identified, and a pair of the 1st and 9 5 th
amino acids from the N-terminus were selected as candidate
amino acids capable of showing the Tanford transition effect.
Among the pair of the 1st and 9 5 th amino acids, the 9 5 th
amino acid is an amino acid present in the sequence VL-CDR3
of the cytosol-penetrating light-chain variable region hT4 VL.
It was confirmed that the 95th amino acid could induce a
change in the VL-CDR3 loop structure through a phenomenon,
such as the Tanford transition, by interaction with the lst
amino acid.
It was confirmed that, in the cytosol-penetrating light
chain variable region hT4 VL, the amino acids of the VL-CDR3
loop which was structurally changed by the 1st and 9 5 th amino
acids include a very high proportion of tyrosine (Y) which
easily interacts with 1-palmitoyl-2-oleoyl-sn-glycero-3
phosphatidylcholine (POPC) which is the major component of
the inner phospholipid layer of early endosomes (Morita et
al., 2011).
FIG. 11 shows the results of predicting the pH-dependent
structural change of a cytosol-penetrating antibody on the
basis of the WAM modeling structure of the light-chain
variable region of the cytosol-penetrating antibody, and
shows amino acids, which are involved in the structural
change, and amino acids which are exposed by the structural
change.
In order to confirm the pH-dependent change in
properties induced by the 1st and 9 5 th amino acids and the
endosomal escape resulting from the change, mutants were
constructed by substituting the 1st and 9 5 th amino acids with
alanine (A).
In addition, in order to confirm the pH-dependent change
in properties induced by the 1st and 9 5 th amino acids and the
endosomal escape resulting from the change, mutants were
constructed by substituting the 1st and 9 5 th amino acids with
glutamic acid (E) and leucine having properties similar
thereto.
Table 1 shows the names and sequences of mutants
constructed using an overlap PCR technique.
[Table 1]
Name of Variable Sequence SEQ ID NO Region 1 10 20 abcdef 30 40 50 hT4 VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQID 60 70 80 90 100 NO:65 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-D1AVL ALVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:66 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-M95A VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:67 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYHAYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-D1E VL ELVMTOSPSSLSASVGDRVTIITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:68 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYYCQQYYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-M95L VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:69 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYHLYTFGQGTKVEIKR
In the same manner as described in Example 1, cloning,
expression in HEK293F cell lines, and purification were
performed.
Example 10: Observation of pH-Dependent Change in
Properties of Cytosol-Penetrating Antibody
FIG. 12 is a graph quantitatively comparing the number
of cells that have taken up trypan blue at varying pHs by
mutants (TMab4-D1A), (TMab4-M95A), (TMab4-D1E), and (TMab4
M95L) constructed by substituting the 1st amino acid aspartic
acid (D), the 9 5 th amino acid methionine (M), the 1st amino
acid aspartic acid (A), and the 9 5 th amino acid methionine (M)
of a light-chain variable region (VL), which are involved in
induction of a structural change of a cytosol-penetrating
antibody at acidic pH, with alanine (A), alanine (A),
glutamic acid (E), and leucine (L), respectively.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with lOpM of each of TMab4, Adalimumab, TMab4-D1A,
TMab4-M95A, TMab4-D1E and TMab4-M95L in 200 pl of each of pH
7.4 buffer (HBSS(Welgene), 50 mM HEPES pH 7.4)(for
maintaining a cytosolic pH of 7.4) and pH 5.5 buffer
(HBSS(Welgene), 50 mM MES pH 5.5) (for maintaining an early
endosomal pH of 5.5) at 370C for 2 hours.
After careful washing with PBS, 200 pl of a mixture of
190 pl of PBS and 10 pl of trypan blue was added to each well,
and the cells were observed with a microscope. The number of
cells showing trypan blue uptake was counted and expressed as
percentage relative to the total number of cells. A total of
400 or more cells were counted, and the mean values are
graphically shown.
It was confirmed that the mutants, TMab4-D1A and TMab4
M95A, showed little or no trypan blue uptake, unlike TMab4.
TMab4-D1E and TMab4-M95L showed trypan blue uptake similar to
that of TMab4. This suggests that the 1 st amino acid and the
95th amino acid play an important role in endosomal escape.
Example 11: Investigation of Amino Acids and Motifs
Contributing to Endosomal Escape Ability of Cytosol
Penetrating Antibody
Through the experimental examples obtained in the above
Examples, it was found that the pH-dependent change in the
properties of the antibody occurred by interaction with the
1 't and 95th antibodies of the cytosol-penetrating antibody and
that endosomal escape was induced by the change in the
properties.
In order to confirm endosomal escape induced by the pH
dependent change in the properties, mutants were constructed by substituting amino acids of VL-CDR3, which were expected to interact with phospholipid, with alanine (A).
Specifically, based on the results of structural
modeling analysis, mutants were constructed by simultaneously
substituting the 9 2 "d, 9 3 rd and 9 4 th amino acids, which were
most likely to be exposed to the surface, with alanine (A).
Table 2 below shows the names and sequences of mutants
constructed using an overlap PCR technique.
[Table 2]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 hT4-Y91A VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:70 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQAYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-Y92A VL DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQOKPGKAPKLLIYW 60 70 80 90 100 NO:71 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYAYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-Y93A VL DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:72 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYAHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-H94A VL DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:73 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYAMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-AAA VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:74 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYAAAMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-Y96A VL DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:75 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYYCQQYYYHMATFGQGTKVEIKR
In the same manner as described in Example 1, cloning,
expression in HEK293F cell lines, and purification were
performed.
FIG. 13 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by
mutants constructed by substituting the 9 2nd, 93 , and 9 4 th
amino acids of the CDR3 of the light-chain variable region
(VL) of a cytosol-penetrating antibody, which can possibly be
involved in endosomal escape, with alanine.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of buffer and 10 pM of TMab4, TMab4-Y91A,
TMab4-Y92A, TMab4-Y93A, TMab4-H94A, TMab4-AAA and TMab4-Y96A
in 200 g0 of each of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES
pH 7.4)(for maintaining a cytosolic pH of 7.4) and pH 5.5
buffer (HBSS(Welgene), 50 mM MES pH 5.5)(for maintaining an
early endosomal pH of 5.5) at 370C for 2 hours.
After careful washing with PBS, 200 pl of a mixture of
190 pl of PBS and 10 pl of trypan blue was added to each well,
and the cells were observed with a microscope. The number of
cells showing trypan blue uptake was counted and expressed as
percentage relative to the total number of cells. A total of
400 or more cells were counted, and the mean values are
graphically shown. It was shown that TMab4-Y92A, TMab4-Y93A
and TMab4-H94A showed significantly reduced trypan blue uptake compared to TMab4. In particular, TMab4-AAA showed little or no trypan blue uptake. However, TMab4-Y91A and
TMab4-Y96A showed trypan blue uptake similar to that of TMab4.
This suggests that the 9 2nd, 9 3r and 9 4 th amino acids greatly
contribute to endosomal escape.
Example 12: Confirmation of Contribution of CDR1 and
CDR2 of Cytosol-Penetrating Antibody Light-Chain Variable
Region (VL) to Endosomal Escape
The above-described experimental results demonstrated
that the CDR3 of the light-chain variable region (VL) is
involved in endosomal escape. Then, in order to elucidate the
effect of the CDR1 and CDR2 of the light-chain variable
region (VL), which are involved in endocytosis, on endosomal
escape, an experiment was performed.
The CDR1 and CDR2 of the light-chain variable region
(VL) were substituted with CDR sequences which have the same
amino acid number or do not include the cationic patch
sequence of CDR1 involved in endocytosis, among human
germline sequences. At this time, amino acids known to be
important for the stability of the existing light-chain
variable region were conserved.
Table 3 below shows the names and sequences of mutants
constructed using genetic synthesis.
[Table 3]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcd 40 50 SEQ ID hT4-01 VL DLVMTOSPSSLSASVGDRVTITCKASOGLSSYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:76 ASTLESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-02 VL DLVMTOSPSSLSASVGDRVTITCKSSOSLLYSSNNKNYLAWYOQKPGKAPKLLIYW 60 70 80 90 100 N0:77 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYYYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ 1D hT4-03 VL DLVMTOSPSSLSASVGDRVTITCKSSOSLLDSDDGNTYLAWYOKPGKAPKLLIYW 60 70 80 90 100 NO:78 LSYRASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYYYHMYTFGQGTKVEIKR
In the same manner as described in Example 1, cloning,
expression in HEK293F cell lines, and purification were
performed.
FIG. 14a shows the results of confocal microscopy
performed to analyze the cytosol-penetrating ability of
mutants constructed by substituting the CDR1 and CDR2 of the
light-chain variable region (VL) of a cytosol-penetrating
antibody, which bind to HSPG receptor and are involved in
cytosol-penetrating ability, with human germline sequences.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. When the cells were
stabilized, the cells were incubated with each of PBS and 2
pM TMab4, TMab4-01, TMab4-02 and TMab4-03 at 37°C for 6 hours.
The cells were washed with PBS and weakly acidic solution in the same manner as described in Example 2, and then subjected to cell fixation, cell perforation and blocking processes.
TMab4 was stained with an Alexa-488 (green
fluorescence)-labeled antibody that specifically recognizes
human Fc. The nucleus was blue-stained with Hoechst33342 and
observed with a confocal microscope. All the three mutants
showed reduced intracellular fluorescence compared to wild
type TMab4. In particular, in the case of TMab4-03, little or
no intracellular fluorescence was observed.
FIG. 14b shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on pH
by mutants constructed by substituting the CDR1 and CDR2 of
the light-chain variable region (VL) of a cytosol-penetrating
antibody, which bind to HSPG receptor and are involved in
cytosol-penetrating ability, with human germline sequences.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of buffer and 10 pM of TMab4, TMab4-01,
TMab4-02 and TMab4-03 in 200 #0 of each of pH 7.4 buffer
(HBSS(Welgene), 50 mM HEPES pH 7.4)(for maintaining a
cytosolic pH of 7.4) and pH 5.5 buffer (HBSS(Welgene), 50 mM
MES pH 5.5)(for maintaining an early endosomal pH of 5.5) at
370C for 2 hours. After careful washing with PBS, 200 pl of a
mixture of 190 pl of PBS and 10 pl of trypan blue was added
to each well, and the cells were observed with a microscope.
The number of cells showing trypan blue uptake was counted
and expressed as percentage relative to the total number of
cells. A total of 400 or more cells were counted, and the
mean values are graphically shown. As a result, the mutants,
TMab4-01 and TMab4-03, showed trypan blue uptake similar to
that of TMab4. Namely, it was demonstrated that, in the
light-chain variable region, the region involved in
endocytosis (VL-CDR1 and VL-CDR2) is distinguished from the
region involved in endosomal escape (VL-CDR3).
Example 13: Logic of Improvement in Endosomal Escape
Ability of Cytosol-Penetrating Antibody
The 9 2n, 9 3rd and 9 4 th amino acids are expected to
increase solvent accessibility for binding to the inner
phospholipid membrane of early endosomes, which is the early
mechanism of endosomal escape, through the change in
properties of VL-CDR3 by interaction with the 1 st and 9 5 th
amino acids of the cytosol-penetrating light-chain variable
region. These amino acids are tyrosine (Y), tyrosine (Y) and
histidine (H), respectively.
These amino acids easily interact with 1-palmitoyl-2
oleoyl-sn-glycero-3-phosphatidylcholine (POPC) which is the
major component of the inner phospholipid layer of early
endosomes.
In order to confirm that the three amino acids expected
to be exposed due to a change in pH conditions interact with
the inner phospholipid layer of early endosomes and are
involved in endosomal escape and to increase the proportion
of cytosol-penetrating antibody that escapes from endosomes,
mutants for the 9 2nd 9 3 rd and 9 4 th amino acids were
constructed.
For mutant construction, literature search was performed,
and as a result, amino acids that easily interact with 1
palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC)
were selected (Morita et al., 2011). The mutant design was
made such that the selected amino acids are introduced into
the 9 2n, 9 3 rd and 9 4 th amino acids.
Specifically, the average binding activity of 20
different amino acids for 1-palmitoyl-2-oleoyl-sn-glycero-3
phosphatidylcholine (POPC) is higher in the order of
tryptophan (W), phenylalanine (F), tyrosine (Y), leucine (L),
isoleucine (I), cysteine (C), and methionine (M).
Specifically, the binding activity of 20 different amino
acids for the hydrophilic head portion of 1-palmitoyl-2
oleoyl-sn-glycero-3-phosphatidylcholine (POPC) is higher in
the order of arginine (R), tryptophan (W), tyrosine (Y),
histidine (H), asparagine (N), glutamine (Q), lysine (K),
and phenylalanine (F) . In addition, the binding activity of
20 different amino acids for the hydrophobic head portion of
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC)
is higher in the order of tryptophan (W), phenylalanine (F),
leucine (L) , methionine (M) , isoleucine (I) , valine V) , and
tyrosine (Y).
Based on such results, it was confirmed that tryptophan
(W) is an amino acid that most easily interacts with POPC
which is the major component of the inner phospholipid layer
of early endosomes (Morita et al., 2011). Thus, in the
present disclosure, a strategy of substituting one or two
amino acids with tryptophan (W) was adopted.
Tables 4, 5 and 6 below show the sequences of the
designed mutant light-chain variable regions expected to
improve the endosomal escape ability of the human antibody
having cytosol-penetrating ability. Table 4 below shows the
full-length sequences of the light-chain variable regions of
the human antibody according to the Kabat numbering system,
and Tables 5 and 6 below show the CDR1 and CDR2 sequences or
CDR3 sequences of the antibody sequences shown in Table 4.
[Table 4]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 SEQ ID hT4-WWH VL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:1 ASTRESGVPSRFSGSGSGTDFTLTISSL0PEDFATYYCQQYWWHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-WYW VL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:2 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-YWWVL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:3 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYYWWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-WYH VL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:4 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYWYHMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-YWH VL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 60 70 80 90 100 NO:5 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYYWHMYTFGQGTKVEIKR
[Table 5]
CDR2 CDR1 Sequence Sequence
KaSbatN.n Light Chain Variable K S S Q S L F N S R T R K N Y L A W A S T R E S Region
SEQ ID NO: SEQ ID NO:6 SEQ ID NO:7
[Table 6]
Name of Light SEQID Chain CDR3 Sequence NO: Variable Region Kabat No.
SEQ ID hT4-WWH VL QQYWWHMYT MY NO:8 SEQ ID hT4-WYW VL QQYWYWMYT NO:9 SEQ ID hT4-YWW VL QQYYWWMYT MY NO:10 SEQ ID hT4-WYH VL QQYWYHMYT MY NO:11 SEQ ID hT4-YWHVL QQYYWHMYT MY NO:12 Example 14: Expression and Purification of Cytosol
Penetrating Antibody Mutants Expected to Have Increased
Endosomal Escape Ability and Confirmation of Maintenance of
Cytosol-Penetrating Ability
For animal cell expression of cytosol-penetrating
antibody mutants expected to have increased endosomal escape
ability, vectors expressing the light chain were constructed
as described in Example 1 above. To this end, DNA encoding a
light chain comprising the cytosol-penetrating light-chain variable region (hT4 VL) or the mutant antibody's light-chain variable region (hT4-WWH VL, hT4-WYW VL, hT4-YWW VL, hT4-WYH
VL, hT4-YWH VL) and light chain constant region (CL), which
has a secretion signal peptide-encoding DNA fused to the 5'
end, was cloned into a pcDNA3.4 vector (Invitrogen) by use of
NotI/HindIII.
Next, a humanized hTO VH-encoding animal expression
vector and the constructed animal expression vector encoding
the light chain comprising the light-chain variable region
expected to have increased endosomal escape ability were
transiently transfected into HEK293F protein-expressing cells.
Next, purification of the cytosol-penetrating antibody mutant
expected to have increased endosomal escape ability was
performed in the same manner as described in Example 1.
FIG. 15a shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability.
Specifically, under non-reducing conditions, a molecular
weight of about 150 kDa was observed, and under reducing
conditions, the heavy chain showed a molecular weight of 50
kDa, and the light chain showed a molecular weight of 25 kDa.
This suggests that the expression and purified cytosol
penetrating antibody mutants expected to have increased
endosomal escape ability are present as monomers in a solution state and do not form dimers or oligomers through non-natural disulfide bonds.
FIG. 15b shows the results of confocal microscopy
performed to examine whether the cytosol-penetrating ability
of cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability is maintained.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2 above. When the cells were
stabilized, the cells were incubated with each of PBS and 2
pM TMab4, TMab4-WWH, TMab4-WYW, TMab4-YWW, TMab4-WYH and
TMab4-YWH at 370C for 6 hours.
The cells were washed with PBS and weakly acidic
solution in the same manner as described in Example 2, and
then subjected to cell fixation, cell perforation and
blocking processes. Each antibody was stained with an FITC
(green fluorescence)-labeled antibody that specifically
recognizes human Fc. It was found that in all the five
mutants, the cytosol-penetrating ability was maintained.
Example 15: Confirmation of pH Dependence of Cytosol
Penetrating Antibody Mutants Expected to Have Increased
Endosomal Escape Ability
FIG. 16 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by a
cytosol-penetrating antibody wild-type and cytosol penetrating antibody mutants expected to have improved endosomal escape ability.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of 1 pM TMab4, Adalimumab, TMab4-WWH,
TMab4-WYW, TMab4-YWW, TMab4-WYH and TMab4-YWH in 200 #0 of
each of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES pH
7.4(cytosol pH)) and pH 5.5 buffer (HBSS(Welgene), 50 mM MES
pH 5.5(early endosomal pH)) (early endosomal pH) at 370C for
2 hours. After careful washing with PBS, 200 pl of a mixture
of 190 pl of PBS and 10 pl of trypan blue was added to each
well, and the cells were observed with a microscope. The
number of cells showing trypan blue uptake was counted and
expressed as percentage relative to the total number of cells.
A total of 400 or more cells were counted, and the mean
values are graphically shown. Among the five mutants, TMab4
WYW, TMab4-YWW, TMab4-WYH and TMab4-YWH showed increased
trypan blue uptake, and among them, TMab4-WYW showed pH
dependent trypan blue uptake.
TMab4-WYW, which showed increased pH-dependent trypan
blue uptake while retaining the cytosol-penetrating ability
of the wild-type antibody, was selected as a final clone.
Example 16: Confirmation of Improvement in Cytosol
Localization of Cytosol-Penetrating Antibody Mutant Having
Increased Endosomal Escape Ability
FIG. 17a shows the results of observing the cytosolic
localization of a cytosol-penetrating antibody wild-type and
cytosol-penetrating antibody mutants expected to have
improved endosomal escape ability, by confocal microscopy
using calcein.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. The cells were incubated
with PBS or 0.1 pM, 0.5 pM and 1 pM of each of TMab4 and
TMab4-WYW in serum-free medium at 370C for 6 hours. After 4
hours, each well containing PBS or the antibody was treated
with 150 pM calcein and incubated at 370C for 2 hours. The
cells were washed with PBS and weakly acidic solution in the
same manner as described in Example 2, and then fixed. The
nucleus was blue-stained with Hoechst33342 and observed with
a confocal microscope. It was confirmed that TMab4-WYW showed
green calcein fluorescence with higher intensity even at
lower concentration than TMab4.
FIG. 17b is a bar graph showing the results of
quantifying the calcein fluorescence of the confocal
micrographs shown in FIG. 17a.
Specifically, using Image J software (National
Institutes of Health, USA), 20 cells were selected in each condition, and then the obtained mean values of fluorescence are graphically shown.
Example 17: Confirmation of Cytosol Localization of
Cytosol-Penetrating Monoclonal Antibody by Enhanced Split-GFP
Complementation Assay
FIG. 18 is a schematic view showing a process in which
GFP fluorescence by enhanced split-GFP complementation is
observed when a cytosol-penetrating antibody wild-type and a
mutant having improved endosomal escape ability localizes in
the cytosol.
Specifically, an enhanced split-GFP complementation
system was used to confirm that the cytosol-penetrating
antibody would localize to the cytosol. When the green
fluorescence protein GFP is split into a fragment 1-10 and a
fragment 11, the fluorescent property is removed, and when
the two fragments become closer to each other and are
combined with each other, the fluorescent property can be
restored (Cabantous et al., 2005).
Based on this property, the GFP fragment 1-10 was
expressed in the cytosol, and the GFP fragment 11 was fused
to the C-terminus of the cytosol-penetrating antibody. In
addition, for complementation between the GFP fragments,
streptavidin and streptavidin-binding peptide 2 (SBP2) having
high affinity were fused to the GFP fragments. Thus, the fact that GFP fluorescence indicates that the cytosol-penetrating antibody localizes in the cytosol.
Example 18: Expression and Purification of Cytosol
Penetrating Antibody Fused with GFP11-SBP2
For expression of a GFP11-SBP2-fused cytosol-penetrating
antibody in animal cells, GFP11-SBP2 was genetically fused to
the C-terminus of the heavy chain by three GGGGS linkers.
Next, the animal expression vector encoding the cytosol
penetrating light chain or the cytosol-penetrating light
chain having increased endosomal escape ability, and the
animal expression vector encoding the GFP11-SBP2-fused heavy
chain, were transiently co-transfected. Next, purification of
the GFP11-SBP2-fused cytosol-penetrating antibody was
performed in the same manner as described in Example 1.
FIG. 19 shows the results of 12% SDS-PAGE analysis under
reducing or non-reducing conditions after purification of a
GFP11-SBP2-fused cytosol-penetrating antibody wild-type and a
GFP11-SBP2-fused mutant having improved endosomal escape
ability.
Specifically, under non-reducing conditions, a molecular
weight of about 150 kDa was observed, and under reducing
conditions, the heavy chain showed a molecular weight of 50
kDa, and the light chain showed a molecular weight of 25 kDa.
This suggests that the expressed purified GFP11-SBP2-fused cytosol-penetrating antibody is present as a monomer in a solution state and does not form a dimer or an oligomer by a non-natural disulfide bond.
Example 19: Examination of GFP Fluorescence with Cytosol
Localization of GFP11-SBP2-Fused Cytosol-Penetrating Antibody
FIG. 20a shows the results of confocal microscopy
performed to examine the GFP fluorescence of a GFP11-SBP2
fused cytosol-penetrating antibody wild-type and a GFP11
SBP2-fused mutant having improved endosomal escape ability by
enhanced split-GFP complementation.
Specifically, transformed HeLa cells stably expressing
SA-GFP1-10 were prepared in the same manner as described in
Example 2. When the cells were stabilized, the cells were
incubated with PBS or 0.2, 0.4, 0.6, 0.8, 1.6 or 3.2 pM of
each of TMab4-GFP11-SBP2 and TMab4-WYW-GFP11-SBP2 at 370C for
6 hours.
In the same manner as described in Example 2, the cells
were washed with PBS and weakly acidic solution, and then
fixed. The nucleus was blue-stained with Hoechst 33342 and
observed with a confocal microscope. It was observed that
TMab4-WYW showed green GFP fluorescence with higher intensity
at lower concentration than TMab4.
FIG. 20b is a graph showing the results of quantifying
the GFP fluorescence of the confocal micrographs shown in FIG.
20a.
Specifically, using Image J software (National
Institutes of Health, USA), 20 cells were selected in each
condition, and then the obtained mean values of fluorescence
are graphically shown.
In order to quantitatively express and compare the
intracytosolic concentrations and endosomal escape
efficiencies of the GFP11-SBP2-fused intact IgG-format
antibody and the cytosol-penetrating antibody having
increased endosomal escape ability, an experiment was
performed.
Table 7 below shows the intracytosolic concentrations
and endosomal escape efficiencies of the GFP11-SBP2-fused
intact IgG-format antibody and the cytosol-penetrating
antibody having increased endosomal escape ability.
[Table 7]
Treated concentrations (pM)' Parameters. cytetransmabs. 0.14' 0.54' 10
Cytosolic concentration TMab4' 12t 54' 68± 4- 170± 9P TMab4-WYW' 34t 7P 23299' 527 t 35P
Endosomal escaping efficiency TMab4P 1.0.41 2.6 t 0.14 4.3+0.1' TMab4-WYW' 3.2 0.4- 8.7 t 0.1o 13.2 ± 0.5o
Example 20: In-Depth Analysis of Interaction between
Cytosol-Penetrating Antibody Having Increased Endosomal
Escape Ability and Lipid
It was found that when the 9 2 "d and 9 4 th amino acids of
the light-chain variable region CDR3 of the wild-type
cytosol-penetrating antibody were substituted with tryptophan,
the endosomal escape ability was increased.
In order to determine whether this increase in the
endosomal escape ability is due to improved interaction with
any part of the lipid, an experiment was performed.
Tryptophan (W) is an amino acid that easily interacts with
both the hydrophilic head and hydrophobic tail of the lipid.
When tryptophan is substituted with arginine (R) (which
easily interacts with the hydrophilic head), isoleucine (I)
(which easily interacts with the hydrophilic tail) or glycine
(G) (which very weakly interacts with the lipid) and the
activities are compared, it can be seen that the interaction
with any part of the lipid plays an important role.
In order to analyze in depth the interaction between the
cytosol-penetrating antibody having increased endosomal
escape ability and the lipid, mutants were constructed by
substituting tryptophan with each of arginine (R), isoleucine
(I) and glycine (G).
Table 8 below shows the names and sequences of the
mutants constructed using an overlap PCR technique.
[Table 8]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 SEQ ID hT4-RYR VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:13 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYRYRMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-IYl VL DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 NO:14 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYIYIMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 DLVMTOSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID hT4-GYGVL 60 70 80 90 100 NO:15 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYGYGMYTFGQGTKVEIKR
In the same manner as described in Example 1, cloning,
expression in HEK293F cell lines, and purification were
performed.
Example 21: In-Depth Analysis of Interaction between
Cytosol-Penetrating Antibody and Lipid
FIG. 21a is a graph showing the results of flow
cytometry (FACS) performed to analyze the cell membrane
binding of mutants obtained by substitution with arginine,
isoleucine and glycine, which are amino acids having
properties opposite to those of tryptophan.
Specifically, 1 x 105 Ramos cells were prepared for each
well. The cells were washed with PBS, and then incubated with
each of 3 pM TMab4, TMab4-WYW, TMab4-RYR, TMab4-IYI and
TMab4-GYG in each of pH 7.4 buffer (TBS, 2% BSA, 50 mM HEPES
pH 7.4(cytosolic pH)), and pH 5.5 buffer (TBS, 2% BSA, 50 mM
MES pH 5.5(early endosomal pH)) at 40C for 1 hour. After
washing with each pH buffer, TMab4, TMab4-WYW, TMab4-RYR,
TMab4-IYI and TMab4-GYG were incubated with an FITC (green
fluorescence)-labeled antibody (which specifically recognizes
human Fc) at 40C for 30 minutes. After washing with PBS, the
cells were analyzed by flow cytometry, and as a result, it
was found that, at pH 5.5, only TMab4 did bind to the cell
membrane.
FIG. 21b is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by
mutants obtained by substitution with arginine, isoleucine
and glycine, which are amino acids having properties opposite
to those of tryptophan.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of 1 pM TMab4, TMab4-WYW, TMab4-RYR,
TMab4-IYI and TMab4-GYG in 200 pl of each of pH 7.4 buffer
(HBSS(Welgene), 50 mM HEPES pH 7.4 (cytosolic pH)) and pH 5.5
buffer (HBSS(Welgene), 50 mM MES pH 5.5(early endosomal pH))
at 40C for 2 hours. After careful washing with PBS, 200 pl of
a mixture of 190 pl of PBS and 10 pl of trypan blue was added
to each well, and the cells were observed with a microscope.
The number of cells showing trypan blue uptake was counted and expressed as percentage relative to the total number of cells. A total of 400 or more cells were counted, and the mean values are graphically shown. As a result, TMab4-RYR,
TMab4-IYI and TMab4-GYG showed reduced trypan blue uptake
compared to TMab4-WYW.
FIG. 21c is a bar graph showing the results of observing
the cytosolic localization of mutants obtained by
substitution with arginine, isoleucine and glycine, which are
amino acids having properties opposite to those of tryptophan
by confocal microscopy using calcein and quantifying the
calcein fluorescence of the confocal micrographs.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. The cells were incubated
with each of 0.5 pM TMab4, TMab4-WYW, TMab4-RYR, TMab4-IYI
and TMab4-GYG 0.5 pM at 370C for 6 hours. After 4 hours, each
well containing PBS or the antibody was treated with 150 pM
calcein 150 pM and incubated at 370C for 2 hours. In the same
manner as described in Example 2, the cells were washed with
PBS and weakly acidic solution, and then fixed. The nucleus
was blue-stained with Hoechst33342 and observed with a
confocal microscope. In the cells treated with TMab4-RYR,
TMab4-IYI or TMab4-GYG, the green calcein fluorescence
localized in the cytosol was weaker than that in the cells
treated with TMab4-WYW.
Therefore, it was confirmed that interactions with all
the hydrophilic head and hydrophobic tail of the lipid were
involved in endosomal escape, and for this reason,
substitution with tryptophan increased the endosomal escape
ability.
Example 22: Expression and Purification of Intact IgG
Format Anti-Tubulin Cytosol-Penetrating Antibody
The mutant having increased endosomal escape ability can
more effectively target a protein located in the cytosol,
because the amount of antibody located in the cytosol will
increase.
FIG. 22a is a schematic view showing a process of
constructing an intact IgG-format anti-tubulin cytosol
penetrating antibody to be used to examine the activity of
cytosol-penetrating antibody mutants having improved
endosomal escape ability.
For the purpose of expression of an intact IgG-format
anti-tubulin cytosol-penetrating antibody in animal cells,
DNA encoding a heavy chain comprising the heavy-chain
variable region and heavy chain constant region (CH1-hinge
CH2-CH3) binding specifically to cytoskeletal tubulin, which
has a secretion signal peptide-encoding DNA fused to the 5'
end, was cloned into a pcDNA3.4 vector (Invitrogen) by use of
NotI/HindIII (Laurence et al., 2011).
Next, the animal expression vector encoding the cytosol
penetrating light chain or the cytosol-penetrating light
chain having increased endosomal escape ability, and the
constructed animal expression vector encoding the heavy chain
comprising the heavy-chain variable region that specifically
to tubulin, were transiently co-transfected into HEK293F
protein-expressing cells. Next, purification of the intact
IgG-format anti-tubulin cytosol-penetrating antibody was
performed in the same manner as described in Example 1.
FIG. 22b shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of an intact IgG-format anti-tubulin cytosol-penetrating
antibody.
Specifically, under non-reducing conditions, a molecular
weight of about 150 kDa was observed, and under reducing
conditions, the heavy chain showed a molecular weight of 50
kDa, and the light chain showed a molecular weight of 25 kDa.
This suggests that the expressed purified intact IgG-format
anti-tubulin cytosol-penetrating antibody is present as a
monomer in a solution state and does not form a dimer or an
oligomer by a non-natural disulfide bond.
Example 23: Confirmation of Cytoskeletal Tubulin
Specific Binding of Intact IgG-Format Anti-Tubulin Cytosol
Penetrating Antibody
FIG. 22c shows the results of confocal microscopy
performed to examine whether an intact IgG-format anti
tubulin cytosol-penetrating antibody would merge with
cytoskeletal tubulin localized in the cytosol.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. The cells were incubated
with PBS or each of 3 pM TuT4 and TuT4-WYW in 500 pl of 10%
FBS-containing medium at 370C for 6 hours. The cells were
washed with PBS and weakly acidic solution in the same manner
as described in Example 2, and then subjected to cell
fixation, cell perforation and blocking processes.
Cytoskeletal tubulin was incubated with anti-tubulin
antibody (Santa Cruz) at 250C for 1 hour, and incubated with
TRITC (red fluorescence)-labeled secondary antibody at 250C
for 1 hour. Each antibody was stained with an FITC (green
fluorescence)-labeled antibody that specifically recognizes
human Fc. The nucleus was blue-stained with Hoechst33342 and
observed with a confocal microscope.
As shown in FIG. 22c, with the cytosol portion in which
red fluorescent tubulin was localized, green fluorescent
TuT4-WYW was merged in a fibrillar shape, but TuT4 was not
merged.
Example 24: Expression and Purification of Intact IgG
Format RAS-Targeting Cell-Penetrating Antibody and Analysis
of Affinities of K-RAS Mutants
In order to confirm whether the cytosol-penetrating
antibody can effectively target other intracytosolic proteins
in addition to cytoskeletal tubulin, an experiment was
performed.
FIG. 23a is a schematic view showing a process of
constructing an intact IgG-format RAS-targeting cytosol
penetrating antibody to be used to examine the activity of
mutants having improved endosomal escape ability.
For the purpose of expression of an intact IgG-format
Ras-targeting cytosol-penetrating antibody in animal cells,
DNA encoding a heavy chain the heavy-chain variable region
(RT11 VH) and heavy chain constant region (CH1-hinge-CH2-CH3)
binding specifically to GTP-bound K-RAS, which has a
secretion signal-encoding DNA fused to the 5' end, was cloned
into a pcDNA3.4 vector (Invitrogen) by use of NotI/HindIII as
described in Example 5.
Next, the animal expression vector encoding the cytosol
penetrating light chain or the cytosol-penetrating light
chain having increased endosomal escape ability, and the
constructed animal expression vector encoding the heavy chain
comprising the heavy-chain variable region that binds
specifically to GTP-bound K-RAS, were transiently co transfected into HEK293F protein-expressing cells. Next, purification of the intact IgG-format Ras-targeting cytosol penetrating antibody was performed in the same manner as described above.
FIG. 23b shows the results of 12% SDS-PAGE analysis
under reducing or non-reducing conditions after purification
of intact IgG-format RAS-targeting cytosol-penetrating
antibodies.
Specifically, under non-reducing conditions, a molecular
weight of about 150 kDa was observed, and under reducing
conditions, the heavy chain showed a molecular weight of 50
kDa, and the light chain showed a molecular weight of 25 kDa.
This suggests that the expressed purified intact IgG-format
Ras-targeting cytosol-penetrating antibody is present as a
monomer in a solution state and does not form a dimer or an
oligomer by a non-natural disulfide bond.
FIG. 23c shows the results of enzyme linked
immunosorbent assay performed to measure the affinities of
antibodies for GppNHp-bound K-RAS G12D and GDP-bound K-RAS
G12D, which are K-RAS mutants.
Specifically, GTP is very easily hydrolyzed, and hence
it is difficult to maintain the morphology of GTP-bound K-RAS
G12D. Thus, in order to enable K-RAS to have an activated
structure, like GTP, a GTP-bound K-RAS G12D antigen was
constructed using GppNHp which is a non-hydrolyzable GTP analogue. Each of a GppNHp-bound K-RAS G12D and a GDP-bound
K-RAS G12D, which are target molecules, was incubated in 96
well EIA/RIA plates (COSTAR Corning) at 370C for 1 hour,
followed by washing three times with 0.1% PBST (0.1
% Tween20, pH 7.4, 137 mM NaCl, 12mM phosphate, 2.7 mM KCl)
(SIGMA) for 10 minutes each time. Each well was incubated
with 5% PBSS (5% Skim milk, pH7.4, 137 mM NaCl, 12mM
phosphate, 2.7 mM KCl) (SIGMA) for 1 hour, and then washed
three times with 0.1% PBST for 10 minutes. Next, each well
was incubated with each of the IgG-format cytosol-penetrating
antibodies (TMab4, RT11, and RT11-WYW), and then washed three
times with 0.1% PBST for 10 minutes. As a marker antibody,
goat alkaline phosphatase-conjugated anti-human mAb (SIGMA)
was used. Each well was treated with pNPP (p-nitrophenyl
palmitate) (Sigma), and the absorbance at 405 nm was measured.
Affinities for the K-RAS mutants were analyzed, and as a
result, it was shown that there was little or no difference
in affinity between wild-type RT11 and mutant RT11-WYW. TMab4
used as a negative control did not bind, and all the clones
did not bind to the GDP-bound K-RASs.
Example 25: Confirmation of Specific Binding between
Intact IgG-Format Anti-RAS Cytotransmab and GTP-Bound K-RAS
in Cells
FIG. 24 shows the results of confocal microscopy
observation performed to examine whether intact IgG-format
RAS-targeting cytosol-penetrating antibodies would merge with
intracellular H-RAS G12V mutants.
Specifically, fibronectin (Sigma) was coated on a 24
well plate, and then 0.5 ml of a dilution of 2 x 104 NIH3T3
cells expressing mCherry (red fluorescence) H-RAS G12V was
added to each well and incubated at 370C in 5% C02 for 12
hours. Next, the cells were treated with each of 2 pM TMab4,
RT11 and RT11-WYW and incubated at 370C for 12 hours. Next,
the cells were stained in the same manner as described in
Example and were observed with a confocal microscope.
As shown in FIG. 24, with the inner cell membranes in
which red fluorescent activated RAS was located, green
fluorescent RT11 or RT11-WYW was merged, but TMab4 was not
merged.
From the above results, it was found that the intact
IgG-format Ras-targeting cytosol-penetrating antibody did
bind specifically to activated RAS in cells. The degree of
merging was higher in the order of RT11-WYW and RT11.
Example 26: Analysis of Properties of D1-M95 Inducing
Structural Change Depending on pH
For more detailed analysis of the properties of the 1st
amino acid aspartic acid (D) and 9 5 th amino acid methionine
(M) of the light-chain variable region (VL), which induce a
change in the properties of the cytosol-penetrating antibody
depending on pH, mutants were constructed by substituting the
1 't amino acid in the antibody backbone with each of glutamic
acid (E), alanine (A) and asparagine (N) present in the
germline sequences, and substituting the 9 5 th amino acid in
the CDR3 with each of all the 20 amino acids.
When the mutants were constructed, the 87th amino acid
tyrosine was substituted with phenylalanine in order to
increase the protein expression yield that decreased by the
improved endosomal escape motif. Phenylalanine is an amino
acid that can easily interact with the aromatic ring amino
acids and hydrophobic amino acids located in the backbone of
the heavy-chain variable region, thus enhancing the interface
between the light-chain variable region and the heavy-chain
variable region. The light-chain variable region, in which
the 8 7 th amino acid is substituted with phenylalanine and
which has the improved endosomal escape motif WYW at the 9 2 nd,
93 d and 9 4 th amino acid, was named 'hT4-3'. Thus, the cytosol
penetrating intact IgG-format antibody comprising the light
chain variable region was named 'TMab4-3'.
In the same manner as described in Example 1, each of
the mutants was cloned, expressed in HEK293F cell lines, and
purified.
FIG. 25b is a graph showing the results of
quantitatively comparing the number of cells that have taken
up trypan blue depending on pH by mutants constructed by
substituting 95th amino acid methionine of the light-chain
variable region (VL) of a cytosol-penetrating antibody, which
induce a structural change of the cytosol-penetrating
antibody at acidic pH 5.5, with various amino acids.
Specifically, 1 x 104 adherent cells (pgsD-677)
expressing no HSPG receptor were incubated. On the next day,
in the same manner as described in Example 5, the cells were
incubated with each of 1 pM TMab4-3, TMab4-3 D1A, TMab4-3 D1E
and TMab4-3 D1N in 200 pl of each of pH 7.4 buffer
(HBSS(Welgene), 50 mM HEPES pH 7.4)(for maintaining cytosolic
pH) and pH 5.5 buffer (HBSS(Welgene), 50 mM MES pH 5.5)(for
maintaining early endosomal pH) at 370C for 2 hours. After
careful washing with PBS, 200 pl of a mixture of 190 pl of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope. Next, after careful
washing with PBS, the cells were lysed by adding 50 pl of 1%
SDS (sodium dodecyl sulfate) to each well. The cells were
transferred to a 96-well plate, and the absorbance at 590 nm
was measured.
As a result, TMab4-3 DiE showed trypan blue uptake
similar to that of the wild-type, and the TMab4-3 DiA and
TMab4-3 DiN mutants showed reduced trypan blue uptake.
FIG. 25b is a graph showing the results of
quantitatively comparing the number of cells that have taken
up trypan blue depending on pH by mutants constructed by
substituting 95th amino acid methionine of the light-chain
variable region (VL) of a cytosol-penetrating antibody, which
induce a structural change of the cytosol-penetrating
antibody at acidic pH 5.5, with various amino acids.
Specifically, pgsD-677 cells were prepared in the same
manner as described in Example 26. Then, in the same manner
as in described Example 5, the cells were incubated with 1 pM
of each of TMab4-3 and nineteen TMab4-3 mutants in 200 pl of
each of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES pH 7.4
(cytosolic pH)) and pH 5.5 buffer (HBSS(Welgene), 50 mM MES
pH 5.5 (early endosomal pH)) at 370C for 2 hours. After
careful washing with PBS, 200 pl of a mixture of 190 pl of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope. Next, after careful
washing with PBS, the cells were lysed by adding 50 pl of 1%
SDS (sodium dodecyl sulfate) to each well.
The cells were transferred to a 96-well plate, and the
absorbance at 590 nm was measured. As a result, TMab4-3 M95L,
M951 and M95H showed trypan blue uptake similar to that of
TMab4-3, and TMab4-3 M95A, M95S, M95V, M95G and M95P mutants
showed reduced trypan blue uptake. In addition, TMab4-3 M59D
and M59E showed increased pH-dependent trypan blue uptake, but TMab4-3 M95K and M95R mutants showed increased trypan blue uptake at neutral pH.
Therefore, it was found that interaction between
hydrophobic amino acids having long side chains, negatively
charged amino acids, and histidine (H), is most effective for
inducing structural changes at acidic pH.
When the 9 5 th amino acid of the light-chain variable
region is composed of the hydrophobic amino acid methionine
(M), isoleucine (I) or leucine (L), or the negatively charged
amino acid aspartic acid (D) or glutamic acid (E), it is
expected that the carboxylic acid in the side chain of the
negatively charged amino acid will become hydrophobic by
partial protonation, and thus the 9 5 th amino acid will
hydrophobically interacts with aspartic acid (D) or glutamic
acid (E), which is the 1st amino acid of the light-chain
variable region or heavy-chain variable region (Du Z et al.,
2011; Di Russo et al., 2012).
In addition, when the 9 5 th amino acid of the light-chain
variable region is composed of histidine (H), it is expected
that as pH change from 7.4 to 5.5, the net charge of the
amino acid side chains will become positive, and the 95 th
amino acid will induce endosomal escape by electrostatic
interaction with aspartic acid (D) or glutamic acid (E),
which is the 1st amino acid of the light-chain variable region
or heavy-chain variable region.
Example 27: Design of Mutants Introduced with Amino
Acids That 'Induce Change in Properties in Response to pH'
In addition to D1-M95, the present inventors have
attempted to introduce amino acids capable of inducing
endosomal escape by changing their interaction depending on
pH.
Based on the results of structural modeling analysis,
the 9 0 th and 91st amino acids capable of interacting with the
1st amino acid aspartic acid (D) were selected as possible
candidates. To enable interaction under acidic pH conditions,
the 9 0 th amino acid was replaced with histidine (TMab4-3 Q90H),
and the 91st amino acid was substituted with histidine (TMab4
3 Y91H).
In addition, the 91st amino acid capable of additionally
interacting with the 2nd hydrophobic amino acid was
substituted with aspartic acid (TMab4-3 Y91D).
In addition, the 2nd amino acid was also substituted
with negatively charged glutamic acid (E) so that it could
interact with the 1st negatively charged amino acid, and the
9 0 th amino acid was substituted with leucine (L) (TMab4-3 L2E
Q90L) so that it could interact with the 9 5 th hydrophobic
amino acid. Furthermore, the 2 nd amino acid was also
substituted with glutamic acid (E) so that it could interact
with the 1st negatively charged amino acid, and the 97th amino acid was substituted with isoleucine (I) (TMab4-3 L2E T971) so that it could interact with the 9 5 th hydrophobic amino acid.
Table 9 below shows the names and sequences of the
mutants constructed using an overlap PCR technique.
[Table 9]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 SEQ ID hT4-3 VL DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYOQKPGKAPKLLIYW 60 70 80 90 100 NO:16 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 ELVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID D1E-M95L VL 60 70 80 90 100 NO:17 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYWYWLYTFGOGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID Y91 H VL 60 70 80 90 100 NO:18 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQHWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID Y91DVL 60 70 80 90 100 NO:19 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQDWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DEVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID L2E Q90L VL 60 70 80 90 100 NO:20 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQLYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DEVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID L2E T971 VL 60 70 80 90 100 NO:21 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYWYWMYIFGQGTKVEIKR
1 10 20 abcdef 30 40 50 hT4-3 SEQ ID Q90H M95A DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYOQKPGKAPKLLIYW 60 70 80 90 100 NO:22 VL ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQHYWYWAYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID Q90H VL 60 70 80 90 100 NO:23 ASTRESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQHYWYWMYTFGOGTKVEIKR
In the same manner as described in Example 1, each of
the mutants was cloned, expressed in HEK293F cell lines, and
purified.
Example 28: Confirmation of Improvement in Endosomal
Escape Ability of Mutants Introduced with Amino Acids That
'Induce Change in Properties in Response to pH'
FIG. 26a shows a graph showing quantitatively comparing
the number of cells that have taken up trypan blue depending
on pH by mutants designed for the purpose of 'inducing an
additional change in properties in response to pH'.
Specifically, cells were prepared in the same manner as
described in Example 26. Then, in the same manner as
described in Example 5, the cells were incubated with 0.5 or
1 pM of each of seven mutants (including TMab4-3, TMab4-3
D1E-M95L, etc.) in 200 pl of each of pH 7.4 buffer
(HBSS(Welgene), 50 mM HEPES pH 7.4(cytosolic pH)) and pH 5.5
buffer (HBSS(Welgene), 50 mM MES pH 5.5(early endosomal pH))
at 370C for 2 hours. After careful washing with PBS, 200 pl
of a mixture of 190 pl of PBS and 10 pl of trypan blue was
added to each well, and the cells were observed with a
microscope. Next, after careful washing with PBS, the cells
were lysed by adding 50 pl of 1% SDS (sodium dodecyl sulfate)
to each well. The cells were transferred to a 96-well plate,
and the absorbance at 590 nm was measured.
As a result, the TMab4-3 Q90H mutant showed higher
trypan blue uptake than TMab4-3 at 0.5 pM. Additionally,
using the TMab4-3 Q90H mutant showing a significant
difference from the wild-type, an experiment was performed.
FIG. 26b shows a bar graph showing the results of
observing the cytosolic localization of mutants designed for
the purpose of inducing an additional change in properties in
response to pH by confocal microscopy using calcein and
quantifying the calcein fluorescence of the confocal
micrographs.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2, and the cells were
incubated with 0.5 pM and 1 pM of each of TMab4-3 and TMab4-3
Q90H at 370C for 6 hours. After 4 hours, each well containing
PBS or the antibody was treated with 150 pM calcein and
incubated at 370C for 2 hours. The cells were washed with PBS
and weakly acidic solution in the same manner as described in
Example 2, and then fixed. The nucleus was blue-stained with
Hoechst33342 and observed with a confocal microscope.
As a result, in the cells treated with TMab4-3 Q90H,
green calcein fluorescence localized in the cytosol increased
compared to that in the cells treated with TMab4-3. Therefore,
it was confirmed that, in addition to the 9 5 th amino acid of
the light-chain variable region of the cytosol-penetrating
antibody, the 9 0 th amino acid interacted with the 1 't amino acid and induced endosomal escape by a pH-dependent change in the interaction.
Table 10 below the CDR3 sequence of the light-chain
variable region of the mutant having an increased ability to
escape from endosomes by inducing an additional change in the
properties depending on pH.
[Table 10]
Name of
Light SEQID Chain CDR3 Sequence NO: Variable Region
Kabat No.
hT4 3 SEQ ID Q90H VL Q H Y W Y WM Y T _____ ____ ____ NO:24
Example 29: Investigation of Endosomal Escape Ability at
Varying Lengths of CDR3 of Light-Chain Variable Region
85% or more of the CDR3 of the light-chain variable
region consists of 9 amino acids. Depending on the number and
composition of amino acids, the CDR3 loop structure varies.
In the present disclosure, to analyze how the endosomal
escape ability changes depending on the number and composition of amino acids, mutants comprising a CDR3 consisting of 8, 10 or 11 amino acids were constructed.
Table 11 below shows the names and sequences of the
mutants constructed using an overlap PCR technique.
[Table 11]
Nameof Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYOOKPGKAPKLLIYW SEQ lID L8-1 VL 60 70 80 90 100 NO:25 ASTRFSGVPSRFSGSGSGTDFTLTISSLPEDFATYFCQQYWYWMTFGDGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYOOKPGKAPKLLIYW SEQ ID L8-2 VL 60 70 80 90 100 NO:26 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYFCQQWYWMPTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID L10-1 VL 60 70 80 90 100 NO:27 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYFCQQYWYWPMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYOOKPGKAPKLLIYW SEQ ID L10-2 VL 60 70 80 90 100 NO:28 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYWYWLMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQOKPOKAPKLLIYW SEQ lID L10-3 VL 60 70 80 90 100 NO:29 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYYCQQYWYWYMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQOKPGKAPKLLIYW SEQ ID 111-1 VL 60 70 80 90 100 NO:30 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYYCQQYWYWLYMYTF3QGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID 11-2 VL 60 70 80 90 100 NO:31 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYYCQQYPWYWPMYTFGQGTKVEIKR
In the same manner as described in Example 1, each of
the mutants was cloned, expressed in HEK293F cell lines, and
purified.
FIG. 27 is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
obtained by changing the amino acid number of the CDR3 of the
light-chain variable region of a cytosol-penetrating antibody.
Specifically, cells were prepared in the same manner as
described in Example 26. Then, in the same manner as
described in Example 5, the cells were incubated with 1 pM of
each of seven mutants (including TMab4-3, TMab4-3 L8-1, etc.)
in 200 pl of each of pH 7.4 buffer (HBSS(Welgene), 50 mM
HEPES pH 7.4(cytosolic pH)) and pH 5.5 buffer (HBSS(Welgene),
50 mM MES pH 5.5(early endosomal pH)) at 370C for 2 hours.
After careful washing with PBS, 200 pl of a mixture of 190 pl
of PBS and 10 pl of trypan blue was added to each well, and
the cells were observed with a microscope. Next, after
careful washing with PBS, the cells were lysed by adding 50
pl of 1% SDS (sodium dodecyl sulfate) to each well. The cells
were transferred to a 96-well plate, and the absorbance at
590 nm was measured.
As a result, in comparison with TMab4-3, the mutants
showed increased trypan blue uptake at neutral pH as the
number of amino acids increased. The reason is believed to
be as follows. As the number of amino acids increases, the overall CDR3 loop structure is stretched, and the endosomal escape motif WYW which binds to the cell membrane in order to escape from endosomes is exposed to the outside, and thus trypan blue uptake increases even at neutral pH.
In addition, in the experimental results, it was
confirmed that even when the distance between the 9 5 th amino
acid, which induces endosomal escape by a pH-dependent change
in interaction, and the 9 2 nd, 9 3 rd or 9 4 th amino acid, which
influences endosomal escape by binding to the phospholipid,
increases, the properties of the endosomal escape motif are
maintained.
Example 30: Logic of Possibility of Imparting Improved
Endosomal Escape Motif to Light-Chain Variable Region of
Conventional Therapeutic Antibody
Currently commercially available therapeutic antibodies
include many kinds of monoclonal antibodies that target cell
surface receptors, particularly cell surface receptors that
undergo endocytosis. However, these conventional antibodies
have disadvantages in that their binding to antigen is not
broken after endocytosis, and these antibodies do not
localize in the cytosol and are released out of the cells
because they have no endosomal escape ability. Thus, if
endosomal escape ability can be imparted to these receptor
targeting antibodies that undergo endocytosis, there is an advantage in that these antibodies can be used in a wider range of applications.
In addition, the use of the stable backbone of
commercially available therapeutic antibodies can increase
the overall expression yield, and when the affinity of these
antibodies for HSPG, a non-tumor-specific receptor, is
eliminated, tumor tissue specificity can be imparted to these
antibodies.
To impart an improved endosomal escape motif, the
sequences of the light-chain variable regions of receptor
targeting antibodies that undergo endocytosis were compared
with the sequence of the light-chain variable region of the
cytosol-penetrating antibody. As a result, candidate light
chain variable regions were selected, which have a negatively
charged amino acid as the 1 't amino acid and in which
backbone amino acids that can influence the CDR3 loop
structure are the same as those of the cytosol-penetrating
antibody.
Mutants were constructed by the CDR3 sequences of the
candidate light-chain variable regions with the CDR3 sequence
of the cytosol-penetrating antibody.
Table 12 shows the names and sequences of the mutants
constructed using a genesis synthesis technique.
[Table 12]
Name of Sequence SEQ ID NO: Variable Region 1 10 20 abcd 40 50 Necitumumab- EIVMTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYD SEQ ID WYW VL 60 70 80 90 100 NO:32 ASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYFCQQYWYWMYTFGQGTKAEIKR 1 10 20 abcd 40 50 Panitumumab- DIQMTOSPSSLSASVGDRVTITCOASQDISNYLNWYQQKPGKAPKLLIYD SEQ ID WYW VL 60 70 80 90 100 NO:33 ASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQQYWYWMYTFGGGTKVEIKR 1 10 20 abcdef 30 40 50 Lumretuzumab- DIVMTQSPDSLAVSLGERATINCKSSQSVLNSGNQKNYLTWYQQKPGQAPKLLIYW SEQ ID WYW VL 60 70 80 90 100 NO:34 ASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYFCQQYWYWMYTFGQGTKLEIKR 1 10 20 abcdef 30 40 50 Nimotuzumab- DIQMTQSPSSLSASVGDRVT ITCRSSQNIVHSNGNTYLDWYQQTPGKAPKLLIYK SEQ ID WYW VL 60 70 80 90 100 N0:35 VSNRFSGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQQYWYWMYTFGQGTKLQITR 1 10 20 abcd 40 50 Emibetuzumab- DIQMTOSPSSLSASVGDRVTITCSVSSSVSSIYLHWYQQKPGKAPKLLIYS SEQ ID WYW VL 60 70 80 90 100 NO:36 TSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQYWYWMYTFGGGTKVEIKR 1 10 20 abcd 40 50 Pertuzumab- DIQMTOSPSSLSASVGDRVTITCKASQDVSIGVAWYQQKPGKAPKLLIYS SEQ ID WYW VL 60 70 80 90 100 NO:37 ASYRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQYWYWMYTFGQGTKVEIKR
FIG. 28a shows a process of constructing an intact IgG
format RAS-targeting cytosol-penetrating antibody in which an
improved endosomal escape motif is introduced into the light
chain variable region of a conventional therapeutic antibody.
As shown in FIG. 28a, in the same manner as described in
Example 1, cloning of the light-chain variable region was
performed, and the resulting animal expression vector and he
animal expression vector encoding the heavy chain comprising
the heavy-chain variable region that binds specifically to
GTP-bound K-RAS were transiently co-transfected into HEK293F
protein-expressing cells. Next, purification of the resulting
intact IgG-format anti-RAS cytotransmab was performed in the
same manner as described in Example 1.
Example 31: Confirmation of Possibility of Imparting
Improved Endosomal Escape Motif to Light-Chain Variable
Region of Conventional Therapeutic Antibody
FIG. 28b shows the results of fluorescence microscopic
observation performed to examine whether the HSPG binding
affinity and cytosol-penetrating ability of an intact IgG
format RAS-targeting cytosol-penetrating antibody in which an
improved endosomal escape motif is introduced into the light
chain variable region of a conventional therapeutic antibody
would be reduced or eliminated.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. When the cells were
stabilized, the cells were incubated with PBS or each of 1 pM
RT11-3, RT11-Neci-WYW, RT11-Nimo-WYW, RT11-Pani-WYW, RT11
Pert-WYW, RT11-Lumr-WYW and RT11-Emib-WYW at 370C for 6 hours.
The cells were washed with PBS and weakly acidic
solution in the same manner as described in Example 2, and
then subjected to cell fixation, cell perforation and
blocking processes. Each of the antibodies was stained with
an FITC (green fluorescence)-labeled antibody that specifically recognizes human Fc. The nucleus was blue stained with Hoechst33342 and observed with a confocal microscope. As a result, in all the six intact IgG-format
RAS-targeting cytosol-penetrating antibodies comprising the
monoclonal antibody backbone imparted with the improved
endosomal escape motif, no fluorescence was observed.
FIG. 28c shows a graph quantitatively comparing the
number of cells that taken up trypan blue at acidic pH by an
intact IgG-format RAS-targeting cytosol-penetrating antibody
in which an improved endosomal escape motif is introduced
into the light-chain variable region of a conventional
therapeutic antibody.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of 1 pM RT11-3, RT11-Neci-WYW, RT11-Nimo
WYW, RT11-Pani-WYW, RT11-Pert-WYW, RT11-Lumr-WYW, and RT11
Emib-WYW in 200 pl of pH 7.4 buffer (HBSS(Welgene), 50 mM
HEPES pH 7.4(cytosolic pH)) and pH 5.5 buffer(HBSS(Welgene),
50 mM MES pH 5.5(early endosomal pH)) at 370C for 2 hours.
After careful washing with PBS, 200 pl of a mixture of 190 pl
of PBS and 10 pl of trypan blue was added to each well, and
the cells were observed with a microscope.
The number of cells showing trypan blue uptake was
counted and expressed as percentage relative to the total
number of cells. A total of 400 or more cells were counted, and the mean values are graphically shown. As a result, except for RT11-Pert, the five intact IgG-format RAS targeting cytosol-penetrating antibodies comprising the therapeutic antibody backbone imparted with the improved endosomal escape motif showed trypan blue uptake similar to that of RT11-3.
Example 32: Confirmation of Maintenance of Specific
Binding between Intact IgG-Format RAS-Targeting Cytosol
Penetrating Antibody Comprising Therapeutic Antibody Backbone
Imparted with Improved Endosomal Escape Motif and GTP-Bound
K-RAS
FIG. 29a shows the results of ELISA performed to measure
the affinities of an intact IgG-format RAS-targeting cytosol
penetrating antibody, in which an improved endosomal escape
motif is introduced into the light-chain variable region of a
conventional therapeutic antibody, for GppNHp-bound K-RAS
G12D and GDP-bound K-RAS G12D, which are K-RAS mutants.
Specifically, each of a GppNHp-bound K-RAS G12D and a
GDP-bound K-RAS G12D, which are target molecules, was
incubated in 96-well EIA/RIA plates (COSTAR Corning) at 37°C
for 1 hour, followed by washing three times with 0.1% PBST
(0.1 % Tween20, pH 7.4, 137 mM NaCl, 12mM phosphate, 2.7 mM
KCl) (SIGMA) for 10 minutes. Each well was incubated with 5%
PBSS (5% Skim milk, pH7.4, 137 mM NaCl, 12mM phosphate, 2.7 mM KCl) (SIGMA) for 1 hour, and then washed three times with
0.1% PBST for 10 minutes. Next, each well was incubated with
each of the IgG-format RAS-targeting cytosol-penetrating
antibodies (RT11-3, RT11-Neci-WYW, RT11-Nimo-WYW, RT11-Pani
WYW, RT11-Pert-WYW, RT11-Lumr-WYW, RT11-Emib-WYW), and then
washed three times with 0.1% PBST for 10 minutes. As a marker
antibody, goat alkaline phosphatase-conjugated anti-human mAb
(SIGMA) was used. Each well was treated with pNPP (p
nitrophenyl palmitate) (Sigma), and the absorbance at 405 nm
was measured.
Affinities for the K-RAS mutants were analyzed. As a
result, except for RT11-Nimo, the five intact IgG-format RAS
targeting cytosol-penetrating antibodies comprising the
therapeutic antibody backbone imparted with the endosomal
escape motif showed no difference in affinity from RT11-3,
and all the clones did not bind to the GDP-bound K-RASs used
as negative controls.
FIG. 29b shows a schematic view showing a process of
constructing an intact IgG-format RAS-targeting cytosol
penetrating antibody in which an improved endosomal escape
motif is introduced into the RGD10 peptide-fused light-chain
variable region of a conventional therapeutic antibody.
Because the intact IgG-format RAS-targeting cytosol
penetrating antibody imparted with the improved endosomal
escape motif showed no cell-penetrating ability, an RGD10 peptide specific for integrin avB3 which is overexpressed in neovascular cells and various tumors was genetically fused to the N-terminus of the light chain by two GGGGS linkers. The
RGD10 peptide has an affinity similar to that of a RGD4C
peptide, but has characteristics in that it has a single
disulfide bond formed by two cysteine residues and can be
genetically fused.
In addition, based on the results of analysis of
expression yield, endosomal escape ability, and affinity for
Ras, the RGD10 peptide was fused to the N-terminus of the
light-chain variable region of each of RT11-Pani-WYW and
RT11-Neci-WYW which are excellent candidate antibodies.
FIG. 29c shows the results of confocal microscopy
performed to examine whether an intact IgG-format RAS
targeting cytosol-penetrating antibody in which an improved
endosomal escape motif is introduced into the RGD10 peptide
fused light-chain variable region of a conventional
therapeutic antibody would merge with intracellular activated
H-RAS G12V mutants.
Specifically, 0.5 ml of a dilution of 2 x 104 human
colorectal cancer SW480 cells having a K-RAS G12V mutation
were added to each of a 24-well plate and incubated with each
of 1 pM RT11-i3, RT11-i-Neci-WYW and RT11-i-Pani-WYW at 370C
in 5% C02 for 12 hours. Next, in the same manner as described
in Example 2, antibody labeling and nucleus staining were performed, and the cells were treated with a Ras-labeled antibody at 370C for 1 hour. Then, the cells were secondary antibody and observed with a confocal microscope.
With the inner cell membrane in which the red
fluorescent activated RAS was located, green fluorescent
RT11-i3, RT11-i-Neci-WYW and RT11-i-Pani-WYW were merged.
The above experimental results indicate that the intact
IgG-format RAS-targeting cytosol-penetrating antibody
introduced with the improved endosomal escape motif binds
specifically to activated RAS in cells.
Example 33: Logic of Possibility of Imparting Improved
Endosomal Escape Motif to CDR of Heavy-Chain Variable Region
The heavy-chain variable region and the light-chain
variable region are structurally common in that they have a
beta-sheet structure as a backbone and are composed of three
CDR having a loop structure. Thus, it was considered that the
endosomal escape motif of the light-variable variable region,
which induces endosomal escape by a pH-dependent change in
interaction, can also be applied to the heavy-chain variable
region.
Whether this phenomenon is reproducible in the heavy
chain variable region was analyzed through the sequence and
three-dimensional structure of the heavy-chain variable
region. As a result, the endosomal escape motif could be grafted into the CDR3 at a distance that can interact with the 1 't amino acid glutamic acid (E) of the heavy-chain variable region.
The number of amino acids in the CDR3 of the wild-type
heavy-chain variable region is 11, and the center of the loop
structure of the CDR3 is significantly exposed to the surface.
For this reason, it is considered that the pH-dependent
phenomenon occurring in the light-chain variable region
hardly occurs. For this reason, the amino acid number of the
CDR3 was reduced to 7 or 8 while maintaining a portion of the
sequence.
In addition, it was considered that an amino acid
capable of interacting with the 1 't amino acid of the heavy
chain variable region at early endosomal pH is the 1 0 2 nd amino
acid of the heavy-chain variable region and this amino acid
is located at a suitable distance. Thus, this amino acid was
substituted with leucine (L).
Mutants were constructed by introducing the improved
endosomal escape motif into the CDR3 of the heavy-chain
variable region.
Tables 13, 14 and 15 show the heavy-chain variable
region sequences obtained by grafting the designed endosomal
escape motif into the heavy-chain variable region. Table 13
below shows the full-length sequences of the human antibody
light-chain variable regions according to the Kabat numbering system, and Tables 14 and 15 below show the CDR1 and CDR2 sequences or CDR3 sequences of the antibody sequences shown in Table 13.
[Table 13]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 30 40 50 SEQ ID HTO VH EVQLVESGGGLVQPGGSLRLSCAASGYTFTSYVMHWVRAPGKGLEWVSAINPYNDGNYY 60 70 80 90 110 N0:38 ADSVKGRFTISRDNSRKTLYLMNSLRAEDTAVYYCARGAYKRGYAMDYWGOGTTVTVSS 1 10 20 30 40 50 EVQLVESGGGLVQPGGSLRLSCAASYTFTSYVMHWVRQAPGKGLEWVSAINPYNDGNYY SEQ ID HTO-01 VH 60 70 80 90 110 NO:39 ADSVKGRFTISRDNSRKTLYLMNSLRAEDTAVYYCARGWYWMDLWGDGTTVTVSS 1 10 20 30 40 50 EVQLVESGGGLV0PGGSLRLSCAASGYTFTSYVMHWVROAPGKGLEWVSAINPYNDGNYY SEQ ID HTO-02 VH 60 70 80 90 110 N0:40 ADSVKGRFTISRDNSRKTLYLOMNSLRAEDTAVYYCARGWYWFDLWGQGTTVTVSS 1 10 20 30 40 50 SEQ ID HTO-03 VH EVQLVESGGGLVOPGGSLRLSCAASGYTFTSYVMHWVRQAPGKGLEWVSAINPYNDGNYY 60 70 80 90 110 N0:41 ADSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARGWYWGFDLWGGTTVTVSS 1 10 20 30 40 50 SEQ ID HTO-04 VH EVQLVESGGGLVOPGGSLRLSCAASGYTFTSYVMHWVRQAPGKGLEWVSAINPYNDGNYY 60 70 80 90 110 N0:42 ADSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARYWYWMDLWGQGTTVTVSS
[Table 14]
CDR1 CDR2 Sequence ___ ___ __ Sequence _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
Kabat No. 4-n" rn'Mt2m o L-n 14) "I d)n n LOnl 10 I) 1) w W tD CO
Heavy Chain Variable S Y V M H A I N P Y N D G N Y Y A D S V K G Region
SEQ ID NO: SEQID SEQ ID NO:44 I NO:43
[Table 15]
Name of Heavy SEQ ID Chain CDR3 Sequence NO:
Variable Region
Kabat No. mm O)O O2 o08.
G A R K R G Y A M D Y SEQ ID 10HTO VH NO.45 SEQ ID HTO-01 VH G W Y W M - - - - D L NO:46 SEQ ID HTO-02 VH G W Y W F - - - - D L NO:47 SEQ ID HTO-03 VH GWYWG F - - - D L NO:48 SEQ ID HTO-04VH Y W Y W M - - - - D L I NO:49
FIG. 30a shows a process of constructing a cytosol
penetrating antibody having a light-chain variable region from which endosomal escape ability is removed and a heavy chain variable region into which an improved endosomal escape motif is introduced.
In order to evaluate the endosomal escape ability of the
heavy-chain variable region introduced with the improved
endosomal escape motif, the 9 2nd to 9 4 th amino acids (WYW) of
the light-chain variable region, which are involved in
endosomal escape, AAA (three consecutive alanines), thereby
removing the function thereof. In the same manner as
described in Example 1, cloning of the heavy-chain variable
region was performed, and the resulting heavy chain together
with the light chain comprising the light-chain variable
region from which the endosomal escape motif has been removed
was expressed in HEK293F cell lines and purified.
In order to more clearly name the cytosol-penetrating
antibody comprising the heavy-chain variable region
introduced with the improved endosomal escape motif, TMab4 is
abbreviated as CT. In other words, TMab4-AAA is CT-AAA.
Example 34: Confirmation of Possibility of Imparting
Improved Endosomal Escape Motif to CDR of Heavy-Chain
Variable Region
FIG. 30b shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by a cytosol-penetrating antibody having a light-chain variable region from which endosomal escape ability is removed and a heavy-chain variable region into which an improved endosomal escape motif is introduced.
Specifically, as shown in FIG. 30b, Ramos cells were
attached to plates in the same manner as described in Example
5. Then, the cells were incubated with each of 1 pM TMab4-WYW,
TMab4-AAA, CT01-AAA, CT02-AAA, CT03-AAA and CT04-AAA in 200
pl of each of pH 7.4 buffer(HBSS(Welgene), 50 mM HEPES pH
7.4(cytosolic pH)) and pH 5.5 buffer (HBSS(Welgene), 50 mM
MES pH 5.5(early endosomal pH)) at 370C for 2 hours. After
careful washing with PBS, 200 pl of a mixture of 190 pl of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope. The number of cells
showing trypan blue uptake was counted and expressed as
percentage relative to the total number of cells. A total of
400 or more cells were counted, and the mean values are
graphically shown. It was observed that the CT01-AAA, CT02
AAA, CT03-AAA and CTO4-AAA all showed trypan blue uptake
equal to about half of TMab4-3. However, it was shown that
the CTO4-AAA mutant showed trypan blue uptake even at neutral
pH.
FIG. 30c shows the results of confocal microscopy
performed to observe the GFP fluorescence by enhanced split
GFP complementation of a GFP11-SBP2-fused cytosol-penetrating
antibody having a light-chain variable region from which endosomal escape ability has been removed, and a heavy-chain variable region into which an improved endosomal escape motif has been introduced.
Specifically, transformed HeLa cells stably expressing
SA-GFP1-10 were prepared in the same manner as described in
Example 2. When the cells were stabilized, the cells were
incubated with PBS or each of 1.6 pM CT01-AAA-GFP11-SBP2,
CT02-AAA-GFP11-SBP2, CT03-AAA-GFP11-SBP2 and CT04-AAA-GFP11
SBP2 at 370C for 6 hours. The cells were washed with PBS and
weakly acidic solution in the same manner as described in
Example 2, and then fixed. The nucleus was blue-stained with
Hoechst33342 and observed with a confocal microscope. As a
result, green fluorescence was observed in the cells with
CT01-AAA-GFP11-SBP2, CT02-AAA-GFP11-SBP2, CT03-AAA-GFP11-SBP2
or CT04-AAA-GFP11-SBP2.
FIG. 30d shows the results of confocal microscopy
performed using calcein in order to observe the cytosolic
localization of a cytosol-penetrating antibody having a
light-chain variable region from which endosomal escape
ability has been removed and a heavy-chain variable region
into which an improved endosomal escape motif has been
introduced.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. The cells were incubated
with each of 0.2 pM and 1 pM CT01-AAA, CT02-AAA and CT03-AAA at 370C for 6 hours. After 4 hours, each well containing PBS or the antibody was treated with 150 pM calcein and incubated at 370C for 2 hours. In the same manner as descried in
Example 2, the cells were washed with PBS and weakly acidic
solution, and then fixed. The nucleus was blue-stained with
Hoechst33342 and observed with a confocal microscope. In the
cells treated with CT01-AAA or CT02-AAA, green calcein
fluorescence localized in the cytosol was similar to that in
the cells treated with TMab4. However, in the cells treated
with CT03-AAA, green calcein fluorescence localized in the
cytosol was weaker than that in the cells treated with CT.
Therefore, it was confirmed that even when the improved
endosomal escape motif is imparted to the heavy-chain
variable region, the antibody can escape from endosomes and
finally localize in the cytosol.
Example 35: Analysis of Properties of E1-L102 of Heavy
Chain Variable Region That Induces Structural Change
Depending on pH
For more detailed analysis of the 1st amino acid
glutamic acid and 102nd amino acid leucine of the heavy-chain
variable region, which induce a structural change depending
on pH, mutants were constructed by substituting the 1st amino
acid in the antibody backbone with each of aspartic acid,
alanine and glutamine present in germline sequences, and substituting the 1 0 2nd amino acid in the CDR3 with each of 12 amino acids of the light-chain variable region, which showed trypan blue uptake at neutral or acidic pH. In the same manner as described in Example, each of the mutants was cloned, expressed in HEK293F cell lines, and purified.
FIG. 31a is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
constructed by substituting the 1 't amino acid glutamic acid
of the heavy-chain variable region (VH) of a cytosol
penetrating antibody, which is involved in induction of a
structural change in properties of the antibody at acidic pH
5.5, with various amino acids.
Specifically, 1x10 4 pgsD-677 cells were incubated in 24
well plates in the same manner as described in Example 26. On
the next day, in the same manner as described in Example 5,
the cells were incubated with each of 1 pM CT01-AAA, CT01-AAA
ElA, CT01-AAA ElD and CT01-AAA E1Q in 200 pl of each of pH
7.4 buffer (HBSS(Welgene), 50 mM HEPES pH 7.4(cytosolic pH))
and pH 5.5 buffer(HBSS(Welgene), 50 mM MES pH 5.5(early
endosomal pH)) at 37°C for 2 hours. After careful washing
with PBS, 200 pl of a mixture of 190 pl of PBS and 10 pl of
trypan blue was added to each well, and the cells were
observed with a microscope. Next, after careful washing with
PBS, the cells were lysed by adding 50 pl of 1% SDS (sodium
dodecyl sulfate) to each well. The cells were transferred to a 96-well plate, and the absorbance at 590 nm was measured.
As a result, CT01-AAA ElD showed trypan blue uptake similar
to that of the wild type, and the CT01-AAA ElA and CT01-AAA
E1Q mutants showed reduced trypan blue uptake compared to
that of the wild type.
FIG. 31a is a graph quantitatively comparing the number
of cells that taken up trypan blue depending on pH by mutants
constructed by substituting 1 0 2 "d amino acid leucine of the
heavy-chain variable region (VH) of a cytosol-penetrating
antibody, which is involved in induction of a structural
change of the antibody at acidic pH 5.5, with various amino
acids.
Specifically, pgsD-677 cells were prepared in the same
manner as described in Example 26. Then, in the same manner
as in described Example 5, the cells were incubated with 1 pM
of each of CT01-AAA and nineteen CT01-AAA L102X mutants in
200 pl of each of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES
pH 7.4 (cytosolic pH)) and pH 5.5 buffer (HBSS(Welgene), 50
mM MES pH 5.5 (early endosomal pH)) at 370C for 2 hours.
After careful washing with PBS, 200 pl of a mixture of 190 pl
of PBS and 10 pl of trypan blue was added to each well, and
the cells were observed with a microscope. Next, after
careful washing with PBS, the cells were lysed by adding 50
pl of 1% SDS (sodium dodecyl sulfate) to each well. The cells
were transferred to a 96-well plate, and the absorbance at
590 nm was measured. As a result, compared to CT01-AAA, CT01
AAA L1021, L102M, and L102H showed trypan blue uptake similar
to that of the wild type, and the CT01-AAA L102K and L102R
mutants showed increased trypan blue uptake at neutral pH.
This suggests that interaction between hydrophobic amino
acids having long side chains, negatively charged amino acids,
and histidine (H), is most effective so that the 1 0 2 nd amino
acid of the heavy-chain variable region induces endosomal can
escape through a change in interaction at early endosomal pH
5.5, like the 9 5 th amino acid of the light-chain variable
region.
Example 36: Construction of Endosomal Escape Motif
Mutants Having Three Tryptophan Residues
In order to improve the endosomal escape ability of the
endosomal escape motif having two tryptophan residues, an
endosomal escape motif having a total of three tryptophan
residues was constructed by substituting the 9 2nd to 9 4 th amino
acids with tryptophan.
Tables 16 and 17 show light-chain variable region mutant
sequences obtained by introducing the endosomal escape motif
having three tryptophan residues. Specifically, Table 16
below shows the full-length sequence of the human antibody
light-chain variable region according to the Kabat numbering system, and Table 17 below the CDR3 sequence of the antibody sequence shown in Table 16.
[Table 16]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 abcdef 30 40 50 SEQ ID hT4-3VL DLVMTOSPSSLSASVGDRVTITCKSSOSLFNSRTRKNYLAWYQQKPGKAPKLLIYW 60 70 80 90 100 No:16 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYFCQOYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 hT4-3 DLVMTQSPSSLSASVGDRVTITCKSSQSLFNSRTRKNYLAWYQQKPGKAPKLLIYW SEQ ID WWW VL 60 70 80 90 100 N0:50 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYFCQQYVMYTFGQGTKVEIKR
[Table 17]
Name of
Light SEQID Chain CDR3 Sequence NO: Variable Region
Kabat No. hT43 SEQ ID WWWVL QQYWWWMYT _____ ____ ____ NO:51
Tables 18 and 19 show heavy-chain variable region mutant
sequences obtained by introducing the endosomal escape motif
having three tryptophan residues. Specifically, Table 18
below shows the full-length sequence of the human antibody light-chain variable region according to the Kabat numbering system, and Table 19 below the CDR3 sequence of the antibody sequence shown in Table 18.
[Table 18]
Name of Variable Sequence SEQ ID NO: Region 1 10 20 30 40 50 EVQLVESGGGLVOPGGSLRLSCAASGYTFTSYVMHWVRQAPGKGLEWVSAINPYNDGNYY SEQ ID HTO-01 VH 60 70 80 90 110 N0:38 ADSVKGRFTISRDNSRKTLYLOMNSLRAEDTAVYYCARGWYWMDLWGDGTTVTVSS 1 10 20 30 40 50 HTO-01 EVOLVESGGGLVOPGGSLRLSCAASGYTFTSYVMHWVRQAPGKGLEWVSAINPYNDGNYY SEQ ID WWW VH 60 70 80 90 110 N0:52 ADSVKGRFTISRDNSRKTLYLQMNSLRAEDTAVYYCARGWMDLWGQGTTVTVSS
[Table 19]
Name of Heavy SEQ ID Chain CDR3 Sequence NO:
Variable Region
Kabat No. c
HTO-01 SEQ ID WWW VH GWWWM- - - - DL NO:53
In order to evaluate the endosomal escape ability of the
heavy-chain variable region or heavy-chain variable region
comprising the endosomal escape motif having three tryptophan
residues, this heavy-chain variable region or heavy-chain variable region and the heavy-chain variable region or light variable region that does not comprise the endosomal escape motif were expressed together in HEK293F cell lines in the same manner as described in Example 1, and purified.
Example 37: Confirmation of Improvement in Endosomal
Escape Ability of Intact IgG-Format Cytosol-Penetrating
Antibody Comprising the Heavy-Chain Variable Region or Light
Chain Variable Region Introduced with Endosomal Escape Motif
Having Two or Three Tryptophan Residues
As one strategy for improving the endosomal escape
ability, the endosomal escape motif was imparted to both the
heavy-chain variable region and the light-chain variable
region. Thus, a single intact IgG-format cytosol-penetrating
antibody includes a total of four endosomal escape motifs.
The heavy-chain variable region and the light-chain
variable region, which comprise the endosomal escape motif
having two or three tryptophan motifs, were expressed
together in HEK293F cell lines in the same manner as
described 1 above, and purified.
FIG. 32a shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by intact IgG-format cytosol-penetrating antibodies having
a light-chain variable region and/or a heavy-chain variable region introduced with an endosomal escape motif having three tryptophan residues.
Specifically, pgsD-677 cells were prepared in the same
manner as described in Example 26. Then, in the same manner
as in described Example 5, the cells were incubated with 0.5
or 1 pM of each of CT-3, CT-3_WWW, CT01-AAA, CT01_WWW-AAA,
and CT01-3, and CT01_WWW-3_WWW in 200 pl of each of pH 7.4
buffer (HBSS(Welgene), 50 mM HEPES pH 7.4 (cytosolic pH)) and
pH 5.5 buffer (HBSS(Welgene), 50 mM MES pH 5.5 (early
endosomal pH)) at 370C for 2 hours. After careful washing
with PBS, 200 pl of a mixture of 190 pl of PBS and 10 pl of
trypan blue was added to each well, and the cells were
observed with a microscope. Next, after careful washing with
PBS, the cells were lysed by adding 50 pl of 1% SDS (sodium
dodecyl sulfate) to each well. The cells were transferred to
a 96-well plate, and the absorbance at 590 nm was measured.
As a result, CT-3_WWW, CT01_WWW-AAA and CT01_WWW-3_WWW
showed significantly increased trypan blue uptake, compared
to the CT-3, CT01-AAA and CT01-3 comprising the existing
endosomal escape motif. In addition, compared to CT-3 and
CT01-AAA, the CT01-3 and CT01_WWW-3_WWW comprising the
endosomal escape motif in both the heavy-chain and light
chain variable regions showed higher trypan blue uptake.
FIG. 32b shows a bar graph showing the results of
observing the cytosolic localization of intact IgG-format cytosol-penetrating antibodies having a light-chain variable region and/or a heavy-chain variable region introduced with an endosomal escape motif having three tryptophan residues by confocal microscopy using calcein and quantifying the calcein fluorescence of the confocal micrographs.
Specifically, HeLa cells were prepared in the same
manner as described in Example 2. The cells were incubated
with 0.25, 0.5 and 1 pM of each of CT-3, CT-3_WWW, CT01-AAA,
CT01_WWW-AAA, CT01-3, and CT01_WWW-3_WWW at 370C for 6 hours.
After 4 hours, each well containing PBS or the antibody was
treated with 150 pM calcein and incubated at 370C for 2 hours.
In the same manner as described in Example 2The cells were
washed with PBS and weakly acidic solution and fixed. The
nucleus was blue-stained with Hoechst33342 and observed with
a confocal microscope.
As a result, compared to the cells treated with the CT-3,
CT01-AAA or CT01-3 comprising the existing endosomal escape
motif, the cells treated with CT-3_WWW, CT01_WWW-AAA or
CT01_WWW-3_WWW showed stronger green calcein fluorescence
that localized in the cytosol. In addition, compared to the
cells treated with CT-3 or CT01-AAA, the cells treated with
the CT01-3 or CT01_WWW-3_WWW comprising the endosomal escape
motif in both the heavy-chain and light-chain variable
regions showed stronger green calcein fluorescence that
localized in the cytosol.
It was confirmed that the endosomal escape motif having
three tryptophan motifs has improved endosomal escape motif
compared to the existing endosomal escape motif, and even
when the endosomal escape motif was imparted to the heavy
chain variable region and the light-chain variable region,
the endosomal escape ability was improved.
Example 38: Confirmation of Improvement in Endosomal
Escape Ability of Intact IgG-Format Cytosol-Penetrating
Antibody Comprising Heavy-Chain Variable Region Introduced
with Improved Endosomal Escape Motif and Light-Chain Variable
Region Having Therapeutic Antibody Backbone Imparted with
Improved Endosomal Escape Ability
In order to confirm that the endosomal escape ability is
improved when the endosomal escape motif is imparted to both
the heavy-chain variable region and the light-chain variable
region, the heavy-chain variable region introduced with the
improved endosomal escape motif and the light-chain variable
region having the therapeutic antibody backbone imparted with
endosomal escape ability were expressed together in HEK293F
cell lines and purified.
Specifically, the intact IgG-format cytosol-penetrating
antibody comprising the heavy-chain variable region
introduced with the improved endosomal escape motif and the
light-chain variable region imparted with improved endosomal ability showed no cell penetrating ability. For this reason, an EpCAM-targeting cyclic peptide specific for EpCAM which is overexpressed on the cell membrane surface in various tumors including colorectal cancer was genetically fused to the N terminus of the antibody by two GGGGS linkers so that the antibody could penetrate cells (US 2015/0246945 Al).
FIG. 33a shows a schematic view showing a process of
constructing an intact IgG-format cytosol-penetrating
antibody in which an improved endosomal escape motif has been
introduced into a heavy-chain variable region thereof and an
improved endosomal escape motif has been introduced into a
light-chain variable region of a conventional therapeutic
antibody fused with an EpCAM-targeting peptide.
Specifically, animal expression vectors encoding a heavy
chain comprising the heavy-chain variable region introduced
with the improved endosomal escape motif and a light chain
comprising the monoclonal antibody light-chain variable
region imparted with improved endosomal ability were
transiently co-transfected into HEK293F protein-expressing
cells in the same manner as described in Example 1. Next,
purification of the intact IgG-format cytosol-penetrating
antibody was performed in the same manner as described in
Example 1.
FIG. 33b shows a bar graph showing the results of
observing the cytosolic localization of an intact IgG-format cytosol-penetrating antibody, in which an improved endosomal escape motif has been introduced into a heavy-chain variable region thereof and an improved endosomal escape motif has been introduced into a light-chain variable region of a conventional therapeutic antibody fused with an EpCAM targeting peptide, by confocal microscopy using calcein and quantifying the calcein fluorescence of the confocal micrographs.
Specifically, human colorectal cancer HCT116 cells
having a K-RAS G13D mutation were prepared in the same manner
as described in Example 2. The cells were incubated with 0.1,
0.25 and 0.5 pM of each of CT-ep4l and CT01-ep4l at 370C for
6 hours. After 4 hours, each well containing PBS or the
antibody was treated with 150 pM calcein and incubated at
370C for 2 hours. In the same manner as described in Example
2, the cells were washed with PBS and weakly acidic solution,
and then fixed. The nucleus was blue-stained with
Hoechst33342 and observed with a confocal microscope. In the
cells treated with varying concentrations of CT01-ep41, the
intensity of green calcein fluorescence localized in the
cytosol was stronger than that in the cells treated with CT
ep41.
FIG. 33c shows a graph quantitatively comparing the
number of cells that have taken up trypan blue depending on
pH by an intact IgG-format cytosol-penetrating antibody in which an improved endosomal escape motif has been introduced into a heavy-chain variable region thereof and an improved endosomal escape motif has been introduced into a light-chain variable region of a conventional therapeutic antibody fused with an EpCAM-targeting peptide.
Specifically, Ramos cells were attached to plates in the
same manner as described in Example 5. Then, the cells were
incubated with each of 1 pM CT-ep41 and CT01-ep41 0.5 in 200
pl of each of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES pH
7.4) (for maintaining a cytosolic pH of 7.4) and pH 5.5
buffer (HBSS(Welgene), 50 mM MES pH 5.5)(for maintaining an
early endosomal pH of 5.5) at 370C for 2 hours. After careful
washing with PBS, 200 pl of a mixture of 190 pl of PBS and 10
pl of trypan blue was added to each well, and the cells were
observed with a microscope. The number of cells showing
trypan blue uptake was counted and expressed as percentage
relative to the total number of cells. A total of 400 or more
cells were counted, and the mean values are graphically shown.
As a result, CT01-ep41 showed a concentration-dependent
increase in trypan blue uptake compared to CT-ep41.
Thus, it was confirmed that when the endosomal escape
motif was introduced into each of the heavy-chain variable
region and the light-chain variable region, the endosomal
escape ability was improved compared to when the endosomal escape motif was present only in the light-chain variable region.
Example 39: Logic of Possibility of Imparting Improved
Endosomal Escape Motif to Heavy-Chain Variable Region of
Conventional Therapeutic Antibody
Similar to the logic that the endosomal escape motif was
imparted to the light-chain variable region of conventional
therapeutic antibodies, the use of the stable backbones of
commercially available therapeutic antibody can be expected
to increase the overall expression yield. In order to examine
whether the endosomal escape motif can operate as a single
motif, the endosomal escape motif was also imparted to the
heavy-chain variable region of conventional therapeutic
antibodies.
Mutants were constructed by substituting the CDR3 of
candidate heavy-chain variable regions with the CDR3 of the
cytosol-penetrating antibody.
Table 20 below shows the names and sequences of the
mutants constructed using a gene synthesis technique.
[Table 20]
Sequence SEQ ID NO: VariameRe ion 1 10 20 30 40 50 SEQ ID Humira-01 VH EV0LVESGGGLVQPGRSLRLSCAASFTFDDYAMHNVROAPGKGLEWVSAITWNSGHIDY 60 70 80 90 110 N0:54 ADSVEGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAKGWYWMDLWGQGTLVTVSS 1 10 20 30 40 50 SEQ ID Herceptin-01 VH EVOLVESGGGLV0PGGSLRLSCAASGFNIKDTYIHIWVRQAPGKGLEWVARIYPTNGYTRY 60 70 80 90 110 NO:55 ADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRGWYWMDLWGQGTLVTVSS 1 10 20 30 40 50 SEQ ID Avastin-01 VH EVOLVESGGGLV0PGGSLRLSCAASYTFTNYGMNWVRAPGKGLEWVGWINTYTGEPTYA 60 70 80 90 110 NO:56 ADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKGWYWMDLWGOGTLVTVSS
FIG. 34a is a schematic view showing a process of
constructing an intact IgG-format cytosol-penetrating
antibody in which an improved endosomal escape motif has been
introduced into the heavy-chain variable region of a
conventional therapeutic antibody.
In the same manner as described in Example 1, cloning of
the heavy-chain variable region was performed, and the
resulting heavy chain and the light chain comprising the
monoclonal antibody light-chain variable region introduced
with the improved endosomal escape motif were expressed
together in HEK293F cell lines and purified.
Example 40: Confirmation of Possibility of Imparting
Improved Endosomal Escape Motif to Heavy-Chain Variable
Region of Monoclonal Antibody
FIG. 34b is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by an
intact IgG-format cytosol-penetrating antibody in which an
improved endosomal escape motif has been introduced into the
heavy-chain variable region of a conventional therapeutic
antibody.
Specifically, pgsD-677 cells were prepared in the same
manner as described in Example 26. Then, in the same manner
as in described Example 5, the cells were incubated with 0.5
or 1 pM of each of CT-3, CT-3_WWW, CT01-AAA, CT01_WWW-AAA,
and CT01-3, and CT01_WWW-3_WWW in 200 pl of each of pH 7.4
buffer (HBSS(Welgene), 50 mM HEPES pH 7.4 (cytosolic pH)) and
pH 5.5 buffer (HBSS(Welgene), 50 mM MES pH 5.5 (early
endosomal pH)) at 370C for 2 hours. After careful washing
with PBS, 200 pl of a mixture of 190 pl of PBS and 10 pl of
trypan blue was added to each well, and the cells were
observed with a microscope. Next, after careful washing with
PBS, the cells were lysed by adding 50 pl of 1% SDS (sodium
dodecyl sulfate) to each well. The cells were transferred to
a 96-well plate, and the absorbance at 590 nm was measured.
All the mutants showed trypan blue uptake similar to that of
CT01-ep41.
Example 41: Construction of the Heavy-Chain Variable
Region and Light-Chain Variable Region Introduced with
Aspartic Acid for Improving Properties of Cytosol-Penetrating
Antibody
In order to improve the endosomal escape ability of the
cytosol-penetrating antibody, the endosomal escape motif was
introduced into the CRD3 of each of the heavy-chain variable
region and the light-chain variable region. Due to the
hydrophobic amino acids (tryptophan (W) and tyrosine (Y) of
the endosomal escape motif, the cytosol-penetrating antibody
becomes hydrophobic. To offset this hydrophobicity, mutants
were constructed by substituting an amino acid adjacent to
the endosomal escape motif with negatively charged aspartic
acid. The mutants were constructed with reference to studies
where aspartic acid was introduced into the backbone and CDR
regions of antibody variable regions to increase the overall
stability of the antibody and reduce protein aggregation
caused by the high hydrophobicity of the antibody (Perchiacca
et al., 2011; Dudgeon et al., 2012).
Since the 3 2 nd, 33rd and 5 8th amino acids of the heavy
chain variable region are adjacent to the endosomal escape
motif of each of the heavy-chain variable region and the
heavy-chain variable region, these amino acids were
substituted with aspartic acid. The resulting amino acids
were named CT11 VH (F32D, S33D) or CT12 VH (F32D, S33D, Y58D).
Since the 27bth, 50th and 51th amino acids of the light
chain variable region are adjacent to the endosomal escape motif of each of the heavy-chain variable region and the heavy-chain variable region, these amino acids were substituted with aspartic acid. The resulting amino acids were named hT4-60 VL (L27bD), hT4-61 VL (W50D), hT4-62 VL
(W50D, A51D) or hT4-63 VL (L27Bd, W50D, A51D).
Here, the heavy-chain variable region and light-chain
variable regions used as templates for the mutants are
antibody variable regions introduced with the endosomal
escape motif while showing high yields in animal cell
expression systems, and these regions were named CT01 VH and
hT4-59 VL, respectively.
Tables 21 and 22 below the heavy-chain variable region
and light-chain variable mutant sequences obtained by
introducing aspartic acid into the backbone and CDR regions
of the antibody variable region.
[Table 21]
Variable Region Sequence SEQ ID NO:
10 20 30 40 50 52a EVQLVESGGGLVQPGGSLRLSCAASGFTFSDFSMSWVRQAPGKGLEWVSYISRTSHTTY SEQ ID CT10 VH 60 70 80 82a 90 100a 110 NQ:57 YADSVKGRFTISRDNSKNTLYLMNSLRAEDTAVYYCARGWYWMDLWGQGTLVTVSS 10 20 30 40 50 52a SEQ ID CT11 VH EVQLVESGGGLVQPGGSLRLSCAASGFTDDDFSMSWVRQAPGKGLEWVSYISRTSHTTY 60 70 80 82a 90 100a 110 NO:58 YADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGWYWMDLWGQGTLVTVSS 10 20 30 40 50 52a EVQLVESGGGLVPGGSLRLSCAASGFTDDDFSMSWVRQAPGKGLEWVSYISRTSHTTD SEQ ID CT12 VH 60 70 80 82a 90 100a 110 NQ:59 YADSVKGRFTISRDNSKNTLYLQMNSLRA[DTAVYYCARGWYWMDLWGQGTLVTVSS
[Table 22]
Sequence SEQ ID NO: VariablRegion 1 10 20 abcdef 30 40 50 DIGMTQSPSSLSASVGDRVTITCKSSOSLLNSRDGKNYLAWYQKPGKAPKLLIYW SEQ ID hT4-59 VL 60 70 80 90 100 NO:60 ASTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYFCQQYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 DIGMTOSPSSLSASVGDRVTITCKSSOSDLNSRDGKNYLAWY0QKPGKAPKLLIYW SEQ ID hT4-60 VL 60 70 80 90 100 NO:61 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYFGQQYWYWMYTFGOGTKVEIKR 1 10 20 abcdef 30 40 50 SEQ ID hT4-61 VL DIGMTOSPSSLSASVGDRVTITCKSSOSLLNSROGKNYLAWYOQKPGKAPKLLIYD 60 70 80 90 100 N0:62 ASTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYFCQQYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 DIGMTOSPSSLSASVGDRVTITCKSSQSLLNSRDGKNYLAWYQQKPGKAPKLLIYD SEQ ID hT4-62 VL 60 70 80 90 100 N0:63 DSTRESGVPSRFSGSGSGTDFTLTISSLOPEDFATYFCQQYWYWMYTFGQGTKVEIKR 1 10 20 abcdef 30 40 50 DIGMTOSPSSLSASVGDRVTITCKSSQSDLNSRDGKNYLAWYQKPGKAPKLLIYD SEQ ID hT4-63 VL 60 70 80 90 100 NO:64 DSTRESGVPSRFSGSGSGTDFTLTISSLPEDFATYFCQQYWYWMYTFGQGTKVEIKR
In the same manner as described in Example 1, cloning of
each heavy-chain variable region was performed, and the
resulting heavy chain and the light chain comprising the
monoclonal antibody light-chain variable region introduced
with the improved endosomal escape motif were expressed
together in HEK293F cell lines and purified.
Example 42: Confirmation of Improvement in Endosomal
Escape Ability of Intact IgG-Format Cytosol-Penetrating
Antibody Comprising the Heavy-Chain Variable Region and/or
Light-Chain Variable Region Introduced with Aspartic Acid
FIG. 35 is a graph quantitatively comparing the number
of cells that have taken up trypan blue depending on pH by an
intact IgG-format cytosol-penetrating antibody comprising a
light-chain variable region and/or a heavy-chain variable
region introduced with aspartic acid.
Specifically, pgsD-677 cells were prepared in the same
manner as described in Example 26. Then, in the same manner
as in described Example 5, the cells were incubated with 1 pM
of each of CT10-ep59, CT11-ep59, CT12-ep59, CT10-ep60, CT10
ep61, CT10-ep62, CT10-ep63, and CT12-ep63 in 200 pl of each
of pH 7.4 buffer (HBSS(Welgene), 50 mM HEPES pH 7.4
(cytosolic pH)) and pH 5.5 buffer (HBSS(Welgene), 50 mM MES
pH 5.5 (early endosomal pH)) at 370C for 2 hours. After
careful washing with PBS, 200 pl of a mixture of 190 pl of
PBS and 10 pl of trypan blue was added to each well, and the
cells were observed with a microscope. Next, after careful
washing with PBS, the cells were lysed by adding 50 pl of 1%
SDS (sodium dodecyl sulfate) to each well. The cells were
transferred to a 96-well plate, and the absorbance at 590 nm
was measured. All the mutants showed trypan blue uptake
similar to that of CT01-ep41 tested in the above Example.
This suggests that even when aspartic acid is introduced, the
endosomal escape ability is not reduced. Antibody stability
experiments for these antibodies will be carried out later.
Example 43: Analysis of Structure of Cytosol-Penetrating
Antibody
In order to identify the structures of the IgG-format
cytosol-penetrating antibodies, the CT-59 antibody showing a
very high production yield was used among the cytosol
penetrating antibodies having endosomal escape ability at
endosomal acidic pH conditions. This antibody is an IgG
format cytosol-penetrating antibody comprising hTO VH and
hT4-59 VL as the heavy-chain variable region and the light
chain variable region, respectively.
To identify the three-dimensional structure, IgG-format
CT-59 produced using HEK293 cells was treated with papain,
and then high-purity Fab was purified by protein A column and
size exclusion chromatography. Next, a crystal for structural
identification was formed using an Mosquito-LCP system under
screening buffer index G1 conditions (0.2 M NaCl, 0.1 M Tris,
pH 8.5, 25 % (w/v) PEG3350). When the cytosol-penetrating
antibody was mixed with the screening buffer, the final pH
was 8.1.
FIG. 36a shows the results of observing a crystal of CT
59 Fab, formed under Index G1 conditions, by RI1000 (Rock
ImagerlOO; automatic protein crystal image analysis system).
X-ray diffraction data were collected at the 5C beamline
(Pohang Accelerator Laboratory(PAL)), and indexing and
scaling were performed using the HKL2000 package (HKL
Research Inc., USA), and then the Initial electron density
map of CT-59 Fab was obtained by a molecular replacement (MR)
method. The three-dimensional structure data of a protein
having a similar to that of CT-59 is required to use the MR
method, and a structure model obtained through the FFAS site
(http://ffas.sanfordburnham.org/ffas-cgi/cgi/ffas.pl) was
used as a model. Initial phase information of CT-59 Fab was
obtained using CCP4. Based on the obtained initial phase
information, a model building operation was performed using
COOT (Crystallographic Object-Oriented Toolkit,
http://www.biop.ox.ac.uk/coot/)), and refinement and
validation operations were performed using Refmac5
(http://www.ccp4.ac.uk/html/refmac5.html) and PHENIX (Python
based Hierarchical ENvironment for Integrated Xtallography,
http:// www.phenix-online.org/) software (see FIG. 36b).
As a result, at a final pH of pH 8.1, a three
dimensional structure with a high resolution of 1.8A was
observed. It was found that the distance between the 1st
aspartic acid (D) of the light-chain variable region of CT-59
and the side chain of the 9 5 th methionine (M) of the light
chain variable region was 6.87 A.
Although the present disclosure has been described in
detail with reference to the specific features, it will be
apparent to those skilled in the art that this description is
only for a preferred embodiment and does not limit the scope of the present disclosure. Thus, the substantial scope of the present disclosure will be defined by the appended claims and equivalents thereof.

Claims (19)

  1. [Claims]
    [Claim 1]
    A cytosol-penetrating antibody or antigen-binding
    fragment thereof comprising a light-chain variable region
    and/or heavy-chain variable region that comprises an
    endosomal escape motif in its CDR3, wherein the endosomal
    escape motif comprises a sequence represented by the
    following formula:
    X1-X2-X3-Z1
    wherein each of Xl, X2 and X3 is selected from the group
    consisting of tryptophan (W), tyrosine (Y), histidine (H) and
    phenylalanine (F), wherein the endosomal escape motif
    comprise one or more tryptophan (W);
    Z1 is selected from the group consisting of methionine
    (M), isoleucine (I), leucine (L), histidine (H), aspartic
    acid (D), and glutamic acid (E);
    the 1st amino acid of the light-chain variable region
    and/or heavy-chain variable region is aspartic acid (D) or
    glutamic acid (E);
    the light-chain variable region and/or heavy-chain
    variable region comprising Z1 induces a change in properties
    of the antibody under endosomal acidic pH conditions; and
    the antibody exhibits an ability to escape from
    endosomes into the cytosol through the change in properties
    of the antibody.
  2. [Claim 2]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of claim 1, wherein the 1st amino acid of
    the light-chain variable region and/or heavy-chain variable
    region interacts with the Z1 under endosomal acidic pH
    conditions to induce a change in properties of the cytosol
    penetrating antibody.
  3. [Claim 3]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of claim 1 or 2, wherein the endosomal
    escape motif X1-X2-X3 of the light-chain variable region
    and/or heavy-chain variable region comprises one or more
    tryptophans.
  4. [Claim 4]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 3, wherein the
    endosomal escape motif X1-X2-X3 of the light-chain variable
    region and/or heavy-chain variable region comprises a sequence
    selected from the group consisting of W-W-W, W-W-H, W-Y-W, Y
    W-W, W-Y-H, and Y-W-H (where W is tryptophan, Y is tyrosine, H
    is histidine)
  5. [Claim 5]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 4, wherein the
    light-chain variable region and/or heavy-chain variable region further comprises an amino acid sequence represented by (al-...-an, where n is an integer ranging from 1 to 10) between X3 and Z1.
  6. [Claim 61
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 5, wherein the
    sequence further comprises Z2 linked to Xl, and thus is
    represented by the following formula:
    Z2-X1-X2-X3-Z1,
    wherein Z2 is selected from the group consisting of
    glutamine (Q), leucine (L) histidine (H).
  7. [Claim 7]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 6, wherein the 1st
    amino acid of the light-chain variable region and/or heavy
    chain variable region interacts with Z1 and/or Z2 under
    endosomal acidic pH conditions to induce a change in
    properties of the cytosol-penetrating antibody.
  8. [Claim 8]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 7, wherein the
    light-chain variable region and/or heavy-chain variable region
    further comprises an amino acid sequence represented by (bl
    ...- bn, where n is an integer ranging from 1 to 10) between Xl
    and Z2.
  9. [Claim 9]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 8, wherein the
    CDR3 of the light-chain variable region comprises the
    sequence selected from the group consisting of SEQ ID NOS: 8
    to 12, 24 or 51.
  10. [Claim 10]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 9, wherein the
    CDR3 of the heavy-chain variable region comprises the
    sequence selected from the group consisting of SEQ ID NOS: 46
    to 49, and 53.
  11. [Claim 11]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 10, wherein the
    light-chain variable region comprise a sequence having a
    homolog of at least 80% to a light-chain variable region
    sequence selected from the group consisting of SEQ ID NOS: 1
    to 5, 13 to 23, 25 to 37, 50, and 60 to 64.
  12. [Claim 12]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 11, wherein the
    heavy-chain variable region comprise a sequence having a
    homolog of at least 80% to a heavy-chain variable region sequence selected from the group consisting of SEQ ID NOS: 39 to 42, 52, and 54 to 59.
  13. [Claim 13]
    The cytosol-penetrating antibody or antigen-binding
    fragment thereof of any one of claims 1 to 12, wherein the
    antibody is an intact immunoglobulin G-format antibody.
  14. [Claim 14]
    A nucleic acid encoding the antibody or antigen-binding
    fragment thereof of any one of claims 1 to 13.
  15. [Claim 15]
    A vector comprising the nucleic acid of claim 14.
  16. [Claim 16]
    A cell transformed with the vector of claim 15.
  17. [Claim 17]
    A composition for delivering an active substance into
    cytosol, comprising the cytosol-penetrating antibody or
    antigen-binding fragment thereof of any one of claims 1 to 13.
  18. [Claim 18]
    The composition of claim 17, wherein the active
    substance comprises one or more selected from the group
    consisting of peptides, proteins, toxins, antibodies,
    antibody fragments, RNAs, siRNAs, DNAs, small molecule drugs,
    nanoparticles, and liposomes.
  19. [Claim 19]
    A method for producing the cytosol-penetrating antibody or
    antigen-binding fragment thereof of any one of claims 1 to 13,
    the method comprising a step of grafting the endosomal escape
    motif X1-X2-X3-Z1 (wherein X1-X2-X3 is selected from the
    group consisting of tryptophan (W), tyrosine (Y), histidine
    (H), and phenylalanine (F), wherein the endosomal escape
    motif comprise one or more tryptophan (W)) into the CDR3 of a
    light-chain and/or heavy-chain variable region.
    【Drawings】
    【Figure 1】
    【Figure 2a】
    1/34
    【Figure 2b】
    【Figure 2c】
    2/34
    【Figure 2d】
    【Figure 3a】
    3/34
    【Figure 3b】
    【Figure 3c】
    4/34
    【Figure 4】
    5/34
    【Figure 5】
    【Figure 6a】
    6/34
    【Figure 6b】
    【Figure 7a】
    7/34
    【Figure 7b】
    【Figure 8】
    8/34
    【Figure 9】
    【Figure 10】
    9/34
    【Figure 11】
    10/34
    【Figure 12】
    【Figure 13】
    11/34
    【Figure 14a】
    【Figure 14b】
    12/34
    【Figure 15a】
    【Figure 15b】
    【Figure 16】
    13/34
    【Figure 17a】
    【Figure 17b】
    【Figure 18】
    14/34
    【Figure 19】
    【Figure 20a】
    15/34
    【Figure 20b】
    【Figure 21a】
    16/34
    【Figure 21b】
    【Figure 21c】
    17/34
    【Figure 22a】
    【Figure 22b】
    18/34
    【Figure 22c】
    【Figure 23a】
    19/34
    【Figure 23b】
    【Figure 23c】
    20/34
    【Figure 24】
    【Figure 25a】
    21/34
    【Figure 25b】
    【Figure 26a】
    【Figure 26b】
    22/34
    【Figure 27】
    【Figure 28a】
    23/34
    【Figure 28b】
    【Figure 28c】
    24/34
    【Figure 29a】
    【Figure 29b】
    25/34
    【Figure 29c】
    【Figure 30a】
    【Figure 30b】
    26/34
    【Figure 30c】
    【Figure 30d】
    27/34
    【Figure 31a】
    【Figure 31b】
    28/34
    【Figure 32a】
    29/34
    【Figure 32b】
    【Figure 33a】
    30/34
    【Figure 33b】
    【Figure 33c】
    31/34
    【Figure 34a】
    【Figure 34b】
    32/34
    【Figure 35】
    【Figure 36a】
    33/34
    【Figure 36b】
    34/34
    PCTKR2017005559-seql.txt <110> Orum Therapeutics <120> Cytosol-Penetrating Antibodies and Uses Thereof <130> DP-2017-0135-KR
    <150> KR 10-2016-0065365 <151> 2016-05-27
    <150> KR 10-2016-0065379 <151> 2016-05-27 <160> 78 <170> KoPatentIn 3.0
    <210> 1 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-WWH VL
    <400> 1 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Trp Trp His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 2 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-WYW VL
    <400> 2 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Page 1
    PCTKR2017005559-seql.txt Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 3 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-YWW VL
    <400> 3 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Trp Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 4 <211> 114 <212> PRT <213> Artificial Sequence
    Page 2
    PCTKR2017005559-seql.txt <220> <223> hT4-WYH VL
    <400> 4 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Trp Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 5 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-YWH VL
    <400> 5 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Trp His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    Page 3
    PCTKR2017005559-seql.txt
    <210> 6 <211> 17 <212> PRT <213> Artificial Sequence <220> <223> CDR1
    <400> 6 Lys Ser Ser Gln Ser Leu Phe Asn Ser Arg Thr Arg Lys Asn Tyr Leu 1 5 10 15
    Ala
    <210> 7 <211> 7 <212> PRT <213> Artificial Sequence <220> <223> CDR2
    <400> 7 Trp Ala Ser Thr Arg Glu Ser 1 5
    <210> 8 <211> 9 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-WWH VL
    <400> 8 Gln Gln Tyr Trp Trp His Met Tyr Thr 1 5
    <210> 9 <211> 9 <212> PRT <213> Artificial Sequence <220> <223> hT4-WYW VL
    <400> 9 Gln Gln Tyr Trp Tyr Trp Met Tyr Thr 1 5
    <210> 10 <211> 9 Page 4
    PCTKR2017005559-seql.txt <212> PRT <213> Artificial Sequence
    <220> <223> hT4-YWW VL
    <400> 10 Gln Gln Tyr Tyr Trp Trp Met Tyr Thr 1 5
    <210> 11 <211> 9 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-WYH VL
    <400> 11 Gln Gln Tyr Trp Tyr His Met Tyr Thr 1 5
    <210> 12 <211> 9 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-YWH VL
    <400> 12 Gln Gln Tyr Tyr Trp His Met Tyr Thr 1 5
    <210> 13 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-RYR VL
    <400> 13 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Page 5
    PCTKR2017005559-seql.txt 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Arg Tyr Arg Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 14 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-IYI VL
    <400> 14 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Ile Tyr Ile Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 15 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-GYG VL
    <400> 15 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Page 6
    PCTKR2017005559-seql.txt Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Gly Tyr Gly Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 16 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 VL
    <400> 16 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 17 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 D1E-M95L VL
    Page 7
    PCTKR2017005559-seql.txt <400> 17 Glu Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Leu Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 18 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 Y91H VL
    <400> 18 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    His Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 19 <211> 114 Page 8
    PCTKR2017005559-seql.txt <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 Y91D VL
    <400> 19 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Asp Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 20 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L2E Q90L VL
    <400> 20 Asp Glu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Leu 85 90 95
    Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Page 9
    PCTKR2017005559-seql.txt Lys Arg
    <210> 21 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L2E T97I VL
    <400> 21 Asp Glu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Tyr Ile Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 22 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 Q90H M95A VL
    <400> 22 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Page 10
    PCTKR2017005559-seql.txt 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln His 85 90 95 Tyr Trp Tyr Trp Ala Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 23 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 Q90H VL
    <400> 23 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln His 85 90 95 Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 24 <211> 9 <212> PRT <213> Artificial Sequence <220> <223> hT4 3 Q90H VL
    <400> 24 Gln His Tyr Trp Tyr Trp Met Tyr Thr 1 5
    <210> 25 <211> 113 Page 11
    PCTKR2017005559-seql.txt <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L8-1 VL
    <400> 25 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys 100 105 110
    Arg
    <210> 26 <211> 113 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L8-2 VL
    <400> 26 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95
    Trp Tyr Trp Met Pro Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys 100 105 110 Page 12
    PCTKR2017005559-seql.txt Arg
    <210> 27 <211> 115 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L10-1 VL
    <400> 27 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Pro Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu 100 105 110
    Ile Lys Arg 115
    <210> 28 <211> 115 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 L10-2 VL
    <400> 28 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Page 13
    PCTKR2017005559-seql.txt 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Leu Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu 100 105 110 Ile Lys Arg 115
    <210> 29 <211> 115 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 L10-3 VL
    <400> 29 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Tyr Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu 100 105 110 Ile Lys Arg 115
    <210> 30 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 L11-1 VL
    <400> 30 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Page 14
    PCTKR2017005559-seql.txt Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Leu Tyr Met Tyr Thr Phe Gly Gln Gly Thr Lys Val 100 105 110
    Glu Ile Lys Arg 115
    <210> 31 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> hT4-3 L11-2 VL
    <400> 31 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Pro Trp Tyr Trp Pro Met Tyr Thr Phe Gly Gln Gly Thr Lys Val 100 105 110 Glu Ile Lys Arg 115
    <210> 32 <211> 108 <212> PRT <213> Artificial Sequence <220> <223> Necitumumab-WYW VL
    Page 15
    PCTKR2017005559-seql.txt <400> 32 Glu Ile Val Met Thr Gln Ser Pro Ala Thr Leu Ser Leu Ser Pro Gly 1 5 10 15 Glu Arg Ala Thr Leu Ser Cys Arg Ala Ser Gln Ser Val Ser Ser Tyr 20 25 30 Leu Ala Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Arg Leu Leu Ile 35 40 45
    Tyr Asp Ala Ser Asn Arg Ala Thr Gly Ile Pro Ala Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Glu Pro 65 70 75 80
    Glu Asp Phe Ala Val Tyr Phe Cys Gln Gln Tyr Trp Tyr Trp Met Tyr 85 90 95 Thr Phe Gly Gln Gly Thr Lys Ala Glu Ile Lys Arg 100 105
    <210> 33 <211> 108 <212> PRT <213> Artificial Sequence
    <220> <223> Panitumumab-WYW VL
    <400> 33 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile Ser Asn Tyr 20 25 30
    Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45
    Tyr Asp Ala Ser Asn Leu Glu Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Phe Thr Ile Ser Ser Leu Gln Pro 65 70 75 80
    Glu Asp Ile Ala Thr Tyr Phe Cys Gln Gln Tyr Trp Tyr Trp Met Tyr 85 90 95 Thr Phe Gly Gly Gly Thr Lys Val Glu Ile Lys Arg 100 105
    <210> 34 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> Lumretuzumab-WYW VL
    Page 16
    PCTKR2017005559-seql.txt <400> 34 Asp Ile Val Met Thr Gln Ser Pro Asp Ser Leu Ala Val Ser Leu Gly 1 5 10 15 Glu Arg Ala Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Asn Ser 20 25 30 Gly Asn Gln Lys Asn Tyr Leu Thr Trp Tyr Gln Gln Lys Pro Gly Gln 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Ala Glu Asp Val Ala Val Tyr Phe Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Leu Glu Ile 100 105 110
    Lys Arg
    <210> 35 <211> 113 <212> PRT <213> Artificial Sequence <220> <223> Nimotuzumab-WYW VL
    <400> 35 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Ser Ser Gln Asn Ile Val His Ser 20 25 30 Asn Gly Asn Thr Tyr Leu Asp Trp Tyr Gln Gln Thr Pro Gly Lys Ala 35 40 45 Pro Lys Leu Leu Ile Tyr Lys Val Ser Asn Arg Phe Ser Gly Val Pro 50 55 60
    Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Phe Thr Ile 65 70 75 80 Ser Ser Leu Gln Pro Glu Asp Ile Ala Thr Tyr Phe Cys Gln Gln Tyr 85 90 95 Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Leu Gln Ile Thr 100 105 110
    Arg
    <210> 36 Page 17
    PCTKR2017005559-seql.txt <211> 109 <212> PRT <213> Artificial Sequence <220> <223> Emibetuzumab-WYW VL
    <400> 36 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Ser Val Ser Ser Ser Val Ser Ser Ile 20 25 30
    Tyr Leu His Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu 35 40 45 Ile Tyr Ser Thr Ser Asn Leu Ala Ser Gly Val Pro Ser Arg Phe Ser 50 55 60 Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln 65 70 75 80 Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln Tyr Trp Tyr Trp Met 85 90 95 Tyr Thr Phe Gly Gly Gly Thr Lys Val Glu Ile Lys Arg 100 105
    <210> 37 <211> 108 <212> PRT <213> Artificial Sequence
    <220> <223> Pertuzumab-WYW VL
    <400> 37 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ala Ser Gln Asp Val Ser Ile Gly 20 25 30
    Val Ala Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45 Tyr Ser Ala Ser Tyr Arg Tyr Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80 Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln Tyr Trp Tyr Trp Met Tyr 85 90 95 Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys Arg 100 105
    Page 18
    PCTKR2017005559-seql.txt <210> 38 <211> 120 <212> PRT <213> Artificial Sequence <220> <223> HT0 VH
    <400> 38 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
    Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60
    Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80
    Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Ala Tyr Lys Arg Gly Tyr Ala Met Asp Tyr Trp Gly Gln 100 105 110
    Gly Thr Thr Val Thr Val Ser Ser 115 120
    <210> 39 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> HT0-01 VH
    <400> 39 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60
    Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Page 19
    PCTKR2017005559-seql.txt Ala Arg Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Thr Val 100 105 110
    Thr Val Ser Ser 115
    <210> 40 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> HT0-02 VH
    <400> 40 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
    Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60
    Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Trp Tyr Trp Phe Asp Leu Trp Gly Gln Gly Thr Thr Val 100 105 110
    Thr Val Ser Ser 115
    <210> 41 <211> 117 <212> PRT <213> Artificial Sequence
    <220> <223> HT0-03 VH
    <400> 41 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
    Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60 Page 20
    PCTKR2017005559-seql.txt Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Arg Gly Trp Tyr Trp Gly Phe Asp Leu Trp Gly Gln Gly Thr Thr 100 105 110
    Val Thr Val Ser Ser 115
    <210> 42 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> HT0-04 VH
    <400> 42 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
    Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60
    Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80
    Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Tyr Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Thr Val 100 105 110 Thr Val Ser Ser 115
    <210> 43 <211> 5 <212> PRT <213> Artificial Sequence
    <220> <223> CDR1
    <400> 43 Ser Tyr Val Met His 1 5
    Page 21
    PCTKR2017005559-seql.txt <210> 44 <211> 17 <212> PRT <213> Artificial Sequence <220> <223> CDR2
    <400> 44 Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val Lys 1 5 10 15 Gly
    <210> 45 <211> 11 <212> PRT <213> Artificial Sequence
    <220> <223> HT0 VH
    <400> 45 Gly Ala Arg Lys Arg Gly Tyr Ala Met Asp Tyr 1 5 10
    <210> 46 <211> 7 <212> PRT <213> Artificial Sequence
    <220> <223> HT0-01 VH
    <400> 46 Gly Trp Tyr Trp Met Asp Leu 1 5
    <210> 47 <211> 7 <212> PRT <213> Artificial Sequence <220> <223> HT0-02 VH
    <400> 47 Gly Trp Tyr Trp Phe Asp Leu 1 5
    <210> 48 <211> 8 <212> PRT <213> Artificial Sequence Page 22
    PCTKR2017005559-seql.txt <220> <223> HT0-03 VH
    <400> 48 Gly Trp Tyr Trp Gly Phe Asp Leu 1 5
    <210> 49 <211> 7 <212> PRT <213> Artificial Sequence
    <220> <223> HT0-04 VH
    <400> 49 Tyr Trp Tyr Trp Met Asp Leu 1 5
    <210> 50 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-3 WWW VL
    <400> 50 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95 Tyr Trp Trp Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 51 <211> 9 <212> PRT <213> Artificial Sequence Page 23
    PCTKR2017005559-seql.txt <220> <223> hT4 3 WWW VL
    <400> 51 Gln Gln Tyr Trp Trp Trp Met Tyr Thr 1 5
    <210> 52 <211> 116 <212> PRT <213> Artificial Sequence
    <220> <223> HT0-01 WWW VH
    <400> 52 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
    Val Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Asn Pro Tyr Asn Asp Gly Asn Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg Lys Thr Leu Tyr 65 70 75 80
    Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Trp Trp Trp Met Asp Leu Trp Gly Gln Gly Thr Thr Val 100 105 110
    Thr Val Ser Ser 115
    <210> 53 <211> 7 <212> PRT <213> Artificial Sequence <220> <223> HT0-01 WWW VH
    <400> 53 Gly Trp Trp Trp Met Asp Leu 1 5
    <210> 54 <211> 116 <212> PRT <213> Artificial Sequence Page 24
    PCTKR2017005559-seql.txt <220> <223> Humira-01 VH
    <400> 54 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Arg 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Asp Asp Tyr 20 25 30 Ala Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Ala Ile Thr Trp Asn Ser Gly His Ile Asp Tyr Ala Asp Ser Val 50 55 60 Glu Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Ser Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110 Thr Val Ser Ser 115
    <210> 55 <211> 116 <212> PRT <213> Artificial Sequence
    <220> <223> Herceptin-01 VH
    <400> 55 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Asn Ile Lys Asp Thr 20 25 30
    Tyr Ile His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Arg Ile Tyr Pro Thr Asn Gly Tyr Thr Arg Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ser Arg Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110 Thr Val Ser Ser Page 25
    PCTKR2017005559-seql.txt 115
    <210> 56 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> Avastin-01 VH
    <400> 56 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Tyr Thr Phe Thr Asn Tyr 20 25 30 Gly Met Asn Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Gly Trp Ile Asn Thr Tyr Thr Gly Glu Pro Thr Tyr Ala Ala Asp Phe 50 55 60
    Lys Arg Arg Phe Thr Phe Ser Leu Asp Thr Ser Lys Ser Thr Ala Tyr 65 70 75 80
    Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Lys Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110
    Thr Val Ser Ser 115
    <210> 57 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> CT10 VH
    <400> 57 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Asp Phe 20 25 30
    Ser Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Tyr Ile Ser Arg Thr Ser His Thr Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80
    Page 26
    PCTKR2017005559-seql.txt Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110
    Thr Val Ser Ser 115
    <210> 58 <211> 116 <212> PRT <213> Artificial Sequence
    <220> <223> CT11 VH
    <400> 58 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Asp Asp Asp Phe 20 25 30
    Ser Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
    Ser Tyr Ile Ser Arg Thr Ser His Thr Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80
    Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110
    Thr Val Ser Ser 115
    <210> 59 <211> 116 <212> PRT <213> Artificial Sequence <220> <223> CT12 VH
    <400> 59 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
    Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Asp Asp Asp Phe 20 25 30
    Ser Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Page 27
    PCTKR2017005559-seql.txt Ser Tyr Ile Ser Arg Thr Ser His Thr Thr Asp Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
    Ala Arg Gly Trp Tyr Trp Met Asp Leu Trp Gly Gln Gly Thr Leu Val 100 105 110 Thr Val Ser Ser 115
    <210> 60 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-59 VL
    <400> 60 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Leu Asn Ser 20 25 30
    Arg Asp Gly Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 61 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-60 VL
    <400> 61 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly Page 28
    PCTKR2017005559-seql.txt 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Asp Leu Asn Ser 20 25 30 Arg Asp Gly Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95
    Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 62 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-61 VL
    <400> 62 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Leu Asn Ser 20 25 30 Arg Asp Gly Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Asp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 63 <211> 114 <212> PRT <213> Artificial Sequence Page 29
    PCTKR2017005559-seql.txt <220> <223> hT4-62 VL
    <400> 63 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Leu Asn Ser 20 25 30 Arg Asp Gly Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Asp Asp Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 64 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-63 VL
    <400> 64 Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Asp Leu Asn Ser 20 25 30
    Arg Asp Gly Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Asp Asp Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln 85 90 95 Tyr Trp Tyr Trp Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg Page 30
    PCTKR2017005559-seql.txt
    <210> 65 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4 VL
    <400> 65 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 66 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-D1A VL
    <400> 66 Ala Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Page 31
    PCTKR2017005559-seql.txt Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 67 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-M95A VL
    <400> 67 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Ala Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 68 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-D1E VL
    <400> 68 Glu Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Page 32
    PCTKR2017005559-seql.txt Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 69 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-M95L VL
    <400> 69 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Tyr His Leu Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 70 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-Y91A VL
    <400> 70 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly Page 33
    PCTKR2017005559-seql.txt 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Ala Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 71 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-Y92A VL
    <400> 71 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Ala Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 72 <211> 114 <212> PRT <213> Artificial Sequence Page 34
    PCTKR2017005559-seql.txt <220> <223> hT4-Y93A VL
    <400> 72 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Ala His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    <210> 73 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-H94A VL
    <400> 73 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45 Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Tyr Ala Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg Page 35
    PCTKR2017005559-seql.txt
    <210> 74 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-AAA VL
    <400> 74 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30 Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Ala Ala Ala Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 75 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-Y96A VL
    <400> 75 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Phe Asn Ser 20 25 30
    Arg Thr Arg Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Page 36
    PCTKR2017005559-seql.txt Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Met Ala Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 76 <211> 108 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-01 VL
    <400> 76 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
    Asp Arg Val Thr Ile Thr Cys Lys Ala Ser Gln Gly Leu Ser Ser Tyr 20 25 30
    Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45
    Tyr Trp Ala Ser Thr Leu Glu Ser Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80
    Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Tyr Tyr Tyr His Met Tyr 85 90 95
    Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys Arg 100 105
    <210> 77 <211> 114 <212> PRT <213> Artificial Sequence
    <220> <223> hT4-02 VL
    <400> 77 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Leu Tyr Ser 20 25 30
    Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Page 37
    PCTKR2017005559-seql.txt Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110
    Lys Arg
    <210> 78 <211> 114 <212> PRT <213> Artificial Sequence <220> <223> hT4-03 VL
    <400> 78 Asp Leu Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Lys Ser Ser Gln Ser Leu Leu Asp Ser 20 25 30
    Asp Asp Gly Asn Thr Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys 35 40 45
    Ala Pro Lys Leu Leu Ile Tyr Trp Leu Ser Tyr Arg Ala Ser Gly Val 50 55 60
    Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr 65 70 75 80
    Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln 85 90 95
    Tyr Tyr Tyr His Met Tyr Thr Phe Gly Gln Gly Thr Lys Val Glu Ile 100 105 110 Lys Arg
    Page 38
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