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AU2001284308A1 - Method of nucleic acid typing or sequencing - Google Patents

Method of nucleic acid typing or sequencing

Info

Publication number
AU2001284308A1
AU2001284308A1 AU2001284308A AU8430801A AU2001284308A1 AU 2001284308 A1 AU2001284308 A1 AU 2001284308A1 AU 2001284308 A AU2001284308 A AU 2001284308A AU 8430801 A AU8430801 A AU 8430801A AU 2001284308 A1 AU2001284308 A1 AU 2001284308A1
Authority
AU
Australia
Prior art keywords
nucleic acid
sequencing
acid molecule
typing
acid typing
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001284308A
Inventor
Bjorn Ekstrom
Nader Pourmand
Mostafa Ronaghi
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Biotage AB
Leland Stanford Junior University
Original Assignee
Pyrosequencing AB
Leland Stanford Junior University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Pyrosequencing AB, Leland Stanford Junior University filed Critical Pyrosequencing AB
Publication of AU2001284308A1 publication Critical patent/AU2001284308A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Semiconductor Lasers (AREA)

Abstract

The method of the invention relates to a method of typing one or more nucleic acid molecules, said method comprising: simultaneously or sequentially performing two or more primer extension reactions, each primer binding at a different predetermined site in said nucleic acid molecule(s), and determining the pattern of nucleotide incorporation to obtain a test pattern for said nucleic acid molecule(s) which is optionally compared with one or more reference patterns to type the said nucleic acid molecule(s).
AU2001284308A 2000-09-08 2001-09-10 Method of nucleic acid typing or sequencing Abandoned AU2001284308A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GB0022069.9 2000-09-08
GBGB0022069.9A GB0022069D0 (en) 2000-09-08 2000-09-08 Method
PCT/GB2001/004042 WO2002020837A2 (en) 2000-09-08 2001-09-10 Method of nucleic acid typing or sequencing

Publications (1)

Publication Number Publication Date
AU2001284308A1 true AU2001284308A1 (en) 2002-03-22

Family

ID=9899101

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001284308A Abandoned AU2001284308A1 (en) 2000-09-08 2001-09-10 Method of nucleic acid typing or sequencing

Country Status (10)

Country Link
US (1) US20050084851A1 (en)
EP (1) EP1322782B1 (en)
JP (1) JP4945779B2 (en)
AT (1) ATE415490T1 (en)
AU (1) AU2001284308A1 (en)
CA (1) CA2421857A1 (en)
DE (1) DE60136724D1 (en)
ES (1) ES2317928T3 (en)
GB (1) GB0022069D0 (en)
WO (1) WO2002020837A2 (en)

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US7211390B2 (en) 1999-09-16 2007-05-01 454 Life Sciences Corporation Method of sequencing a nucleic acid
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US6956114B2 (en) 2001-10-30 2005-10-18 '454 Corporation Sulfurylase-luciferase fusion proteins and thermostable sulfurylase
US6902921B2 (en) 2001-10-30 2005-06-07 454 Corporation Sulfurylase-luciferase fusion proteins and thermostable sulfurylase
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WO2004029294A1 (en) * 2002-09-27 2004-04-08 Biotage Ab New sequencing method for sequencing rna molecules
US7575865B2 (en) 2003-01-29 2009-08-18 454 Life Sciences Corporation Methods of amplifying and sequencing nucleic acids
ES2342665T3 (en) 2003-01-29 2010-07-12 454 Corporation SEQUENCING FROM TWO EXTREME.
CA2522062C (en) * 2003-04-11 2011-03-29 Dna Landmarks Inc. Methods for relative quantification of specific nucleic acid sequences
WO2005042764A2 (en) 2003-10-28 2005-05-12 Dynal Biotech Llc Primers, methods and kits for amplifying or detecting human leukocyte antigen alleles
US7169560B2 (en) 2003-11-12 2007-01-30 Helicos Biosciences Corporation Short cycle methods for sequencing polynucleotides
DE10356783A1 (en) * 2003-12-02 2005-07-07 Universität Zu Köln Method for multiplex sequencing
FR2866349B1 (en) * 2004-02-12 2008-05-16 Biomerieux Sa METHOD FOR DIAGNOSING / PROGNOSING THROMBOSIS
US7981604B2 (en) 2004-02-19 2011-07-19 California Institute Of Technology Methods and kits for analyzing polynucleotide sequences
GB0406863D0 (en) * 2004-03-26 2004-04-28 Qiagen As Nucleic acid sequencing
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GB0406864D0 (en) 2004-03-26 2004-04-28 Qiagen As Nucleic acid sequencing
DE602005027700D1 (en) 2004-05-25 2011-06-09 Helicos Biosciences Corp PROCESS FOR NUCLEIC ACID IMMOBILIZATION
US7476734B2 (en) 2005-12-06 2009-01-13 Helicos Biosciences Corporation Nucleotide analogs
US7785785B2 (en) * 2004-11-12 2010-08-31 The Board Of Trustees Of The Leland Stanford Junior University Charge perturbation detection system for DNA and other molecules
ATE490315T1 (en) * 2004-11-24 2010-12-15 Immunehealth SCREENING METHODS FOR HOMOLOGUE RECOMBINATION EVENTS
US7220549B2 (en) 2004-12-30 2007-05-22 Helicos Biosciences Corporation Stabilizing a nucleic acid for nucleic acid sequencing
US7482120B2 (en) 2005-01-28 2009-01-27 Helicos Biosciences Corporation Methods and compositions for improving fidelity in a nucleic acid synthesis reaction
US7666593B2 (en) 2005-08-26 2010-02-23 Helicos Biosciences Corporation Single molecule sequencing of captured nucleic acids
US7397546B2 (en) 2006-03-08 2008-07-08 Helicos Biosciences Corporation Systems and methods for reducing detected intensity non-uniformity in a laser beam
EP2952590B1 (en) 2010-06-11 2017-07-26 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
EP3141614B1 (en) 2010-10-27 2018-11-28 Life Technologies Corporation Predictive model for use in sequencing-by-synthesis
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
US9594870B2 (en) 2010-12-29 2017-03-14 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
WO2012092515A2 (en) 2010-12-30 2012-07-05 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
EP2658999B1 (en) 2010-12-30 2019-03-13 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
CN103764845B (en) 2011-04-08 2016-02-17 生命科技股份有限公司 For phase-protected reagent flow sequencing in sequencing-by-synthesis
WO2013017702A1 (en) * 2011-08-01 2013-02-07 2B Blackbio S.L. Method for determining the genotype of multiple sequences
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
EP3053072B1 (en) 2013-10-04 2024-02-21 Life Technologies Corporation Methods and systems for modeling phasing effects in sequencing using termination chemistry
EP2860262A1 (en) * 2013-10-09 2015-04-15 Universität Heidelberg Method for the quantitative analysis of nucleic acid fragmentation and amplifiability
WO2016060974A1 (en) 2014-10-13 2016-04-21 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
US10978174B2 (en) 2015-05-14 2021-04-13 Life Technologies Corporation Barcode sequences, and related systems and methods
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
EP3469102B1 (en) 2016-06-10 2023-01-25 Roche Diagnostics GmbH Compositions and methods for detection of hepatitis c virus genotype 3
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Also Published As

Publication number Publication date
GB0022069D0 (en) 2000-10-25
ES2317928T3 (en) 2009-05-01
JP4945779B2 (en) 2012-06-06
EP1322782A2 (en) 2003-07-02
US20050084851A1 (en) 2005-04-21
ATE415490T1 (en) 2008-12-15
WO2002020837A2 (en) 2002-03-14
EP1322782B1 (en) 2008-11-26
CA2421857A1 (en) 2002-03-14
JP2004508055A (en) 2004-03-18
DE60136724D1 (en) 2009-01-08
WO2002020837A3 (en) 2003-03-13

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