AU2001268513A1 - Nucleic acid accessible hybridization sites - Google Patents
Nucleic acid accessible hybridization sitesInfo
- Publication number
- AU2001268513A1 AU2001268513A1 AU2001268513A AU6851301A AU2001268513A1 AU 2001268513 A1 AU2001268513 A1 AU 2001268513A1 AU 2001268513 A AU2001268513 A AU 2001268513A AU 6851301 A AU6851301 A AU 6851301A AU 2001268513 A1 AU2001268513 A1 AU 2001268513A1
- Authority
- AU
- Australia
- Prior art keywords
- nucleic acid
- hybridization sites
- acid accessible
- accessible
- hybridization
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 238000009396 hybridization Methods 0.000 title 1
- 150000007523 nucleic acids Chemical class 0.000 title 1
- 102000039446 nucleic acids Human genes 0.000 title 1
- 108020004707 nucleic acids Proteins 0.000 title 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
- C12Q1/701—Specific hybridization probes
- C12Q1/702—Specific hybridization probes for retroviruses
- C12Q1/703—Viruses associated with AIDS
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6811—Selection methods for production or design of target specific oligonucleotides or binding molecules
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Immunology (AREA)
- Virology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- AIDS & HIV (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US21230800P | 2000-06-17 | 2000-06-17 | |
| US60/212,308 | 2000-06-17 | ||
| PCT/US2001/019401 WO2001098537A2 (en) | 2000-06-17 | 2001-06-15 | Nucleic acid accessible hybridization sites |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| AU2001268513A1 true AU2001268513A1 (en) | 2002-01-02 |
Family
ID=22790472
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2001268513A Abandoned AU2001268513A1 (en) | 2000-06-17 | 2001-06-15 | Nucleic acid accessible hybridization sites |
Country Status (3)
| Country | Link |
|---|---|
| US (2) | US7060436B2 (en) |
| AU (1) | AU2001268513A1 (en) |
| WO (1) | WO2001098537A2 (en) |
Families Citing this family (59)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US7101672B2 (en) * | 1998-05-05 | 2006-09-05 | Third Wave Technologies, Inc. | Target-dependent reactions using structure-bridging oligonucleotides |
| US6623920B1 (en) * | 1999-07-09 | 2003-09-23 | Gen-Probe Incorporated | Detection of HIV-1 by nucleic acid amplification |
| US7118860B2 (en) * | 1999-10-29 | 2006-10-10 | Stratagene California | Methods for detection of a target nucleic acid by capture |
| US6984522B2 (en) | 2000-08-03 | 2006-01-10 | Regents Of The University Of Michigan | Isolation and use of solid tumor stem cells |
| US7229774B2 (en) | 2001-08-02 | 2007-06-12 | Regents Of The University Of Michigan | Expression profile of prostate cancer |
| US7094542B2 (en) | 2001-09-18 | 2006-08-22 | Gen-Probe Incorporated | Detection of rpoB sequences of Mycobacterium tuberculosis |
| JP2005532036A (en) | 2002-01-09 | 2005-10-27 | 理化学研究所 | Cancer profile |
| EP1478992A4 (en) * | 2002-02-07 | 2007-03-21 | Univ Utah Res Found | METHOD FOR CREATING AND USING A MEDICAL TREATMENT PROTOCOL |
| US20040024193A1 (en) * | 2002-07-26 | 2004-02-05 | Williams Gregg T. | Method of detecting and quantifying hepatitis C virus |
| US20040076621A1 (en) * | 2002-10-16 | 2004-04-22 | Isis Pharmaceuticals Inc. | Antisense modulation of CD36 expression |
| US20040077567A1 (en) * | 2002-10-16 | 2004-04-22 | Isis Pharmaceuticals Inc. | Antisense modulation of CD36 expression |
| US7312033B2 (en) | 2002-11-14 | 2007-12-25 | Third Wave Technologies, Inc. | CFTR allele detection assays |
| US8206904B2 (en) | 2002-12-18 | 2012-06-26 | Third Wave Technologies, Inc. | Detection of nucleic acids |
| JP4230457B2 (en) | 2002-12-18 | 2009-02-25 | サード・ウェーブ・テクノロジーズ・インク | Detection method of low molecular nucleic acid |
| US7700750B2 (en) | 2003-01-09 | 2010-04-20 | Third Wave Technologies, Inc. | Connexin allele detection assays |
| US20040161749A1 (en) | 2003-01-24 | 2004-08-19 | Hall Jeff G. | 3' end tagged oligonucleotides |
| GB0310270D0 (en) * | 2003-05-03 | 2003-06-11 | Univ Edinburgh | Biomolecular devices |
| EP2003196A3 (en) | 2003-06-09 | 2009-01-07 | The Regents of the University of Michigan | Compositions and methods for treating and diagnosing cancer |
| EP1718771A4 (en) * | 2004-01-02 | 2008-02-13 | Univ Rochester | METHOD FOR IDENTIFYING HAIRPIN DNA PROBES BY PARTIAL FOLDING ANALYSIS |
| US7473773B2 (en) | 2004-01-07 | 2009-01-06 | Third Wave Technologies, Inc. | Determination of hepatitis C virus genotype |
| US8076304B2 (en) | 2004-04-26 | 2011-12-13 | The Regents Of The University Of Colorado | Methods and compositions for the diagnosis and treatment of cyclin A-1 associated conditions |
| US20100152280A1 (en) * | 2004-05-24 | 2010-06-17 | Isis Pharmaceuticals, Inc. | Modulation of sid-1 expression |
| US7858323B2 (en) | 2004-06-09 | 2010-12-28 | The Regents Of The University Of Michigan | Phage microarray profiling of the humoral response to disease |
| US20070015176A1 (en) * | 2005-02-18 | 2007-01-18 | Applera Corporation | Small nucleic acid detection probes and uses thereof |
| US20070020671A1 (en) * | 2005-07-12 | 2007-01-25 | Radtkey Ray R | Method for detecting large mutations and duplications using control amplification comparisons to paralogous genes |
| CA2622295C (en) | 2005-09-12 | 2019-01-15 | The Regents Of The University Of Michigan | Recurrent gene fusions in prostate cancer |
| WO2007035527A2 (en) | 2005-09-15 | 2007-03-29 | Duke University | Non-fouling polymeric surface modification and signal amplification method for biomolecular detection |
| WO2007047907A2 (en) | 2005-10-14 | 2007-04-26 | The Regents Of The University Of Michigan | Dek protein compositions and methods of using the same |
| US7794951B2 (en) | 2005-10-18 | 2010-09-14 | University Of Massachusetts Medical School | SREBP2gc transcription factors and uses thereof |
| US7723477B2 (en) | 2005-10-31 | 2010-05-25 | Oncomed Pharmaceuticals, Inc. | Compositions and methods for inhibiting Wnt-dependent solid tumor cell growth |
| EP2479192A1 (en) | 2005-10-31 | 2012-07-25 | OncoMed Pharmaceuticals, Inc. | Compositions and Methods for Diagnosing and Treating Cancer |
| US7482127B2 (en) | 2005-11-03 | 2009-01-27 | Third Wave Technologies, Inc. | Nucleic acid detection assays employing blocker oligonucleotides |
| EP2522751B1 (en) | 2006-06-01 | 2018-11-21 | Third Wave Technologies, Inc. | Detection of nucleic acids by an improved INVADER assay |
| US7759062B2 (en) | 2006-06-09 | 2010-07-20 | Third Wave Technologies, Inc. | T-structure invasive cleavage assays, consistent nucleic acid dispensing, and low level target nucleic acid detection |
| US7772390B1 (en) | 2006-07-18 | 2010-08-10 | The Regents Of The University Of California | Lipid mediated nucleic acid synthesis |
| US8445238B2 (en) | 2006-10-04 | 2013-05-21 | Third Wave Technologies, Inc. | Snap-back primers and detectable hairpin structures |
| US10745701B2 (en) | 2007-06-28 | 2020-08-18 | The Trustees Of Princeton University | Methods of identifying and treating poor-prognosis cancers |
| US20090324596A1 (en) | 2008-06-30 | 2009-12-31 | The Trustees Of Princeton University | Methods of identifying and treating poor-prognosis cancers |
| EP3018216B1 (en) | 2007-07-06 | 2018-09-12 | The Regents Of The University Of Michigan | Recurrent gene fusions in prostate cancer |
| US8957002B2 (en) | 2007-11-05 | 2015-02-17 | University Of Rochester | DNA microarray having hairpin probes tethered to nanostructured metal surface |
| EP2247741A4 (en) * | 2008-02-03 | 2011-02-23 | Helicos Biosciences Corp | Paired-end reads in sequencing by synthesis |
| JP5651022B2 (en) | 2008-03-15 | 2015-01-07 | ホロジック，インコーポレーテッド | Compositions and methods for analyzing nucleic acid molecules in amplification reactions |
| US8796184B2 (en) | 2008-03-28 | 2014-08-05 | Sentilus, Inc. | Detection assay devices and methods of making and using the same |
| BRPI0919473A2 (en) | 2008-09-26 | 2017-08-29 | Oncomed Pharm Inc | FRIZZLED BINDING AGENTS AND THEIR USES |
| TWI535445B (en) | 2010-01-12 | 2016-06-01 | 安可美德藥物股份有限公司 | Wnt antagonists and methods of treatment and screening |
| EP3450979A3 (en) | 2010-03-17 | 2019-04-24 | The Regents of The University of Michigan | Using phage epitopes to profile the immune response |
| CA2794674A1 (en) | 2010-04-01 | 2011-10-06 | Oncomed Pharmaceuticals, Inc. | Frizzled-binding agents and uses thereof |
| US8916344B2 (en) | 2010-11-15 | 2014-12-23 | Exact Sciences Corporation | Methylation assay |
| US8715937B2 (en) | 2010-11-15 | 2014-05-06 | Exact Sciences Corporation | Mutation detection assay |
| US8361720B2 (en) | 2010-11-15 | 2013-01-29 | Exact Sciences Corporation | Real time cleavage assay |
| WO2013001372A2 (en) | 2011-06-30 | 2013-01-03 | University Of Oslo | Methods and compositions for inhibition of activation of regulatory t cells |
| MX340536B (en) | 2011-07-06 | 2016-07-13 | Sykehuset Sorlandet Hf | Egfr targeted therapy. |
| WO2013058868A2 (en) | 2011-10-18 | 2013-04-25 | Exact Sciences Corporation | Multiplexed kras mutation detection assay |
| CN104768579A (en) | 2012-10-23 | 2015-07-08 | 昂科梅德制药有限公司 | Methods of treating neuroendocrine tumors using Wnt pathway-binding agents |
| US20150320861A1 (en) | 2012-12-21 | 2015-11-12 | Sykehuset Sørlandet Hf | Egfr targeted therapy of neurological disorders and pain |
| CN105073195A (en) | 2013-02-04 | 2015-11-18 | 昂科梅德制药有限公司 | Methods of treatment with Wnt pathway inhibitors and monitoring of the treatment |
| US9168300B2 (en) | 2013-03-14 | 2015-10-27 | Oncomed Pharmaceuticals, Inc. | MET-binding agents and uses thereof |
| WO2014158628A1 (en) | 2013-03-14 | 2014-10-02 | Hologic, Inc. | Compositions and methods for analysis of nucleic acid molecules |
| CN111118119B (en) * | 2019-12-18 | 2023-09-26 | 杭州瑞普基因科技有限公司 | Method for enriching and detecting target mutations using base mismatch blockers |
Family Cites Families (25)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5541308A (en) * | 1986-11-24 | 1996-07-30 | Gen-Probe Incorporated | Nucleic acid probes for detection and/or quantitation of non-viral organisms |
| US5712088A (en) * | 1987-11-18 | 1998-01-27 | Chiron Corporation | Methods for detecting Hepatitis C virus using polynucleotides specific for same |
| GB8822228D0 (en) | 1988-09-21 | 1988-10-26 | Southern E M | Support-bound oligonucleotides |
| US5427930A (en) | 1990-01-26 | 1995-06-27 | Abbott Laboratories | Amplification of target nucleic acids using gap filling ligase chain reaction |
| US5494810A (en) | 1990-05-03 | 1996-02-27 | Cornell Research Foundation, Inc. | Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease |
| US5846717A (en) | 1996-01-24 | 1998-12-08 | Third Wave Technologies, Inc. | Detection of nucleic acid sequences by invader-directed cleavage |
| US5994069A (en) | 1996-01-24 | 1999-11-30 | Third Wave Technologies, Inc. | Detection of nucleic acids by multiple sequential invasive cleavages |
| WO1997027214A1 (en) | 1996-01-24 | 1997-07-31 | Third Wave Technologies, Inc. | Invasive cleavage of nucleic acids |
| JP3907201B2 (en) * | 1991-12-23 | 2007-04-18 | カイロン コーポレイション | HIV probe for use in solution phase sandwich hybridization assays |
| US5422253A (en) | 1992-12-07 | 1995-06-06 | Wisconsin Alumni Research Foundation | Method of site specific nucleic acid cleavage |
| US5843654A (en) | 1992-12-07 | 1998-12-01 | Third Wave Technologies, Inc. | Rapid detection of mutations in the p53 gene |
| US6372424B1 (en) | 1995-08-30 | 2002-04-16 | Third Wave Technologies, Inc | Rapid detection and identification of pathogens |
| US5429807A (en) | 1993-10-28 | 1995-07-04 | Beckman Instruments, Inc. | Method and apparatus for creating biopolymer arrays on a solid support surface |
| US5712095A (en) * | 1994-06-16 | 1998-01-27 | Becton Dickinson And Company | Rapid and sensitive detection of antibiotic-resistant mycobacteria using oligonucleotide probes specific for ribosomal RNA precursors |
| CA2203627C (en) | 1994-11-09 | 2000-06-06 | James E. Dahlberg | Rapid detection and identification of nucleic acid variants and pathogens |
| US5599695A (en) | 1995-02-27 | 1997-02-04 | Affymetrix, Inc. | Printing molecular library arrays using deprotection agents solely in the vapor phase |
| US5985557A (en) | 1996-01-24 | 1999-11-16 | Third Wave Technologies, Inc. | Invasive cleavage of nucleic acids |
| US5962226A (en) | 1996-11-26 | 1999-10-05 | Incyte Pharmaceuticals, Inc. | Human RNA-binding protein |
| US5846723A (en) * | 1996-12-20 | 1998-12-08 | Geron Corporation | Methods for detecting the RNA component of telomerase |
| US6046004A (en) * | 1997-02-27 | 2000-04-04 | Lorne Park Research, Inc. | Solution hybridization of nucleic acids with antisense probes having modified backbones |
| WO1999007890A1 (en) * | 1997-08-05 | 1999-02-18 | University Of Massachusetts | Nucleic acid isolation, quantitation, and structure probing |
| WO1999009154A2 (en) * | 1997-08-19 | 1999-02-25 | Hybridon, Inc. | Novel hiv-specific synthetic oligonucleotides and methods of their use |
| US6511803B1 (en) * | 1997-10-10 | 2003-01-28 | President And Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
| US6204026B1 (en) * | 1997-11-05 | 2001-03-20 | The Board Of Trustees Of The University Of Arkansas | Detection of M. tuberculosis complex via reverse transcriptase SDA |
| US6060310A (en) | 1997-11-24 | 2000-05-09 | The United States Of America As Represented By The Department Of Health And Human Services | Transcription factor decoy and tumor growth inhibitor |
-
2001
- 2001-06-15 US US09/882,945 patent/US7060436B2/en not_active Expired - Lifetime
- 2001-06-15 WO PCT/US2001/019401 patent/WO2001098537A2/en not_active Ceased
- 2001-06-15 AU AU2001268513A patent/AU2001268513A1/en not_active Abandoned
-
2004
- 2004-03-23 US US10/807,114 patent/US20040235024A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| US20040235024A1 (en) | 2004-11-25 |
| US7060436B2 (en) | 2006-06-13 |
| WO2001098537A2 (en) | 2001-12-27 |
| WO2001098537A3 (en) | 2003-10-16 |
| US20030143535A1 (en) | 2003-07-31 |
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