NZ616926B2 - Diazonamide analogs - Google Patents
Diazonamide analogs Download PDFInfo
- Publication number
- NZ616926B2 NZ616926B2 NZ616926A NZ61692612A NZ616926B2 NZ 616926 B2 NZ616926 B2 NZ 616926B2 NZ 616926 A NZ616926 A NZ 616926A NZ 61692612 A NZ61692612 A NZ 61692612A NZ 616926 B2 NZ616926 B2 NZ 616926B2
- Authority
- NZ
- New Zealand
- Prior art keywords
- coome
- mmol
- oxazole
- ome
- plh
- Prior art date
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- 229930188453 diazonamide Natural products 0.000 title description 8
- 150000001875 compounds Chemical class 0.000 claims abstract description 96
- 125000001160 methoxycarbonyl group Chemical group [H]C([H])([H])OC(*)=O 0.000 claims description 82
- 125000001424 substituent group Chemical group 0.000 claims description 42
- 150000003839 salts Chemical class 0.000 claims description 39
- ZCQWOFVYLHDMMC-UHFFFAOYSA-N Oxazole Chemical compound C1=COC=N1 ZCQWOFVYLHDMMC-UHFFFAOYSA-N 0.000 claims description 31
- 150000001412 amines Chemical class 0.000 claims description 19
- 125000000623 heterocyclic group Chemical group 0.000 claims description 17
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 claims description 15
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical group CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 13
- 125000004093 cyano group Chemical group *C#N 0.000 claims description 12
- 150000002148 esters Chemical class 0.000 claims description 11
- 239000003814 drug Substances 0.000 claims description 9
- 229940079593 drug Drugs 0.000 claims description 8
- 239000008194 pharmaceutical composition Substances 0.000 claims description 8
- 238000003786 synthesis reaction Methods 0.000 claims description 8
- 230000015572 biosynthetic process Effects 0.000 claims description 7
- 150000002916 oxazoles Chemical class 0.000 claims description 7
- 102100034051 Heat shock protein HSP 90-alpha Human genes 0.000 claims description 6
- 101001016865 Homo sapiens Heat shock protein HSP 90-alpha Proteins 0.000 claims description 6
- 125000000738 acetamido group Chemical group [H]C([H])([H])C(=O)N([H])[*] 0.000 claims description 6
- 125000004170 methylsulfonyl group Chemical group [H]C([H])([H])S(*)(=O)=O 0.000 claims description 6
- 239000000546 pharmaceutical excipient Substances 0.000 claims description 6
- 239000002246 antineoplastic agent Substances 0.000 claims description 5
- 239000003112 inhibitor Substances 0.000 claims description 5
- 101710183280 Topoisomerase Proteins 0.000 claims description 4
- 150000001408 amides Chemical class 0.000 claims description 4
- 229940124530 sulfonamide Drugs 0.000 claims description 4
- 150000003456 sulfonamides Chemical class 0.000 claims description 4
- 229940044683 chemotherapy drug Drugs 0.000 claims description 3
- 239000002552 dosage form Substances 0.000 claims description 3
- KXDHJXZQYSOELW-UHFFFAOYSA-M Carbamate Chemical compound NC([O-])=O KXDHJXZQYSOELW-UHFFFAOYSA-M 0.000 claims description 2
- 239000013543 active substance Substances 0.000 claims description 2
- 150000002576 ketones Chemical class 0.000 claims description 2
- 229940043355 kinase inhibitor Drugs 0.000 claims description 2
- 231100000782 microtubule inhibitor Toxicity 0.000 claims description 2
- 239000003757 phosphotransferase inhibitor Substances 0.000 claims description 2
- 125000001493 tyrosinyl group Chemical group [H]OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])(N([H])[H])C(*)=O 0.000 claims description 2
- XXJGBENTLXFVFI-UHFFFAOYSA-N 1-amino-methylene Chemical compound N[CH2] XXJGBENTLXFVFI-UHFFFAOYSA-N 0.000 claims 2
- CBOIHMRHGLHBPB-UHFFFAOYSA-N hydroxymethyl Chemical compound O[CH2] CBOIHMRHGLHBPB-UHFFFAOYSA-N 0.000 claims 2
- 125000003387 indolinyl group Chemical group N1(CCC2=CC=CC=C12)* 0.000 claims 2
- 125000004492 methyl ester group Chemical group 0.000 claims 2
- MZOFCQQQCNRIBI-VMXHOPILSA-N (3s)-4-[[(2s)-1-[[(2s)-1-[[(1s)-1-carboxy-2-hydroxyethyl]amino]-4-methyl-1-oxopentan-2-yl]amino]-5-(diaminomethylideneamino)-1-oxopentan-2-yl]amino]-3-[[2-[[(2s)-2,6-diaminohexanoyl]amino]acetyl]amino]-4-oxobutanoic acid Chemical compound OC[C@@H](C(O)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN=C(N)N)NC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@@H](N)CCCCN MZOFCQQQCNRIBI-VMXHOPILSA-N 0.000 claims 1
- AWGBKZRMLNVLAF-UHFFFAOYSA-N 3,5-dibromo-n,2-dihydroxybenzamide Chemical compound ONC(=O)C1=CC(Br)=CC(Br)=C1O AWGBKZRMLNVLAF-UHFFFAOYSA-N 0.000 claims 1
- 102000004083 Lymphotoxin-alpha Human genes 0.000 claims 1
- 108090000542 Lymphotoxin-alpha Proteins 0.000 claims 1
- 108060008682 Tumor Necrosis Factor Proteins 0.000 claims 1
- 102000000852 Tumor Necrosis Factor-alpha Human genes 0.000 claims 1
- 230000000340 anti-metabolite Effects 0.000 claims 1
- 229940100197 antimetabolite Drugs 0.000 claims 1
- 239000002256 antimetabolite Substances 0.000 claims 1
- 239000000138 intercalating agent Substances 0.000 claims 1
- 125000000468 ketone group Chemical group 0.000 claims 1
- -1 diazonamide A analogue compounds Chemical class 0.000 abstract description 48
- 206010028980 Neoplasm Diseases 0.000 abstract description 29
- 238000011282 treatment Methods 0.000 abstract description 13
- 201000011510 cancer Diseases 0.000 abstract description 9
- 230000000394 mitotic effect Effects 0.000 abstract description 2
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 201
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 134
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 102
- 235000019439 ethyl acetate Nutrition 0.000 description 96
- 238000006243 chemical reaction Methods 0.000 description 84
- 239000011541 reaction mixture Substances 0.000 description 79
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical class [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 72
- 125000000217 alkyl group Chemical group 0.000 description 67
- 239000000203 mixture Substances 0.000 description 65
- JGFZNNIVVJXRND-UHFFFAOYSA-N N,N-Diisopropylethylamine (DIPEA) Chemical compound CCN(C(C)C)C(C)C JGFZNNIVVJXRND-UHFFFAOYSA-N 0.000 description 48
- 239000012267 brine Substances 0.000 description 46
- HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 46
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 41
- 125000003118 aryl group Chemical group 0.000 description 39
- 239000000243 solution Substances 0.000 description 39
- KDLHZDBZIXYQEI-UHFFFAOYSA-N Palladium Chemical compound [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 description 38
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- NPZTUJOABDZTLV-UHFFFAOYSA-N hydroxybenzotriazole Substances O=C1C=CC=C2NNN=C12 NPZTUJOABDZTLV-UHFFFAOYSA-N 0.000 description 32
- WBHQBSYUUJJSRZ-UHFFFAOYSA-M sodium bisulfate Chemical compound [Na+].OS([O-])(=O)=O WBHQBSYUUJJSRZ-UHFFFAOYSA-M 0.000 description 32
- 229910000342 sodium bisulfate Inorganic materials 0.000 description 32
- 238000004895 liquid chromatography mass spectrometry Methods 0.000 description 30
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- 235000017557 sodium bicarbonate Nutrition 0.000 description 25
- 229910000030 sodium bicarbonate Inorganic materials 0.000 description 25
- 125000003710 aryl alkyl group Chemical group 0.000 description 24
- 239000000463 material Substances 0.000 description 24
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 23
- 125000001584 benzyloxycarbonyl group Chemical group C(=O)(OCC1=CC=CC=C1)* 0.000 description 23
- 239000008346 aqueous phase Substances 0.000 description 22
- 229920006395 saturated elastomer Polymers 0.000 description 21
- 125000005842 heteroatom Chemical group 0.000 description 20
- 239000000047 product Substances 0.000 description 19
- 239000007858 starting material Substances 0.000 description 19
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 18
- 229910052799 carbon Inorganic materials 0.000 description 18
- 125000001072 heteroaryl group Chemical group 0.000 description 18
- 125000002252 acyl group Chemical group 0.000 description 17
- 125000003342 alkenyl group Chemical group 0.000 description 17
- 125000000304 alkynyl group Chemical group 0.000 description 17
- 125000004429 atom Chemical group 0.000 description 17
- 239000000706 filtrate Substances 0.000 description 17
- 125000005843 halogen group Chemical group 0.000 description 17
- 125000004404 heteroalkyl group Chemical group 0.000 description 17
- CSCPPACGZOOCGX-UHFFFAOYSA-N Acetone Chemical compound CC(C)=O CSCPPACGZOOCGX-UHFFFAOYSA-N 0.000 description 15
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 15
- 238000003818 flash chromatography Methods 0.000 description 15
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 description 15
- 229910052717 sulfur Inorganic materials 0.000 description 15
- 125000002947 alkylene group Chemical group 0.000 description 14
- 125000004446 heteroarylalkyl group Chemical group 0.000 description 14
- 229910052739 hydrogen Inorganic materials 0.000 description 14
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 description 14
- 239000002904 solvent Substances 0.000 description 14
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 14
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 13
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- 229910052757 nitrogen Inorganic materials 0.000 description 13
- 229910052760 oxygen Inorganic materials 0.000 description 13
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 12
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- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 description 12
- RWRDLPDLKQPQOW-UHFFFAOYSA-N Pyrrolidine Chemical compound C1CCNC1 RWRDLPDLKQPQOW-UHFFFAOYSA-N 0.000 description 12
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- 125000000896 monocarboxylic acid group Chemical group 0.000 description 11
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- APOYTRAZFJURPB-UHFFFAOYSA-N 2-methoxy-n-(2-methoxyethyl)-n-(trifluoro-$l^{4}-sulfanyl)ethanamine Chemical compound COCCN(S(F)(F)F)CCOC APOYTRAZFJURPB-UHFFFAOYSA-N 0.000 description 10
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- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 8
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- NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 8
- QGZKDVFQNNGYKY-UHFFFAOYSA-N ammonia Natural products N QGZKDVFQNNGYKY-UHFFFAOYSA-N 0.000 description 8
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- IJOOHPMOJXWVHK-UHFFFAOYSA-N chlorotrimethylsilane Chemical compound C[Si](C)(C)Cl IJOOHPMOJXWVHK-UHFFFAOYSA-N 0.000 description 8
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- 125000006742 (C6-C20) heteroarylalkyl group Chemical group 0.000 description 3
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- 125000001567 quinoxalinyl group Chemical group N1=C(C=NC2=CC=CC=C12)* 0.000 description 1
- 230000005855 radiation Effects 0.000 description 1
- 238000001959 radiotherapy Methods 0.000 description 1
- 102000005962 receptors Human genes 0.000 description 1
- 108020003175 receptors Proteins 0.000 description 1
- 210000000664 rectum Anatomy 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 238000012552 review Methods 0.000 description 1
- ATEBXHFBFRCZMA-VXTBVIBXSA-N rifabutin Chemical class O([C@](C1=O)(C)O/C=C/[C@@H]([C@H]([C@@H](OC(C)=O)[C@H](C)[C@H](O)[C@H](C)[C@@H](O)[C@@H](C)\C=C\C=C(C)/C(=O)NC(=C2N3)C(=O)C=4C(O)=C5C)C)OC)C5=C1C=4C2=NC13CCN(CC(C)C)CC1 ATEBXHFBFRCZMA-VXTBVIBXSA-N 0.000 description 1
- 238000007363 ring formation reaction Methods 0.000 description 1
- 125000002914 sec-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- 239000011734 sodium Substances 0.000 description 1
- 229940035044 sorbitan monolaurate Drugs 0.000 description 1
- 230000000087 stabilizing effect Effects 0.000 description 1
- HKSZLNNOFSGOKW-FYTWVXJKSA-N staurosporine Chemical compound C12=C3N4C5=CC=CC=C5C3=C3CNC(=O)C3=C2C2=CC=CC=C2N1[C@H]1C[C@@H](NC)[C@@H](OC)[C@]4(C)O1 HKSZLNNOFSGOKW-FYTWVXJKSA-N 0.000 description 1
- 210000000130 stem cell Anatomy 0.000 description 1
- 238000010254 subcutaneous injection Methods 0.000 description 1
- 239000007929 subcutaneous injection Substances 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- KZNICNPSHKQLFF-UHFFFAOYSA-N succinimide Chemical class O=C1CCC(=O)N1 KZNICNPSHKQLFF-UHFFFAOYSA-N 0.000 description 1
- 150000003871 sulfonates Chemical class 0.000 description 1
- 150000003457 sulfones Chemical class 0.000 description 1
- 150000003467 sulfuric acid derivatives Chemical class 0.000 description 1
- 230000004083 survival effect Effects 0.000 description 1
- 238000013268 sustained release Methods 0.000 description 1
- 239000012730 sustained-release form Substances 0.000 description 1
- 208000024891 symptom Diseases 0.000 description 1
- 239000006188 syrup Substances 0.000 description 1
- 235000020357 syrup Nutrition 0.000 description 1
- 239000003826 tablet Substances 0.000 description 1
- 239000011975 tartaric acid Substances 0.000 description 1
- 235000002906 tartaric acid Nutrition 0.000 description 1
- RCINICONZNJXQF-MZXODVADSA-N taxol Chemical compound O([C@@H]1[C@@]2(C[C@@H](C(C)=C(C2(C)C)[C@H](C([C@]2(C)[C@@H](O)C[C@H]3OC[C@]3([C@H]21)OC(C)=O)=O)OC(=O)C)OC(=O)[C@H](O)[C@@H](NC(=O)C=1C=CC=CC=1)C=1C=CC=CC=1)O)C(=O)C1=CC=CC=C1 RCINICONZNJXQF-MZXODVADSA-N 0.000 description 1
- RCINICONZNJXQF-XAZOAEDWSA-N taxol® Chemical compound O([C@@H]1[C@@]2(CC(C(C)=C(C2(C)C)[C@H](C([C@]2(C)[C@@H](O)C[C@H]3OC[C@]3(C21)OC(C)=O)=O)OC(=O)C)OC(=O)[C@H](O)[C@@H](NC(=O)C=1C=CC=CC=1)C=1C=CC=CC=1)O)C(=O)C1=CC=CC=C1 RCINICONZNJXQF-XAZOAEDWSA-N 0.000 description 1
- 229960001278 teniposide Drugs 0.000 description 1
- 125000001981 tert-butyldimethylsilyl group Chemical group [H]C([H])([H])[Si]([H])(C([H])([H])[H])[*]C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 125000005931 tert-butyloxycarbonyl group Chemical group [H]C([H])([H])C(OC(*)=O)(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
- 210000001550 testis Anatomy 0.000 description 1
- YLQBMQCUIZJEEH-UHFFFAOYSA-N tetrahydrofuran Natural products C=1C=COC=1 YLQBMQCUIZJEEH-UHFFFAOYSA-N 0.000 description 1
- 125000001712 tetrahydronaphthyl group Chemical group C1(CCCC2=CC=CC=C12)* 0.000 description 1
- RAOIDOHSFRTOEL-UHFFFAOYSA-N tetrahydrothiophene Chemical compound C1CCSC1 RAOIDOHSFRTOEL-UHFFFAOYSA-N 0.000 description 1
- CXWXQJXEFPUFDZ-UHFFFAOYSA-N tetralin Chemical compound C1=CC=C2CCCCC2=C1 CXWXQJXEFPUFDZ-UHFFFAOYSA-N 0.000 description 1
- 150000003536 tetrazoles Chemical class 0.000 description 1
- 229940124597 therapeutic agent Drugs 0.000 description 1
- 230000001225 therapeutic effect Effects 0.000 description 1
- 230000004797 therapeutic response Effects 0.000 description 1
- 125000001113 thiadiazolyl group Chemical group 0.000 description 1
- 125000000335 thiazolyl group Chemical group 0.000 description 1
- 125000001544 thienyl group Chemical group 0.000 description 1
- 238000011200 topical administration Methods 0.000 description 1
- UCFGDBYHRUNTLO-QHCPKHFHSA-N topotecan Chemical compound C1=C(O)C(CN(C)C)=C2C=C(CN3C4=CC5=C(C3=O)COC(=O)[C@]5(O)CC)C4=NC2=C1 UCFGDBYHRUNTLO-QHCPKHFHSA-N 0.000 description 1
- 229960000303 topotecan Drugs 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 125000004306 triazinyl group Chemical group 0.000 description 1
- 125000001425 triazolyl group Chemical group 0.000 description 1
- ITMCEJHCFYSIIV-UHFFFAOYSA-M triflate Chemical compound [O-]S(=O)(=O)C(F)(F)F ITMCEJHCFYSIIV-UHFFFAOYSA-M 0.000 description 1
- 125000000025 triisopropylsilyl group Chemical group C(C)(C)[Si](C(C)C)(C(C)C)* 0.000 description 1
- 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
- 230000035899 viability Effects 0.000 description 1
- OGWKCGZFUXNPDA-XQKSVPLYSA-N vincristine Chemical compound C([N@]1C[C@@H](C[C@]2(C(=O)OC)C=3C(=CC4=C([C@]56[C@H]([C@@]([C@H](OC(C)=O)[C@]7(CC)C=CCN([C@H]67)CC5)(O)C(=O)OC)N4C=O)C=3)OC)C[C@@](C1)(O)CC)CC1=C2NC2=CC=CC=C12 OGWKCGZFUXNPDA-XQKSVPLYSA-N 0.000 description 1
- 229960004528 vincristine Drugs 0.000 description 1
- OGWKCGZFUXNPDA-UHFFFAOYSA-N vincristine Natural products C1C(CC)(O)CC(CC2(C(=O)OC)C=3C(=CC4=C(C56C(C(C(OC(C)=O)C7(CC)C=CCN(C67)CC5)(O)C(=O)OC)N4C=O)C=3)OC)CN1CCC1=C2NC2=CC=CC=C12 OGWKCGZFUXNPDA-UHFFFAOYSA-N 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
- 238000009736 wetting Methods 0.000 description 1
Classifications
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/33—Heterocyclic compounds
- A61K31/395—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
- A61K31/41—Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
- A61K31/42—Oxazoles
- A61K31/424—Oxazoles condensed with heterocyclic ring systems, e.g. clavulanic acid
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/02—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
- C07D491/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
- C07D498/06—Peri-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/02—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
- C07D498/08—Bridged systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/12—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains three hetero rings
- C07D498/20—Spiro-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D498/00—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D498/22—Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains four or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic Table
- C07F9/02—Phosphorus compounds
- C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
- C07F9/6561—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings
Abstract
Provided are macrocyclic diazonamide A analogue compounds of the general formula (I), wherein the variables are as defined in the specification. The compounds disrupt the mitotic spindle. The compounds may be useful in the treatment of cancer.
Description
Diazonamide Analogs
Technical Field
The invention relates to diazonamide s of formula (I), and to salts,
pharmaceutical compositions, and conjugates thereof, which are useful as anti—proliferative
agents.
Introduction
Diazonamide A is a mitotic spindle—disrupting agent first isolated from the marine
organism Diazona angulata, having the structure:
The preparation of diazonamide analogs via macrocyclic indoline intermediates
bearing a carbobenzyloxy (Cbz) or o—nitrophenylsulfonyl protected amino group has been
previously described. US 7,022,720 and US 7,517,895 correctly disclose the structure of
diazonamide A and describe the synthesis of some of its analogs. US 7,851,620 (continued
with US Ser No. 12/896,898) describes synthetic s for the preparation of diazonamide
analogs via indoline intermediates. US 7,538,129 describes diazonamide A s. US Ser
No. 12/432,615 is a related g application disclosing indoline, which lack the rigid
yclic structure bridging the A— and E—rings of the diazonamide skeleton. Disclosed
here are compounds of formula (I) and additional novel diazonamide analogs which possess
potent cytotoxic activity and are useful for the treatment of cell proliferative disorders.
Summary of the Invention
The present invention is directed towards compounds of formula (I) and
pharmaceutically acceptable salts and conjugates f, pharmaceutical compositions
comprising a compound of formula (1) and/or a salt or conjugate thereof, modified forms of
such compounds ated to stabilizing or targeting , and methods of making and
using these compounds and formulations, wherein formula (I) is:
or a pharmaceutically able salt or conjugate thereof;
wherein:
R1 is optionally substituted Cl—C4 alkyl;
R2 is H, or optionally substituted Cl—C4 alkyl;
R3 is Cl—C12 alkyl, Cl—C12 heteroalkyl, C2—C12 alkenyl, C2—C12 heteroalkenyl, C3—C8
cycloalkyl, C3—C8 heterocyclyl, C4—C12 cycloalkylalkyl, C4—C12 heterocyclylalkyl, C6—C12
aryl, C5—C12 heteroaryl, C7—Cl4 arylalkyl, or C6—Cl4 heteroarylalkyl, each of which may be
optionally substituted;
R4 is H, or optionally substituted Cl—C4 alkyl;
R5 is optionally substituted C6—C12 aryl or optionally substituted C5—C12 aryl;
R6 is H, or optionally substituted Cl—C4 alkyl;
each Y and Y’ is independently halo, OH, Cl—C4 alkoxy, or Cl—C8 alkyl, C2—C8 alkenyl, C2—
C8 alkynyl, C6—C12 aryl, or C7—Cl4 arylalkyl, or a heteroform of one of these, each of which
may be ally tuted;
m is 0—4; and
m’ is 0—3.
The invention asses all combinations of various preferred
embodiments/substitutions of formula (I) described herein.
In a further aspect, the invention provides a pharmaceutical composition comprising
at least one compound of formula (I) or a disclosed embodiment thereof, and a
pharmaceutically acceptable excipient.
In some embodiments, the compound of a (I) or a disclosed embodiment
thereof is a compound in one of the Tables provided herein, or a ceutically acceptable
salt or conjugate of one of these compounds.
In another aspect, the invention provides a method for treating or ameliorating a cell
proliferative disorder, comprising administering to a subject in need thereof a therapeutically
effective amount of at least one compound of formula (I) or a sed embodiment thereof
WO 45255
or a salt, conjugate, or pharmaceutical composition thereof. In some embodiments, the
amount stered is sufficient to inhibit cell proliferation. In other embodiments, the
amount is sufficient to slow tumor growth or reduce tumor size. In some embodiments, the
compound of formula (I) or a disclosed embodiment thereof is used in combination with
another chemotherapeutic agent or approach.
Provided also are methods for inhibiting cell proliferation in a cell, comprising
contacting the cell with a compound of one of the formula described herein, or a salt, or
conjugate thereof, in an amount effective to inhibit cell proliferation. In some embodiments,
the cells are in a cell line, such as a cancer cell line (e.g., a cell line derived from breast,
prostate, pancreatic, lung, or poietic cancers, etc.). In some embodiments, the cells are
in a tissue, an in some such embodiments, the tissue can be in a subject. In other
ments, the cells are in a tumor, and sometimes are in a tumor in a t.
Provided also are methods for treating cancer in a subject in need of such treatment,
comprising: administering to the subject a therapeutically effective amount of a compound of
formula (I) or a disclosed embodiment thereof or a salt or conjugate thereof, as bed
herein, in an amount that is effective to treat or ameliorate said cancer.
The ion further provides methods for treating or ameliorating a condition
related to aberrant cell proliferation. For example, provided are methods of treating or
ameliorating a cell proliferative disorder in a subject, comprising administering a compound
of formula (I) or a disclosed embodiment thereof or a salt or conjugate thereof, as bed
herein, to a subject in need thereof in an amount effective to treat or ameliorate the condition.
In the methods described herein, the subject may be a research animal (e. g., ,
dog, cat, monkey), optionally containing a tumor such as a xenograft tumor (e. g., human
, for example, or may be a human.
Brief Description of the Figures
Figure 1 shows data for subject compounds in an HCC46l human lung carcinoma
xenograft model in mice.
Figure 2 shows data for subject compounds in a a pancreatic cancer
xenograft model in mice.
Detailed Description of Particular Embodiments
The present invention may be understood more readily by reference to the following
ed description of the preferred embodiments of the invention and the Examples included
herein. It is to be understood that the terminology used herein is for the purpose of describing
specific embodiments only and is not intended to be ng. It is further to be understood
that unless specifically defined herein, the terminology used herein is to be given its
ional g as known in the relevant art.
As used , the singular forms 4‘ 77 4‘
, an”, and “the” include plural references
unless indicated otherwise.
As used herein, the term “subject” refers to a human or animal subject. In preferred
embodiments, the subject is human.
The terms “treat”, ing" or "treatment" in reference to a particular disease or
disorder include prevention of the disease or disorder, and/or lessening, ing,
ameliorating, alleviating or removing the symptoms and/or pathology of the disease or
disorder.
The term "therapeutically effective amount" or “effective amount” is intended to
mean that amount of a drug or pharmaceutical agent that will elicit a ical or medical
response of a cell, tissue, system, animal or human that is being sought by a researcher,
narian, l doctor or other clinician. The terms also can refer to reducing or
stopping a cell proliferation rate (e. g., slowing or halting tumor growth) or ng the
number of erating cancer cells (e. g., removing part or all of a tumor). Sometimes, the
rate or cell proliferation is reduced by 10%, 20%, 30%, 40%, 50%, 60%, or 70% or more.
Sometimes, the number of proliferating cells is reduced by 10%, 20%, 30%, 40%, 50%, 60%,
or 70% or more.
As used herein, the terms “alkyl,” “alkenyl” and “alkynyl” include straight—chain,
branched—chain and cyclic monovalent hydrocarbyl radicals, and combinations of these,
which contain only C and H when they are unsubstituted. Examples include methyl, ethyl,
isopropyl, isobutyl, utyl, cyclohexyl, cyclopentylethyl, 2—propenyl, 3—butynyl, and the
like. The total number of carbon atoms in each such group is sometimes described herein,
e.g., when the group can contain up to twelve carbon atoms it may be described as l—12C or
as Cl—C12 or as Cl—12 or as C142. When heteroatoms (typically N, O and S) are allowed to
replace carbon atoms of an alkyl, alkenyl or alkynyl group, as in heteroalkyl groups, for
example, the numbers describing the group, though still written as e.g. Cl—C6, represent the
sum of the number of carbon atoms in the group plus the number of such heteroatoms that are
included as replacements for carbon atoms in the ring or chain being bed.
lly, the alkyl, alkenyl and alkynyl substituents of the invention contain l—12C
(alkyl) or 2—12C (alkenyl or alkynyl). Preferably they contain l—8C (alkyl) or 2—8C (alkenyl
WO 45255 2012/033715
or alkynyl). Sometimes they contain l—4C (alkyl) or 2—4C (alkenyl or alkynyl). A single
group can include more than one type of multiple bond, or more than one multiple bond; such
groups are included within the definition of the term “alkenyl” when they contain at least one
carbon—carbon double bond, and they are included within the term “alkynyl” when they
contain at least one carbon—carbon triple bond.
“Heteroalkyl”, “heteroalkenyl”, and “heteroalkynyl” and the like are defined
similarly to the corresponding hydrocarbyl (alkyl, alkenyl and alkynyl) groups, but the
‘hetero’ terms refer to groups that contain one or more heteroatoms selected from O, S and N
and combinations thereof, within the backbone residue; thus at least one carbon atom of a
corresponding alkyl, alkenyl, or alkynyl group is replaced by one of the specified
heteroatoms to form a heteroalkyl, heteroalkenyl, or heteroalkynyl group. Preferably, each
heteroalkyl, heteroalkenyl and heteroalkynyl group ns only l—2 heteroatoms as part of
the skeleton of backbone of the heteroalkyl group, i.e., not including substituents that may be
t. Hence, heteroalkyls include ls such as O—alkyl, alkyl ethers, secondary and
tertiary alkyl amines, alkyl sulfides, alkyl yls, and the like.
The typical and preferred sizes for heteroforms of alkyl, alkenyl and alkynyl groups
are generally the same as for the corresponding hydrocarbyl groups, and the substituents that
may be present on the heteroforms are the same as those bed above for the hydrocarbyl
. Where such groups contain N, the nitrogen atom may be present as NH or it may be
substituted if the heteroalkyl or similar group is described as ally substituted. Where
such groups contain S, the sulfur atom may optionally be oxidized to SO or S02 unless
otherwise indicated. For reasons of chemical stability, it is also tood that, unless
ise specified, such groups do not include more than three contiguous atoms as
part of the alkyl chain, although an oxo group may be present on N or S as in a nitro or
sulfonyl group. Thus —C(O)NH2 can be a C2 heteroalkyl group substituted with =0; and —
SOZNH— can be a C2 heteroalkylene, where S replaces one carbon, N replaces one carbon,
and S is substituted with two =0 groups.
While “alkyl” as used herein includes cycloalkyl and cycloalkylalkyl groups, the
term “cycloalkyl” may be used herein to specifically describe a saturated or partially
saturated, monocyclic or fused or spiro polycyclic, carbocycle that is connected Via a ring
carbon atom, and “cycloalkylalkyl” may be used to describe a carbocyclic non—aromatic
group that is connected to the base molecule through an alkyl linker. Similarly,
“heterocyclyl” may be used to describe a non—aromatic cyclic group that contains at least one
atom as a ring member and that is connected to the molecule Via a ring atom of the
cyclic group, which may be C or N; and “heterocyclylalkyl” may be used to describe such a
group that is connected to another molecule through an alkyl . The sizes and
substituents that are suitable for the cycloalkyl, cycloalkylalkyl, heterocyclyl, and
heterocyclylalkyl groups are the same as those described above for alkyl groups. Frequently,
cycloalkyl and heterocyclyl groups are C3—C8, and cycloalkylalkyl or cyclylalkyl
groups are C4—C12. The size of a cycloalkylalkyl or heterocyclylalkyl group describes the
total number of carbon atoms or of carbon atoms plus heteroatoms that e carbon atoms
of an alkyl, alkenyl, l, cycloalkyl, or lkylalkyl portion. As used , these
terms also include rings that n a double bond or two, as long as the ring is not aromatic.
As used herein, “acyl” encompasses groups comprising an alkyl, alkenyl, alkynyl,
aryl or arylalkyl radical attached at one of the two available valence ons of a yl
carbon atom (which may be depicted herein as —C(=O)R, —C(O)R, or COR) where R is an
alkyl, l, alkynyl, aryl, or arylalkyl group, and heteroacyl refers to the corresponding
groups wherein at least one carbon other than the carbonyl carbon has been replaced by a
heteroatom chosen from N, O and S. Thus heteroacyl includes, for example, —C(=O)OR and
—C(=O)NR2 as well as —C(=O)—heteroaryl. Also included within the definition of heteroacyl
groups are thioacyl substituents, e.g., —C(=S)R, and imine groups, e. g., —C(=NH)R.
Acyl and heteroacyl groups are bonded to any group or molecule to which they are
attached through the open valence of the carbonyl carbon atom. Typically, they are Cl—C8
acyl groups, which include formyl, acetyl, trifluoroacetyl, pivaloyl, and benzoyl, and C2—C8
heteroacyl groups, which include yacetyl, ethoxycarbonyl, and 4—pyridinoyl. The
hydrocarbyl groups, aryl groups, and heteroforms of such groups that comprise an acyl or
heteroacyl group can be substituted with the substituents described herein as generally
suitable substituents for each of the corresponding component of the acyl or heteroacyl group.
“Aromatic” moiety or “aryl” moiety refers to a monocyclic or fused bicyclic moiety
having the well—known characteristics of aromaticity; examples include phenyl and naphthyl.
Carbocyclic aryl rings and ring systems typically 6—12 carbon ring atoms, and may include a
saturated or partially unsaturated carbocyclic ring fused to an aromatic ring, e.g., a
tetrahydronaphthalene, indane or indene ring . Similarly, oaromatic” and
“heteroaryl” refer to such monocyclic or fused bicyclic ring systems which contain as ring
s one or more heteroatoms selected from O, S and N. The inclusion of a heteroatom
permits aromaticity in 5—membered rings as well as 6—membered rings. Typical
heteroaromatic systems include monocyclic C5—C6 ic groups such as pyridyl,
pyrimidyl, pyrazinyl, pyridazinyl, triazinyl, thienyl, furanyl, pyrrolyl, pyrazolyl, thiazolyl,
isothiazolyl, oxazolyl, isoxazolyl, imidazolyl, triazolyl, thiadiazolyl, oxadiazolyl, and
tetrazolyl rings, and the fused bicyclic es formed by fusing one of these monocyclic
groups with a phenyl ring or with any of the heteroaromatic monocyclic groups to form a C8—
C10 bicyclic group such as indolyl, benzimidazolyl, indazolyl, riazolyl, isoquinolinyl,
inyl, benzothiazolyl, benzofuranyl, benzothienyl, benzisoxazolyl, pyrazolopyridyl,
quinazolinyl, quinoxalinyl, cinnolinyl, and the like. Any monocyclic or fused ring bicyclic
system which has the characteristics of aromaticity in terms of electron distribution
throughout the ring system is ed in this definition. It also includes bicyclic groups
where at least one ring has the characteristics of aromaticity, even though it may be fused to a
nonaromatic ring. Typically, the ring systems contain 5—12 ring member atoms. Preferably
the monocyclic aryl and heteroaryl groups contain 5—6 ring members, and the bicyclic aryl
and heteroaryl groups contain 8—10 ring members.
Similarly, “arylalkyl” and “heteroarylalkyl” refer to ic and heteroaromatic
ring systems which are bonded to their attachment point through a linking group such as an
alkylene, including substituted or unsubstituted, saturated or unsaturated, cyclic or c
linkers. Typically the linker is Cl—C8 alkyl or a heteroform thereof, preferably a Cl—C4
alkyl. These linkers may also include a carbonyl group, thus making them able to provide
substituents as an acyl or heteroacyl moieties.
“Arylalkyl” groups as used herein are hydrocarbyl groups if they are tituted,
and are described by the total number of carbon atoms in the ring and alkylene or similar
linker. Thus a benzyl group is a C7—arylalkyl group, and phenylethyl is a C8—arylalkyl.
Preferably, an arylalkyl group es one or two optionally substituted phenyl rings and a
Cl—C4 alkylene that is unsubstituted or is tuted with one or two Cl—C4 alkyl groups or
Cl—C4 heteroalkyl groups, where the alkyl or heteroalkyl groups can optionally cyclize to
form a ring such as cyclopropane, dioxolane, or oxacyclopentane, and wherein the alkyl or
heteroalkyl groups may be optionally fluorinated. Examples of arylalkyl groups include
optionally substituted benzyl, phenylethyl, diphenylmethyl, and triphenylmethyl groups.
al substituents when present on the aryl ring of an arylalkyl group are the same as
those described herein for an aryl ring. kyl groups lly contain from 7—20 atoms,
preferably 7— 14 atoms.
“Heteroarylalkyl” as described above refers to a moiety comprising an aryl group
that is attached h a linking group, and differs from “arylalkyl” in that at least one ring
atom of the aryl moiety or one atom in the linking group is a heteroatom selected from N, O
and S. The heteroarylalkyl groups are bed herein according to the total number of
atoms in the ring and linker combined, and they include aryl groups linked through a
heteroalkyl linker; heteroaryl groups linked through a hydrocarbyl linker such as an alkylene;
and heteroaryl groups linked through a heteroalkyl linker. For e, heteroaryl groups
include pyridylmethyl, lethyl, —O—benzyl, and the like. Heteroarylalkyl groups typically
contain from 6—20 atoms, preferably 6—14 atoms.
“Alkylene” as used herein refers to a nt hydrocarbyl group; because it is
nt, it can link two other groups together. lly it refers to —(CH2)n— where n is 1—8
and preferably n is 1—4, though where specified, an alkylene can also be substituted by other
groups, and can be of other lengths, and the open valences need not be at opposite ends of a
chain. Thus —CH(Me)— and —C(Me)2— may also be referred to as alkylenes, as can a cyclic
group such as cyclopropan—l,l—diyl. However, for clarity, a three—atom linker that is an
alkylene group, for example, refers to a divalent group in which the available valences for
attachment to other groups are separated by three atoms such as —(CH2)3—, i.e., the specified
length represents the number of atoms linking the attachment points rather than the total
number of atoms in the hydrocarbyl group: —C(Me)2— would thus be a om linker, since
the available valences are separated by only one atom. Where an alkylene group is
substituted, the substituents include those typically present on alkyl groups as bed
herein, thus —C(=O)— is an example of a one—carbon substituted alkylene. Where it is
described as unsaturated, the alkylene may contain one or more double or triple bonds.
“Heteroalkylene” as used herein is defined similarly to the corresponding alkylene
groups, but the ‘hetero’ terms refer to groups that contain one or more atoms selected
from O, S and N and combinations f, within the ne residue; thus at least one
carbon atom of a corresponding alkylene group is replaced by one of the specified
atoms to form a heteroalkylene group. Thus, —C(=O)NH— is an example of a two—
carbon substituted alkylene, where N replaces one carbon, and C is substituted with a
=0 group.
“Heteroform” as used herein refers to a derivative of a group such as an alkyl, aryl,
or acyl, wherein at least one carbon atom of the designated carbocyclic group has been
replaced by a heteroatom selected from N, O and S. Thus the heteroforms of alkyl, alkenyl,
cycloalkyl, alkynyl, acyl, aryl, and arylalkyl are heteroalkyl, heteroalkenyl, heterocyclyl,
heteroalkynyl, heteroacyl, heteroaryl, and heteroarylalkyl, respectively. It will be understood
that the heteroform of an aryl or arylalkyl moiety may contain one less “C” atom than the
ponding all carbon system, because the inclusion of a heteroatom permits aromaticity
in 5—membered rings. For example, the heteroform of C6—C12 aryl is C5—C12 heteroaryl, and
the heteroform of C7—C20 arylalkyl is C6—C20 heteroarylalkyl. It is understood that no more
than two N, O or S atoms are ordinarily connected sequentially, except where an oxo group is
attached to N or S to form a nitro or sulfonyl group, or in the case of certain aromatic
rings, such as triazine, triazole, tetrazole, oxadiazole, thiadiazole, and the like.
Unless otherwise indicated, the term "oxo" refers to =0.
“Halo”, as used herein, includes fluoro, chloro, bromo and iodo. Fluoro, ,
and bromo are often preferred.
“Amino” as used herein refers to NHZ, but where an amino is described as
“substituted” or “optionally substituted”, the term es NR2 wherein each R is
independently H, or is an alkyl, alkenyl, alkynyl, acyl, aryl, or arylalkyl group or a
heteroform of one of these groups, as further defined herein, each of which may be ally
substituted with the substituents described herein as le for the corresponding type of
group. The term also includes forms wherein the two R groups on one nitrogen atom (i.e.,
NR2) are linked together to form a 3—8 ed monocyclic azacyclic ring or an 8—12
membered bicyclic fused azacyclic ring system, each of which may be saturated, unsaturated
or aromatic and which may contain 1—3 heteroatoms ing the azacylic ring nitrogen atom
ndently selected from N, O and S as ring members (i.e., 0—2 heteroatoms selected from
N, O and S in addition to the nitrogen atom of the azacyclic ring), and which may be
optionally substituted with the substituents described as suitable for alkyl groups or, if NR2
comprises an aromatic group, it may be optionally substituted with the substituents described
as typical for aryl or heteroaryl groups. red such azacyclic rings include pyrrolidine,
piperidine, homopiperidine, morpholine, thiomorpholine, piperazine, and homopiperazine.
Amino groups may optionally be in a protected or ected form. One of skill in
the art would appreciate that riate amine protecting groups may vary depending on the
functionality present in the particular le and the nature of the amino group. Suitably
ted amines may include, for example, amines protected as carbamates (e. g., tert—
butoxycarbonyl (Boc), benzyloxycarbonyl (Cbz), fluorenylmethyloxy—carbonyl (Fmoc),
allyloxycarbonyl (Alloc) or (trialkylsilyl)ethoxycarbonyl), carboxamides (e. g., , acyl
or trifluoroacetyl, benzoyl), sulfonamides, phthalimides, succinimides, Schiff’s base
derivatives, and the like. Also included are alkyl or allyl amines, as well as trialkylsilyl
protected amines.
Where an amine is present in protected form, it is sometimes desirable to remove the
ting group. Thus, the methods of the present invention also optionally include a step of
removing any protecting groups on an amine or aminoalkyl group.
The terms “alkylsulfonyl” and ulfonyl” as used herein refer to moieties of the
form —SOZalkyl or —SOZaryl, where alkyl and aryl are defined as above. ally
fluorinated C1_4alkyl, and optionally substituted phenyl groups are preferred for sulfonyl
moieties. The phenyl groups of an arylsulfonyl moiety may be optionally substituted with one
or more substituents suitable for an aryl ring; for example, they may be substituted by halo,
methyl, nitro, alkoxy, amino, or the like. Such sulfonyl moieties, when t on oxygen
form sulfonates. Such sulfonyl moieties form sulfonamides when present on nitrogen, and
sulfones when present on . Representative sulfonates include, e. g., —OSOzMe
(mesylate), —OSOZCF3 (triflate), —OSOZtolyl (tosylate), and the like.
The term “alkoxycarbonyl” as used herein refers to a moiety of the form —COOR’,
where R’ is Cl—C8 alkyl, C2—C8 alkenyl, C5—C6 aryl, or C7—Cl4 arylalkyl, trialkylsilyl, or the
like, each of which may be optionally substituted. When present on nitrogen, such
alkoxycarbonyl moieties form carbamates, which are ntly used as nitrogen protecting
groups. In some such embodiments, R’ may be optionally halogenated Cl—C4 alkyl (e. g.,
tert—butyl, methyl, ethyl, 2,2,2—trichloroethyl, l,l—dimethyl—2,2,2—trichloroethyl), allyl,
optionally tuted benzyl, fluorenylmethyl, or trialkylsilyl (e. g., triisopropylsilyl,
ylsilyl, tert—butyldimethylsilyl). When present on carbon, such moieties may also be
referred to as carboxylate esters, carboalkoxy groups, or the like. In some embodiments
containing a carboxylate ester functional group, R’ is preferably a C1_4 alkyl group. In some
such embodiments, R’ is methyl, ethyl, n—propyl, isopropyl, n—butyl, isobutyl, s—butyl or t—
butyl.
The term "substituted" means that the specified group or moiety bears one or more
drogen substituents. The term "unsubstituted" means that the specified group bears no
such substituents.
“Optionally substituted” as used herein indicates that the particular group or groups
being described may have no non—hydrogen substituents, or the group or groups may have
one or more non—hydrogen tuents (i.e., the group may be substituted or unsubstituted).
If not otherwise specified, the total number of such substituents that may be present is equal
to the number of H atoms present on the tituted form of the group being described.
Where an optional substituent is attached via a double bond, such as a carbonyl oxygen (=0),
the group takes up two available valences, so the total number of substituents that may be
ed is reduced according to the number of available valences.
Alkyl, l and alkynyl groups are often substituted to the extent that such
tution makes sense chemically. Typical substituents include, but are not limited to,
halo, OH, =0, =N—CN, =N—OR, =NR, OR, NR2, SR, SOR, SOZR, SOZNRZ, NRSOZR,
NRCONRZ, NRCOOR, NRCOR, CN, COOR, CONRZ, OOCR, COR, and N02, wherein each
R is independently H, optionally fluorinated Cl—C8 alkyl, C2—C8 heteroalkyl, Cl—C8 acyl,
C2—C8 heteroacyl, C2—C8 alkenyl, C2—C8 heteroalkenyl, C2—C8 alkynyl, C2—C8
alkynyl, C6—Cl2 aryl, C5—Cl2 heteroaryl, C5—C20 arylalkyl, or C5—C20
heteroarylalkyl, and each R is optionally tuted with one or more groups selected from
halo, OH, :0, =N—CN, =N—OR’, =NR’, OR’, NR’z, SR’, SOR’, SOzR’, SOzNR’z, NR’SOzR’,
NR’CONR’z, NR’COOR’, NR’COR’, CN, COOR’, CONR’z, OOCR’, COR’, and N02,
wherein each R’ is independently H, ally fluorinated Cl—C8 alkyl, C2—C8 heteroalkyl,
Cl—C8 acyl, C2—C8 heteroacyl, C6—Cl2 aryl C5—Cl2 heteroaryl, C5—C20 arylalkyl, or C5—
C20 arylalkyl. Alkyl, alkenyl and alkynyl groups can also be substituted by Cl—C8
acyl, C2—C8 heteroacyl, C6—Cl2 aryl or C5—Cl2 heteroaryl, each of which can be substituted
by the substituents that are appropriate for the particular group.
Preferred substituents when present on an alkyl, alkenyl or alkynyl group, or a
heteroform of one of these, include halo, OH, :0, OR, SR, and NR2, where R is defined as
above; sometimes, R is H, optionally fluorinated Cl—C4 alkyl, or optionally fluorinated Cl—
C4 acyl. Particularly preferred substituents when present on R3 include OH, :0, Cl—C4
, OAc, NHAc, NHZ, and NHMe. Sometimes, optional tuents present on an alkyl,
alkenyl or alkynyl group, or a heteroform of one of these, include NRSOZR, NRCONRZ,
COOR, or CONRZ, where R is defined as above; preferably, each R is independently H,
optionally fluorinated Cl—C4 alkyl, or is C6—Cl2 aryl, C5—Cl2 heteroaryl, C7—C20 kyl,
or C6—C20 heteroarylalkyl, each of which may be optionally substituted.
Aryl, heteroaryl and heterocyclyl moieties may be substituted with a variety of
substituents including optionally fluorinated Cl—C8 alkyl, C2—C8 alkenyl, C2—C8 alkynyl,
Cl—C8 acyl, and heteroforms of these, C6—Cl2 aryl, C5—Cl2 for heteroaryl, C6—20 arylalkyl
(CS—20 for heteroarylalkyl), each of which can itself be r substituted; other substituents
for aryl and heteroaryl moieties include halo, OH, OR, CHZOH, CHgOR, , NR2, SR,
SOR, SOzR, SOzNRz, NRSOzR, Z, NRCOOR, NRCOR, CN, COOR, CONRz,
OOCR, C(O)R, and N02, wherein each R is independently H, optionally fluorinated Cl—C8
alkyl, C2—C8 alkyl, C2—C8 alkenyl, C2—C8 heteroalkenyl, C2—C8 alkynyl, C2—C8
heteroalkynyl, C6—Cl2 aryl, C5—Cl2 heteroaryl, C7—C20 arylalkyl, or C6—C20
heteroarylalkyl, and each R is optionally tuted as described above for alkyl groups. The
substituent groups on an aryl or heteroaryl group may of course be further tuted with
the groups described herein as suitable for each type of group that comprises the substituent.
Preferred substituents when present on an aryl, heteroaryl and heterocyclyl moieties include
halo, OH, OR, CHZOH, CHZOR, CHZNRZ, SR, NR2, CN, COOR, CONRZ, and N02, where R
is defined as above, or optionally substituted C6—C12 aryl or C5—C12 aryl ring.
Where an arylalkyl or heteroarylalkyl group is described as optionally substituted,
the substituents may be on either the alkyl or heteroalkyl portion or on the aryl or aryl
portion of the group. The substituents optionally present on the alkyl or heteroalkyl portion
are the same as those described above for alkyl groups generally; the substituents ally
present on the aryl or heteroaryl n are the same as those described above for aryl groups
generally.
The invention encompasses isomers of the subject compounds, particularly
stereoisomers, such as wherein the carbon atom bearing the substituent R1 in formula (I) or
the corresponding atom in disclosed embodiments of formula (I), has the (S)—configuration.
The t invention provides novel indoline analogs of formula (I), which are
useful for the treatment or amelioration of proliferative disorders, in ular, cancer.
The invention encompasses all combinations of preferred embodiments and
preferred substituents described herein.
Preferably, R1 is optionally substituted C2—C4 alkyl, preferably C2—C4 alkyl,
preferably propyl or butyl, preferably pyl or t—butyl.
Preferably, R2, R4 and R6 are independently H or methyl, preferably H. A substituent
at R4 may function as a protecting group, and methods described herein include an optional
deprotection step to remove any protecting groups present on the molecule.
Preferably, R3 is a substituted methyl of the general formula (—CRaRbR°) wherein Ra
is OH, OR, CHgOR, SR, and NR2, where each R is independently H, optionally nated
(preferably fluorinated or chlorinated) Cl—C4 alkyl, or optionally halogenated Cl—C4 acyl,
and preferably OH; and each of Rb and RC is independently H, Cl—C6 alkyl, C2—C6 alkenyl,
C2—C6 alkynyl, C3—C8 cycloalkyl, C3—C8 lkylalkyl, C6—C12 aryl, C7—Cl4 kyl, or
a heteroform of one of these, each of which may be optionally substituted, and preferably H
or Cl—C4 lower alkyl, more preferably H and pyl or t—butyl, tively; or Rb and RC
may be taken together with the carbon to which they are attached to form a C3—C8 cycloalkyl
or a C3—C8 cyclyl ring, which may be optionally substituted. For example, Rb and RC
may be taken together to form an optionally substituted cyclopropyl, cyclobutyl, entyl,
cyclopentenyl, cyclohexyl, cyclohexenyl, tetrahydrofuran, tetrahydropyran,
tetrahydrothiofuran, tetrahydrothiopyran, pyrrolidine, or piperidine ring, and the like. In a
preferred embodiment, each of Rb and RC are taken er to form a cyclohexyl or a
2012/033715
entyl ring. In some embodiments, the ring formed by Rb and RC may be fused to a
substituted or unsubstituted phenyl ring to provide, for example, and indenyl or
tetrahydronaphthyl ring .
In other red embodiments, R3 is C1—C4 alkyl, C3—C6 cycloalkyl, C4—C8
cycloalkylalkyl, or C6—C8 arylalkyl, each of which may be optionally substituted. In
preferred embodiments, the alkyl group comprising part of R3 is substituted with at least one
substituent selected from the group consisting of OH, OR, CHgOR, SR, and NR2, where each
R is independently H, optionally fluorinated Cl—C4 alkyl, or optionally fluorinated Cl—C4
acyl. Preferably R3 is substituted with at least one substituent selected from the group
consisting of OH, OMe, OAc, NHZ, NHMe, CHZOH and NHAc. In more specific
embodiments, R3 is a Cl—C8, preferably Cl—C4, more preferably C2—C3, most preferably C2
straight chain, branched, or cycloalkyl group, each of which is substituted on the carbon atom
adjacent to the carbonyl group that is part of R5 with OH, OMe, OAc, NH2, NHMe, CHZOH
or NHAc, preferably OH.
Preferably R5 is an optionally substituted phenyl, yl, benzimidazole,
azole, benzthiazole, pyridinyl, pyrimidinyl, pyrazinyl or pyridazinyl ring, and more
preferably, R5 is an optionally tuted oxazole, oxazoline, thiazole, thiazoline, pyrazole,
pyrazoline, imidazole, imidazoline, pyrrole, pyrroline, isoxazole, isoxazoline, isothiazole,
isothiazoline, zole, thiadiazole, triazole or tetrazole ring.
Preferred substituents include halo, nitro, cyano, or optionally fluorinated Cl—C4
alkyl, optionally fluorinated Cl—C4 alkoxy, COORS, CONR92, C6—C12 aryl or C5—C12
aryl, each of which may be optionally substituted; where R8 is H, or Cl—C8 alkyl, C2—
C8 alkenyl, C6—C12 aryl, or C7—Cl4 arylalkyl, or a heteroform of one of these, each of which
may be optionally substituted; and each R9 is independently H, or Cl—C12 alkyl, Cl—C12
heteroalkyl, C2—C12 alkenyl, C2—C12 heteroalkenyl, C3—C8 lkyl, C3—C8 heterocyclyl,
C4—C12 cycloalkylalkyl, C4—C12 heterocyclylalkyl, C6—C12 aryl, C5—C12 heteroaryl, C7—Cl4
arylalkyl, or C6—Cl4 heteroarylalkyl, each of which may be optionally substituted; or two R9
on the same N can cyclize to form an optionally substituted 3— to 8—membered azacyclic ring,
ally containing an additional heteroatom selected from N, O, and S as a ring member;
preferred such azacyclic rings include pyrrolidine, piperidine, homopiperidine, morpholine,
thiomorpholine, zine, and homopiperazine.
In certain preferred embodiments, R5 is an optionally substituted oxazole or le
ring. In some such embodiments, R5 is an oxazole ring substituted with an optionally
tuted C6—C12 aryl or C5—C12 heteroaryl ring. In some embodiments, R5 is an oxazole
ring substituted with one or more alkyl, halo, carboxylic acid, ester or amide substituents.
In specific embodiments of formula (I), R5 is an optionally substituted heterocyclic
or heteroaromatic ring of the formula:
(R14)p
§_[/Jl\l N N
§—</N\II—(R14)p . §_</ immk H j_(R14)qI
Q ; Q Q Q
g—éfil §—</Q\):—I(R14)p gfi §_(§N
/\\\/Q X/Cl)
; (R14)
- P (R14) P
; or
wherein Q is O, S or NR”, where R13 is H or Cl—C4 alkyl; each R14 is independently
halo, nitro, cyano, or optionally fluorinated Cl—C4 alkyl, optionally fluorinated Cl—C4
, COORs, CONR92, C6—C12 aryl or C5—C12 heteroaryl, each of which may be
ally substituted; where R8 is H, or Cl—C8 alkyl, C2—C8 alkenyl, C6—C12 aryl, or C7—
C14 arylalkyl, or a heteroform of one of these, each of which may be optionally substituted;
and each R9 is independently H, or Cl—C12 alkyl, Cl—C12 heteroalkyl, C2—C12 alkenyl, C2—
C12 heteroalkenyl, C3—C8 cycloalkyl, C3—C8 heterocyclyl, C4—C12 cycloalkylalkyl, C4—C12
heterocyclylalkyl, C6—C12 aryl, C5—C12 heteroaryl, C7—Cl4 arylalkyl, or C6—Cl4
heteroarylalkyl, each of which may be optionally substituted; or two R9 on the same N can
cyclize to form an ally substituted 3— to 8—membered azacyclic ring, optionally
containing an additional heteroatom selected from N, O, and S as a ring member; p is 0—3;
and q is 0 to 4. Such azacyclic rings may be ted, unsaturated or aromatic; preferred
such azacyclic rings include pyrrolidine, piperidine, homopiperidine, morpholine,
thiomorpholine, zine, and perazine.
In certain preferred embodiments of formula (I), R5 is
MEIR“R12 or é—{IR11R12
wherein each R11 and R12 is independently H, halo, nitro, cyano, or optionally
fluorinated Cl—C4 alkyl, optionally fluorinated Cl—C4 alkoxy, COORs, CONR92, C6—C12
aryl or C5—C12 heteroaryl, each of which may be optionally substituted; where R8 is H, or
Cl—C8 alkyl, C2—C8 alkenyl, C6—C12 aryl, or C7—Cl4 arylalkyl, or a heteroform of one of
these, each of which may be optionally substituted; and
each R9 is ndently H, or Cl—Cl2 alkyl, Cl—Cl2 heteroalkyl, C2—Cl2 alkenyl,
C2—Cl2 heteroalkenyl, C3—C8 cycloalkyl, C3—C8 cyclyl, C4—Cl2 cycloalkylalkyl, C4—
C12 heterocyclylalkyl, C6—Cl2 aryl, C5—Cl2 heteroaryl, C7—Cl4 arylalkyl, or C6—Cl4
heteroarylalkyl, each of which may be ally substituted; or two R9 on the same N can
cyclize to form an optionally substituted 3— to 8—membered azacyclic ring, optionally
containing an additional heteroatom selected from N, O, and S as a ring member. Such
azacyclic rings may be saturated, unsaturated or aromatic; preferred such azacyclic rings
include idine, piperidine, homopiperidine, morpholine, thiomorpholine, piperazine, and
homopiperazine.
In some such embodiments, each R11 and R12 is independently H, halo, nitro, cyano,
Cl—C4 alkyl, Cl—C4 alkoxy, COORS, or , C6—Cl2 aryl or C5—Cl2 heteroaryl, each of
which may be optionally substituted, and in particular embodiments R11 is halo, nitro, cyano,
Cl—C4 alkyl, Cl—C4 alkoxy, COORS, or CONRgz, C6—Cl2 aryl or C5—Cl2 heteroaryl, each of
which may be optionally substituted, and R12 is H.
Substituents on the indole and tyrosine components of the macrocylic ring of
formula (I), Y and Y’ respectively, are located by the corresponding ring positions as shown
in formula II:
(11),
wherein R6 is as defined in formula (I); hence, Y may be at one or more of positions 4, 5, 6
and 7 of the indole moiety, and Y’ may be at one or more of positions 2, 3 and 5 of the
tyrosine moiety.
Preferably each Y and Y’ is ndently halo (F, Cl, Br, or I), OH, Cl—C4 alkoxy,
preferably halo, particulary C1 or F; preferably m is 3, 2, l or preferably, 0; and preferably m’
is 2, l or preferably 0.
In preferred embodiments,Y is at one or more of positions 5, 6 and 7, one or more of
ons 5 and 7, one of positions 5, 6 and 7, one of ons 5 and 7, position 5 only, or
position 7 only. In preferred ments,Y’ is at one or more of positions 2 and 3, one of
positions 2 and 3, position 2 only, or position 3 only. In particular embodiments one or both
rings are substituted.
The invention encompasses all combinations of preferred embodiments and
preferred substituents as if each had been laboriously set forth, i.e. preferred substituents at
Rl combined with each preferred substituent at one or more of R2—R6 and Y/Y’/m/m’, etc.
Particular es of such combinations include:
la. Oxazole, 4 oxazoyl derViatives with esters other than methyl ester in position 4:
R1 is Cl—C4 alkyl, particulary isopropyl or t—butyl,
R2, R4 and R6 are H,
R3 is a substituted methyl of the formula bRC) wherein Ra is OH, Rb is H, and RC is
isopropyl or t—butyl,
R5 is
§_<,:‘)fo R
wherein R is H, Cl—C4 alkyl or Cl—C4 alkyloxy, particulary , H, or methoxy, and
Y is F and/or Cl, preferably F, at postion 5 and/or 7, preferably 5,
m is 0, l or 2, preferably 0 or 1, and
m’ is 0.
lb. Oxazole, 4 oxazoyl derViatives with phosphate esters in on 4:
R1 is Cl—C4 alkyl, particulary isopropyl or t—butyl,
R2, R4 and R6 are H,
R3 is a substituted methyl of the formula (—CRaRbRC) n Ra is OH, Rb is H, and RC is
isopropyl or t—butyl,
R5 is
§_</Of0 é ONaN /P\
wherein R is H, Cl—C4 alkyl, particulary methyl or H, and
Y is F and/or Cl, preferably F, at postion 5 and/or 7, preferably 5,
m is 0, l or 2, preferably 0 or 1, and
m’ is 0.
II. Oxazole, 4 l derViatives with alcohol or ketone in position 4:
R1 is Cl—C4 alkyl, particulary isopropyl or t—butyl,
R2, R4 and R6 are H,
R3 is a substituted methyl of the formula (—CRaRbRC) wherein Ra is OH, Rb is H, and RC is
isopropyl or t—butyl,
R5 is
HSTR
wherein R is hydroxyl or C1—C4 alcohol, or Cl—C4 , particularly hydroxyl, hydroxy
methyl, l—hydroxy ethyl or l—hydroxy isopropyl, and
Y is F and/or Cl, preferably F, at postion 5 and/or 7, preferably 5,
m is 0, l or 2, preferably 0 or 1, and
m’ is 0.
III. Oxazole, 4 oxazoyl derViatives with amide, amine, carbamate,or sulfonamide in
position 4:
R1 is Cl—C4 alkyl, particulary isopropyl or t—butyl,
R2, R4 and R6 are H,
R3 is a substituted methyl of the a (—CRaRbRC) wherein Ra is OH, Rb is H, and RC is
isopropyl or t—butyl,
R5 is
H2}Ra Rb
wherein Ra is optionally substituted C0—C4 alkyl, Rb and Rc are independently H, Cl—C8
alkyl, C2—C8 alkenyl, C6—Cl2 aryl, or a heteroform of one of these, each of which may be
optionally substituted, particularly wherein Ra is C0 or Cl alkyl, Rb is H, and Rc is H,
methyl, methyl ester, methyl sulfonyl or phenyl sulfonyl, and
Y is F and/or Cl, preferably F, at 5 and/or 7, ably 5,
m is 0, l or 2, ably 0 or 1, and
m’ is 0.
IV. Oxazole, 4 l derViatives with cyano in position 4:
R1 is Cl—C4 alkyl, particulary isopropyl or t—butyl,
R2, R4 and R6 are H,
R3 is a substituted methyl of the formula (—CRaRbRC) wherein Ra is OH, Rb is H, and RC is
pyl or t—butyl,
R5 is
é—{ICN
wherein R is H, C1—C8 alkyl, C2—C8 alkenyl, C6—Cl2 aryl, or a heteroform of one of these,
each of which may be optionally tuted, particularly wherein R is H, methyl, or NHAc,
Y is F and/or Cl, preferably F, at postion 5 and/or 7, preferably 5,
m is 0, l or 2, preferably 0 or 1, and
m’ is 0.
V. e, 4 oxazoyl derViatives with a heterocycle in position 4:
R1 is Cl—C4 alkyl, particulary isopropyl or l,
R2, R4 and R6 are H,
R3 is a substituted methyl of the a (—CRaRbRC) wherein Ra is OH, Rb is H, and RC is
isopropyl or t—butyl,
R5 is
HZ}R
wherein R is a C3—C8 heterocyclyl, C4—Cl2 heterocyclylalkyl, C5—Cl2 heteroaryl, or C6—Cl4
heteroarylalkyl, each of which may be optionally substituted, particularly an optionally
substituted oxazole, oxazoline, thiazole, thiazoline, pyrazole, pyrazoline, imidazole,
imidazoline, pyrrole, pyrroline, ole, isoxazoline, isothiazole, isothiazoline, oxadiazole,
thiadiazole, triazole or tetrazole ring, wherein preferred substituents are halo, nitro, cyano, or
ally fluorinated Cl—C4 alkyl, optionally fluorinated Cl—C4 alkoxy, COORs, CONR92,
C6—Cl2 aryl or C5—Cl2 heteroaryl, each of which may be optionally substituted; where R8 is
H, or Cl—C8 alkyl, C2—C8 alkenyl, C6—Cl2 aryl, or C7—Cl4 arylalkyl, or a heteroform of one
of these, each of which may be optionally substituted; and each R9 is independently H, or Cl—
C12 alkyl, Cl—Cl2 heteroalkyl, C2—Cl2 alkenyl, C2—Cl2 heteroalkenyl, C3—C8 cycloalkyl,
C3—C8 heterocyclyl, C4—Cl2 cycloalkylalkyl, C4—Cl2 heterocyclylalkyl, C6—Cl2 aryl, C5—
C12 heteroaryl, C7—Cl4 arylalkyl, or C6—Cl4 heteroarylalkyl, each of which may be
optionally substituted; optionally containing an additional heteroatom selected from N, O,
and S as a ring , and
Y is F and/or Cl, preferably F, at postion 5 and/or 7, preferably 5,
m is 0, l or 2, preferably 0 or 1, and
m’ is 0.
Where chiral carbons are included in chemical structures, unless a ular
orientation is depicted, both stereoisomeric forms are intended to be encompassed.
Compounds of formula (I) and disclosed embodiments f may, for example, have two or
more asymmetric centers and therefore exist in different enantiomeric and/or diastereomeric
forms. All optical isomers and stereoisomers of the compounds described herein, and
mixtures f, are considered to be within the scope of the invention, ing the
racemate, one or more enantiomeric forms, one or more diastereomeric forms, or mixtures
thereof. In particular, c mixtures of single diastereomers such as the ones described,
diastereomers having an diastereomeric excess (d.e.) of greater than 90% or greater than
about 95%, and enantiomers having an enantiomeric excess (e.e.) of r than 90% or
r than about 95%. Similarly, where double bonds are present, the compounds can exist
in some cases as either cis or trans isomers; the invention includes each isomer individually
as well as mixtures of isomers. Where the compounds described may also exist in tautomeric
forms, this invention relates to the use of all such tautomers and es thereof.
Compounds of formula (I) and sed embodiments thereof can be supplied in
free base form, or can be supplied as a pharmaceutically acceptable salt, or as a mixture of
the free base form and the corresponding salt. The compounds of the invention may be
isolated as salts where an ionizable group such as a basic amine or a carboxylic acid is
present. The invention includes the salts of these compounds that have pharmaceutically
acceptable counterions. Such salts are well known in the art, and include, for example, salts
of acidic groups formed by on with organic or inorganic bases, and salts of basic groups
formed by reaction with c or inorganic acids, as long as the counterions introduced by
the reaction are acceptable for pharmaceutical uses. Examples of nic bases with alkali
metal hydroxides (e.g., sodium hydroxide, potassium hydroxide, etc.), alkaline earth metal
hydroxides (e.g., of calcium, magnesium, etc.), and hydroxides of aluminum, ammonium, etc.
Examples of organic bases that could be used include trimethylamine, triethylamine,
pyridine, picoline, ethanolamine, diethanolamine, triethanolamine, dicyclohexylamine,
N,N’ —dibenzylethylenediamine, etc.
Suitable salts include those of inorganic acids such as hlorides,
hydrobromides, sulfates, hydrosulfates, and the like, or organic acid addition salts. Examples
of inorganic acids that could be used include hloric acid, hydrobromic acid, nitric acid,
sulfuric acid, phosphoric acid, etc. Examples of organic acids e formic acid, oxalic
acid, acetic acid, tartaric acid, esulfonic acid, benzenesulfonic acid, malic acid,
methanesulfonic acid, benzenesulfonic acid, p—toluenesulfonic acid, etc. Also included are
salts with basic amino acids such as arginine, lysine, omithine, etc., and salts with acidic
amino acids such as aspartic acid, glutamic acid, etc.
In addition, compounds of a (I) and disclosed ments thereof may be
coupled or conjugated to moieties such as a targeting agent. Among such ing agents are
antibodies or immunologically active fragments thereof, including single—chain antibody
forms directed against tumor antigens or against receptors or integrins associated with
tumors, peptidomimetics directed against these es, and the like. In addition,
compounds of formula (I) and disclosed embodiments thereof may be coupled or conjugated
to an excipient, such as a polymer ent, such as polyethylene glycol for altering
pharrnacokinetics, such as described in the Advanced Drug Delivery Reviews theme issue
(Vol 61, November 2009) entitled, Polymer Therapeutics: Clinical Applications and
Challenges for Development, including Pasut and Veronese, Adv Drug Delivery Rev 61
(l3):ll77—1188, 2009. The selected PEG may be of any convenient molecular weight, and
may be linear or branched, and may be optionally conjugated through a linker. The average
molecular weight of PEG will preferably range from about 2 kiloDalton (kDa) to about 100
kDa, more preferably from about 5 kDa to about 40 kDa.
nds of formula (I) and disclosed embodiment thereofs are useful in treating
or ameliorating cell proliferative diseases. In particular, the compounds and s
described herein are useful for the treatment or amelioration of tumors and malignancies
associated with breast, ovary, lung (SCLC and NSCLC), colon, rectum, te, testes, skin
(e. g., melanoma, basal cell carcinoma, and squamous cell carcinoma), pancreas, liver, kidney,
brain (e. g., glioma, meningioma, schwannomas, and medulloblastomas), and the blood and
hematopoietic , including, e. g., leukemia, dgkins lymphoma, and le
myeloma.
In the methods described herein, for e, cell proliferation may be reduced,
and/or cell death, such as sis or apoptotic cell death, may be induced. The cell
erative disorder may be a tumor or non—tumor cancer in a human or animal subject.
The nds and methods provided herein for reducing cell proliferation and/or
inducing cell death may be used alone, or in conjunction with or in combination with
surgical, radiation, chemotherapeutic, immunotherapy, and bone marrow and/or stem cell
lantation methods, or with other palliative agents, such as compounds that aid in
nutrition or general health, anti—emetic agents, and the like.
In some embodiments, the compounds of the present invention are administered in
combination with a chemotherapeutic agent, and used to reduce cell proliferation, induce cell
death, and/or treat or ameliorate a cell proliferative disorder.
The compounds described herein are also useful against certain drug resistant
tumors and cancer cell lines, in particular against cancers that are resistant to TAXOL®
and/or vinca alkaloid anti—cancer .
Where an additional chemotherapeutic drug is administered, it is typically one
known to have cytostatic, cytotoxic or antineoplastic activity. These agents include, without
tion, tabolites (e. g., cytarabine, fludaragine, 5—fluoro—2’—deoxyuridine,
gemcitabine, hydroxyurea, methotrexate); DNA active agents (e. g., bleomycin, chlorambucil,
cisplatin, cyclophosphamide); alating agents (e. g., adriamycin and mitoxantrone);
protein synthesis inhibitors (e. g., L—asparaginase, cycloheXimide, puromycin); topoisomerase
type I inhibitors (e. g., camptothecin, topotecan or ecan); topoisomerase type II
inhibitors (e.g. etoposide, teniposide anthraquinones, cyclines and podophyllotoxin);
microtubule inhibitors (e.g., taxanes, such as paclitaxel and docetaxel, colcemid, colchicines,
or vinca alkaloids, such as stine and vincristine); kinase inhibitors (e.g. flavopiridol,
staurosporin and hydroxystaurosporine), drugs that affect Hsp90 (e.g. geldanomycin and
geldanomycin derivatives, radicicol, purine derivatives and antibodies or antibody fragments
that ively bind to Hsp90), TRAIL, a TRAIL or antibody, TNF—(x or TNF—B, and/or
radiation therapy.
In some preferred embodiments, the onal cancer therapeutic agent is TRAIL, a
TRAIL receptor antibody, TNF—(x or TNF—B. In other preferred embodiments, the additional
drugs for co—administration with the compounds of the invention affects Hsp90 (heat—shock
protein 90).
Suitable Hsp90 inhibitors include ansamycin derivatives such as geldanomycin and
geldanomycin derivatives including l7—(allylamino)—l7—desmethoxygeldanamycin (l7—
AAG), its dihydro derivative, H2, and l7—amino derivatives of geldanamycin such as
l7—dimethylaminoethylamino— ethoxy—geldanamycin (l7—DMAG), ll—
danamycin, and 5,6—dihydrogeldanamycin, which are disclosed in US. Pat. Nos.
4,261,989; 5,387,584; and 5,932,566, each of which is incorporated herein by reference.
Other suitable Hsp90 inhibitors include radicicol and oximes and other analogs thereof,
sed in Soga, et al., Curr. Cancer Drug Targets, 3, 359—69 (2003), and in Yamamoto, et
al., Angew. Chem., 42, 1280—84 ; and in Moulin, et al., J. Amer. Chem. Soc., vol 127,
6999—7004 (2005); purine derivatives such as PU3, PU24FCI and PUH64 (see Chiosis et al.,
ACS Chem. Biol. Vol. 1(5), 279—284 (2006) and those disclosed in PCT Application No. WO
2002/0236075; related heterocyclic derivatives disclosed in PCT Application No. WO
2005/028434; and arylpyrazole compounds disclosed in Cheung, et al., Bioorg. Med.
Chem. Lett., vol. 15, 3338—43 (2005). Antibodies or dy fragments that selectively bind
to Hsp90 may also be administered as drugs to cause inhibition of Hsp90, and can be used in
combination with the compounds of the invention.
Where a compound described herein is utilized in conjunction with or in
combination with another therapeutic, the two agents may be co—administered, or they may be
administered separately where their administration is timed so the two agents act concurrently
or sequentially.
Accordingly, the itions used in the methods described herein include at least
one compound of the invention, and can optionally include one or more additional cytotoxic
or cytostatic eutic such as, but not d to, those disclosed above. Similarly, the
methods of the invention include methods n a subject sed as in need of
treatment for cancer is treated with at least one compound or composition of the invention,
and is simultaneously or concurrently d with one or more of the additional eutic
agents described above.
Formulation and stration
The formulations useful in the invention include standard formulations such as those
set forth in Remington’s Pharmaceutical Sciences, latest edition, Mack Publishing Co.,
Easton, PA, incorporated herein by reference. Such ations include those designed for
oral delivery, slow release, topical administration, parenteral administration, or any other
suitable route as determined by an attending physician or narian. Thus administration
may be systemic or local. Suitable vehicles or excipients include liposomes, micelles,
nanoparticles, ric matrices, buffers, and the full range of formulations known to
practitioners.
ic formulations include those designed for ion (e. g., intramuscular,
intravenous or subcutaneous injection) and those prepared for transdermal, transmucosal, or
oral administration. The formulation will generally include a diluent as well as, in some
cases, adjuvants, buffers, preservatives and the like. The compounds can be administered
also in liposomal compositions or as microemulsions.
Injection methods are sometimes appropriate routes for administration of the
compounds for systemic treatments and sometimes also for localized treatments. These
include methods for intravenous, intramuscular, subcutaneous, and other methods for internal
delivery that bypass the mucosal and dermal barriers to deliver the composition directly into
the subject’s living tissues.
For injection, formulations can be prepared in conventional forms as liquid solutions
or sions or as solid forms suitable for solution or suspension in liquid prior to injection
or as emulsions. Suitable excipients include, for example, water, saline, dextrose, glycerol
and the like. Such compositions may also contain s of nontoxic auxiliary substances
such as wetting or emulsifying , pH buffering agents and the like, such as, for example,
sodium e, sorbitan monolaurate, and so forth.
Various sustained release s for drugs have also been devised and can be
utilized with the compounds of the invention. See, for example, US. Patent No. 5,624,677.
The present compositions can be utilized in such controlled—release delivery systems where
appropriate.
ic administration may also include vely noninvasive s such as
the use of suppositories, transdermal patches, transmucosal delivery and intranasal
stration. Oral administration is also suitable for compounds of the invention. Suitable
forms include syrups, capsules, tablets, and the like as in understood in the art.
Selection of a particular route of administration for a given subject and indication is
well within the ordinary level of skill in the art. For example, rectal delivery as a suppository
is often appropriate where the subject experiences nausea and vomiting that precludes
ive oral delivery. Transdermal patches are commonly capable of delivering a
controlled—release dosage over several days or to a specific locus, and are thus suitable for
subjects where these effects are desired.
Transmucosal delivery is also appropriate for some of the compositions and methods
of the invention. Thus the compositions of the ion may be administered transmucosally
using logy and formulation methods that are known in the art.
Regardless of the route of administration selected, the compounds described herein,
which may be used in a suitable hydrated form, and/or the pharmaceutical compositions of
the present invention, are formulated into pharmaceutically—acceptable dosage forms by
conventional methods known to those of skill in the art.
Actual dosage levels of the active ients in the pharmaceutical compositions of
the present invention may be varied so as to obtain an amount of the active ingredient which
is effective to achieve the desired therapeutic response for a particular patient, composition,
and mode of administration, without being toxic to the patient.
The ed dosage level will depend upon a variety of s including the activity
of the particular nd of the present invention employed, or the ester, salt or amide
thereof, the route of administration, the time of administration, the rate of excretion or
metabolism of the ular compound being employed, the rate and extent of absorption, the
duration of the treatment, other drugs, compounds and/or materials used in combination with
the particular compound ed, the age, sex, weight, ion, general health and prior
medical history of the patient being treated, and like factors well known in the medical arts.
For administration to animal or human subjects, the dosage of a compound of the
ion is typically 10—2400 mg per administration. However, dosage levels are highly
dependent on the nature of the condition, the condition of the patient, the judgment of the
practitioner, and the frequency and mode of administration. Selection of a dosage of such
compounds is within the skill of an ordinary artisan, and may be accomplished by starting at
a relatively low dosage and increasing the dosage until an acceptable effect is ed.
Frequency of stration of the compounds of the invention can also be readily
determined by one skilled in the art using well known techniques. For example, the patient
may be administered a low dosage of a compound or composition of the invention at a low
frequency such as once per day or less often; and the dosage and/or frequency of
administration may be systematically increased until a desired effect is achieved in the
patient.
Synthetic Processes
The subject compounds have been prepared through an ent multi—step process,
as shown in Scheme 1. A key step in the s es the electrochemical oxidative
cyclization of a phenolic intermediate to provide an indoline compound of formula (I), which
may be r functionalized as exemplified by the compounds described herein. The
oxidative cyclization was described in US. Application Serial No. 12/134,984, filed 6 June
2008, and hed as US 2009/0005572.
As shown in Scheme 1, dipeptide starting materials were prepared under standard
ions known in the art, for example, by coupling an N—hydroxysuccinimide ester or
another activated ester of a protected amino acid with serine. It will be understood by one of
skill in the art that a wide variety of le conditions may be utilized to form the dipeptide
starting materials, including the extensive body of literature describing sis of es
and peptide mimetics.
The dipeptide was reacted with an optionally substituted indole and an activating
reagent, optionally in the presence of a protic acid, to provide an indole—containing dipeptide.
Suitable activating reagents include, for example, carboxylic acid anhydrides, mixed
anhydrides, or acyl halides (e. g., acetic anhydride, trifluoroacetic anhydride, acetyl chloride,
oxalyl de), sulfonic acid anhydrides or halides (e. g., methanesulfonic anhydride,
trifluoromethanesulfonic anhydride, methanesulfonyl de), mineral acid halides (e. g.,
thionyl chloride, or phosphoryl chloride), and the like.
In a preferred embodiment, the activating agent was acetic anhydride, and the
reaction was conducted in acetic acid as a protic solvent. In a particularly preferred
embodiment, the dipeptide and an optionally substituted indole were reacted with acetic
anhydride in acetic acid at about 80 0C, to provide the desired compound.
The preparation of N—acetyl phan derivatives by reaction of serine or yl
serine and an optionally substituted indole in acetic anhydride and acetic acid has been
previously reported. Y. ma, et al., Tetrahedron Letters (1999), 40: 7803; Y.
Yokoyama, et al., Eur. J. Org. Chem. (2004), 1244; Y. Konda—Yamada, et al., Tetrahedron
(2002), 58: 7851; M. W. Orme, et al., US 721. However, the preparation of other
acylated tryptophan derivatives under these conditions, such as the dipeptide analogs of the
present invention, has not been previously described to our knowledge.
Esterification of the free carboxylic acid, followed by oxidative cyclization of the
dipeptide intermediate with an oxidizing agent, for example, DDQ, provided an oxazole
intermediate. It will be tood by those in the art that other oxidative conditions could be
utilized, such as, for example, the use of 8—tetracyanoquinodimethane (TCNQ), ceric
ammonium nitrate, alent iodide reagents, and the like.
Deprotection of the protected amino group, if present, and amide bond formation
provided a phenolic intermediate. Electrochemical oxidative cyclization of the phenolic
intermediate provided a macrocyclic indoline compound. Such compounds were further
elucidated to compounds of formula (I) through a series of straightforward chemical
transformation. For example, removal of the Cbz group and acylation or amide bond
ion was used to provide compounds of formula (I), wherein R5 is an acyl substituent,
for example —C(O)R3. One of skill in the art will understand that the order of these steps
could be reversed, depending on the nature of the onal groups to be installed, and the
protecting groups utilized.
Scheme 1 provides a l synthetic route useful for the ation of
macrocyclic indoline compounds of formula (1). Those skilled in the art will appreciate that
certain reaction conditions can be varied without altering the essence of the present invention.
For example, coupling ons can be accomplished with a y of activated esters, such
as by way of example only N—hydroxybenzotriazole ester, rophenyl ester, N—
hydroxyphthalimide esters, activated esters generated by the reaction of the carboxylic acid
with a carbodiimide, and other activated esters conventionally used for acylation of an amine
2012/033715
to form amide bonds. In addition, while amino groups are iently protected as
carbobenzyloxy (Cbz) group, one of skill in the art will recognize that other suitable
protecting groups could be ed. Suitable protecting groups and methods to attach and
remove them are well known in the art, and are described, for example, in T.H. Greene,
Protective Groups in Organic Synthesis, 2nd ed.
Scheme 1.
|' R 1 gggfigng R 1 R1 H CZO H
Cbk AYO-SU _,
COOH COOH
N obz\N)\WN CbZ\N)\ll/N H
H \E H
O HZNTCOOH O
OH / NHRB / N—R
1. esterify 1. OH
2. DDQ 2. couple Cbz-aa
oxidative
electrochemical
cyclization
The process described in Scheme 1 is useful for the preparation of indolines of
formula (I) in high yield and purity. In particular, the compounds of the present invention are
available in good yield and with high diastereomeric purity, preferably in greater than 95%
diastereomeric excess, sometimes 98% diastereomeric excess.
The following examples are d to illustrate but not to limit the invention.
Examples
Synthesis of Compound 57
Step 1
H2N H
COOMe Cbz\N N COOMe
Cbz‘N OH
+ /
/ peptidecoupling NH
O N
To a dry 100—ml flask with magnetic stir bar was added Cbz—L—(x—t—butylglycine
DCHA salt (5.0 g, 11.2 mmol), tophane methyl ester hydrochloride (3.14 g, 12.3
mmol, l.l eq.), HOBt (1.76 g, 13.4 mmol, 1.2 eq.), anhydrous DMF (30 ml) and
N,N—diisopropylethylamine (2.93 ml, 16.8 mmol, 15 eq.). The reaction mixture was cooled
to 0 °C followed by addition of EDC‘HCl (2.58 g, 13.4 mmol, 1.2 eq.). The resulting reaction
mixture was stirred at RT for 16 h. The reaction was monitored by LCMS. The reaction
mixture was diluted with EtOAc (300 ml)/water (100 ml). The organic phase was ted
and the aqueous phase was extracted by EtOAc (2x50 ml). The ed organic layers
were washed by water (100 ml), 10% aqueous NaHSO4 (100 ml), water (100 ml), saturated
NaHCO3 (100 ml), and brine (2 x 100 ml), and then dried over NaZSO4. After concentration,
the crude was used directly in the next step.
Step 2
Cbz\ N COOMe Cbz‘N /N COOMe
H DDQ H /
o THF 0
NH reflux
A solution of DDQ (6.2 g, 27.3 mmol, 2.4 eq.) in THF (100 ml) was added to the
refluxing solution of the compound synthesized in Step 1 above (1 1.2 mmol) in THF (200
ml) and the dark solution was heated in reflux in an oil bath at 85 °C for l h. After cooling,
the solvent was removed on a rotary evaporator. The residue was ved in ethyl acetate
(500 ml), which was washed by water (200 ml), aqueous ted NaHCO3 (2x200 ml),
water (2x200 ml), brine (100 ml) and dried over NaZSO4. After concentration, the mixture
was purified by flash column chromatography (20% EtOAc in CH2C12). This d 3.24 g
(64% yield) of product.
Step 3
N /N COOMe
H H2N COOMe
H / /
O _2, O
Pd/C
\ \
NH NH
To a 100—ml flask containing material synthesized in Step 2 above (3.24 g, 7.02
mmol) was added methanol (30 ml) and Pd/C (10%) (650 mg, 0.61 mmol, 0.09 eq.) under N2.
H2 balloon was added and the flask was purged with Hz for 4 times. Then H2 balloon was
opened to the reaction . After 3 h stirring almost no starting material remained. The
reaction was stopped. The reaction mixture was filtered through a pad of Celite and the black
cake was washed with methanol (3 x 10 ml). The filtrate was concentrated and the residue
was used in next step directly without further cation.
] Step 4
To a dry 100—ml flask with magnetic stir bar was added the amine synthesized in
step 3 (2.06 g, 6.29 mmol), Cbz—L—tyrosine (1.98 g, 6.91 mmol, l.l eq.), HOBt (0.94 g, 6.91
mmol, l.l eq.), anhydrous DMF (30 ml) and N,N—diisopropylethylamine (1.31 ml, 7.54
mmol, 12 eq.). The reaction mixture was cooled to 0 °C followed by addition of EDC‘HCl
(1.33 g, 6.91 mmol, l.l eq.). The resulting on mixture was stirred at RT for 16 h. The
reaction was red by LCMS. The reaction mixture was diluted with EtOAc (300
ml)/water (100 ml). The organic phase was separated and the aqueous phase was extracted
by EtOAc (2x50 ml). The combined organic layers were washed by water (100 ml), 10%
aqueous NaHSO4 (100 ml), water (100 ml), saturated NaHCO3 (100 ml), and brine (2 x 100
ml), and then dried over NagSO4. After concentration, the crude was used directly in the next
step.
Step 5
HN ”N
HN COOMe
H // COOMe
CszN,,, 0 /
CbZ/N/I. O
O K2CO3, Et4N+BF4_
/ 1.6V
OH H “Q
..,,,N
O H
An electrochemical cell was assembled using a glass cylinder (6 cm diameter x 11
cm ) and a custom rack (polypropylene and nylon) which ted 9 vertical graphite
rods (6.15 mm diameter x 12 cm length). The rods were arranged in a pattern of a ring with 6
anodes and 3 cathodes. Electrodes were immersed to a depth of 6.5 cm. The phenolic
material synthesized in Step 4 above (5.00 g, 8.0 mmol), 4 (4.00 g, 18.4 mmol, 2.9
eq.) and (NH4)2CO3(1.0 g, 10.4 mmol, 1.3 eq.) and ID water (4 ml) were added in DMF (200
ml). The solution was stirred vigorously in a stir plate (approx. 600 rpm). The
electrochemical reaction was carried out at a potential of 1.5—1.6 volts. After 3 days, most of
the original SM was consumed as ined by HPLC integration at 220 nM. The reaction
mixture was concentrated on a rotary evaporator (bath temp. g 35 OC) and dried further on a
vacuum manifold. The residue was ioned between EtOAc (200 ml) and 0.5 N aqueous
HCl (60 ml). The organic layer was washed with saturated aqueous NaHCO3 (50 ml) and
then ted aqueous NaCl (50 ml). The aqueous layers were extracted in succession with
EtOAc (2x50 ml). The combined organic layers were dried (NazSO4), decanted and
ated. This material was purified by flash column chromatography with 20% EtOAc in
CHZClz. This yielded 124 g (24.8% yield) of product as a mixture of stereoisomers (71:29 as
measured by HPLC integration at 254 nM).
Step 6
I'll/N
0 H
The compound synthesized in Step 6 (725 mg, 2.33 mmol) was dissolved in
methanol (22 ml) and the on was cooled in an ice bath. A solution of LiOH (558 mg,
23.3 mmol, 10 eq.) in water (7.0 ml) was added over 5 min. The ice bath was removed and
the e was stirred for 18 h. The mixture was cooled in an ice bath and water (30 ml)
was added followed by l N aqueous HCl (24 ml), g the reaction temperature below 10
OC. The mixture was partitioned between water (15 ml) and EtOAc (100 ml), and the organic
layer was washed with saturated aqueous NaCl. The aqueous layers were extracted in
succession with EtOAc (30 ml). The combined organic layers were dried (NaZSO4),
decanted, and evaporated to give the acid product as fine white crystals.
Step 7
COOMe
N HN
HN HN /N
/ COOH ”'—OH
CszN,, CszN,,, 0
EDC, HOBt
”HQ DIPEA, DMF ”HQ
'11,, "II,
o H o N
] To a dry lOO—ml flask with magnetic stir bar was added the carboxylic acid
synthesized in step 6 above (2.33 mmol), L—serine methyl ester hydrochloride (435 mg, 2.8
mmol, 12 eq.), HOBt (378 mg, 2.8 mmol, 12 eq.), anhydrous DMF (25 ml) and
N,N—diisopropylethylamine (1.01 ml, 5.83 mmol, 2.5 eq.). The reaction mixture was cooled
to 0 °C followed by addition of l (537 mg, 2.8 mmol, 12 eq.). The resulting reaction
mixture was stirred at RT for 16 h. The reaction was monitored by LCMS. Most of solvents
were evaporated under reduced pressure. The e was diluted with EtOAc (100 ml)/water
(30 ml). The c phase was separated and the aqueous phase was extracted by EtOAc
(2x20 ml). The combined organic layers were washed by water (40 ml), 10% aqueous
NaHSO4 (40 ml), water (40 ml), saturated NaHCO3 (40 ml), and brine (2 x 40 ml), and then
dried over NagSO4. After concentration, the crude was used directly in the next step.
Step 8
COOMe
O CszN
Deoxo-Fluor
”II’N
O H
To a dry flask were added the crude product from Step 8 above (2.33 mmol) and
ous CHZClz (40 n11). The reaction solution became cloudy as it was cooled to —20°C in
a dry ice/acetone/water bath. A freshly made stock on of Bis(2—
methoxyethyl)aminosulfur trifluoride (0.644 ml, 0.022 mmol, 2.8 eq.) in CH2C12 (4 ml) was
added dropwise. The ing reaction mixture was stirred at —20 °C for 1 h, and warmed to
room temperature. The reaction mixture was quenched by addition of saturated aqueous
NaHCO3 (20 ml), diluted with EtOAc (100 ml), washed with water (2 x 30 ml) as well as
brine (30 ml), and dried over NagSO4. After concentration the residue was used in next step.
Step 9
CBrCIs, DBU
To a dry flask containing the crude product from step 8 above (2.33 mmol) were
added anhydrous CHzClz (40 ml). The mixture was cooled to 0°C. Then CBrCl3 (0.345 ml,
3.5 mmol, 1.5 eq.) and DBU (0.523 ml, 3.5 mmol, 1.5 eq.) were added respectively. The
resulting mixture was allowed to warm to room temperature and was d for l h. The
reaction was monitored by LCMS. The reaction mixture was diluted with EtOAc (100 ml),
washed by 10% NaHSO4 (30 ml), water (2x30 ml), saturated aqueous NaHCO3 (30 ml),
water (30 ml) and brine (30 ml), dried over NagSO4. After tration the residue was
used in next step.
Step 10
Pd/C
.|\\ ”H
‘11,, '11,,
o H o N
To a 50—ml flask containing al synthesized in Step 9 above (400 mg, 0.58
mmol) were added ol (15 ml), t—butylamine (0.086 ml, 0.87 mmol, 15 eq.) and Pd/C
(10%) (62 mg, 0.058 mmol, 01 eq.) under N2. H2 balloon was added and the flask was
purged with Hz for 4 times. Then H2 balloon was opened to the reaction system. After 4 h
stirring almost no starting material remained. The reaction was stopped. The reaction
mixture was ed through a pad of Celite and the black cake was washed with methanol (3
x 10 ml). The filtrate was concentrated and the residue was used in next step directly without
further purification.
Step 11
EDC, HOBt
DIPEA, DMF
To a dry 25—ml flask containing the amine synthesized in Step 10 above (0.58 mmol)
were added (S)—(+)—2—Hydroxy—3—methylbutanoic acid (82 mg, 0.696 mmol, 12 eq.), HOBt
(94 mg, 0.696 mmol, 1.2 eq.), anhydrous DMF (8 ml) and N,N—diisopropylethylamine (0.152
ml, 0.87 mmol, 1.5 eq.). The on mixture was cooled to 0 °C followed by addition of
EDC‘HCl (133 mg, 0.696 mmol, 1.2 eq.). The ing reaction mixture was stirred at room
temperature for 16 h. The on was monitored by LCMS. The reaction mixture was
diluted with EtOAc (80 ter (30 ml). The organic phase was separated and the aqueous
phase was extracted by EtOAc (2x20 ml). The ed organic layers were washed by
water (30 mL), 10% aqueous NaHSO4 (30 ml), water (30 ml), ted NaHCO3 (30 ml),
and brine (2 x 30 ml), and then dried over NagSO4. After concentration, the crude was used
ly in the next step.
Step 12
UBH4
THF/i-PrOH
To a dry flask were added crude material synthesized in Step 11 (0.58 mmol), THF
(4 ml) and 2—propanol (12 ml). This solution was cooled to 0 °C followed by addition of
solid lithium borohydride (152 mg, 6.96 mmol, 12 eq.). The resulting mixture was allowed to
warm to room temperature and stirred for 22 h. The reaction was monitored with LCMS.
Almost no starting material remained. The reaction mixture was cooled to 0 OC. 2—Propanol
(24 ml) and water (40 ml) were added followed by addition of NH4Cl (3.1 g, 58 mmol, 100
eq.). The reaction e was stirred for 1 h and diluted with EtOAc (250 ml)/water (50 ml).
The organic phase was separated and the aqueous phase was extracted by EtOAc (2 x 50 ml).
The combined organic layers were washed by water (3x50 ml), 10% NaHSO4 (2x50 ml),
water (2x50 ml), saturated NaHCO3 (50 ml), and brine (2 x 50ml), and then dried over
NagSO4. After concentration the residue was purified by flash column chromatography
(EtOAc to 10% EtOAc/MeOH) to afford desired product as an off—white solid (188mg, 0.108
mmol, 52% for three steps). MS: m/z = 627.9 (M+1).
Synthesis of Compound 81
Step 1
H2N H3N CI
COOH COOMe
TMSCI
F F
/ MeOH /
N N
H H
To a dry 250—ml flask were added o—DL—tryptophane (5.0 g, 22.5 mmol), and
anhydrous methanol (120 ml). The suspension was cooled to 0°C followed by on of
chlorotrimethyl silane (12.8 ml, 101.3 mmol, 4.5 eq.) in such a rate to keep the reaction
temperature below 6°C. The resulting reaction mixture was stirred at room temperature for 20
h. The reaction was monitored by TLC. Most volatile substances were evaporated under
reduced pressure. The crude was used in next step.
Step 2
e e H
HsN CI Cbz\N N COOMe
COOMe H
(3sz\ OH
+ e /
F peptide coupling NH
To a dry 250—ml flask with magnetic stir bar was added the amine salt synthesized in
step 1 above (22.5 mmol.), Cbz—L—valine (6.22 g, 24.75 mmol, 1.1 eq.), HOBt (3.34 g, 24.75
mmol, 1.1 eq.), anhydrous DMF (80 ml) and isopropylethylamine (11.8 ml, 67.5
mmol, 3.0 eq.). The reaction mixture was cooled to 0 OC followed by on of EDC‘HCl
(4.74 g, 24.75 mmol, 1.1 eq.). The resulting reaction mixture was stirred at RT for 16 h. The
reaction was monitored by LCMS. Most of solvents were evaporated under reduced
re. Then the residue was diluted with EtOAc (600 ml)/water (200 ml). The organic
phase was separated and the aqueous phase was extracted by EtOAc (2x50 ml). The
combined organic layers were washed by water (100 ml), 10% aqueous NaHSO4 (100 ml),
water (100 ml), ted NaHCO3 (100 ml), and brine (2 x 100 ml), and then dried over
Na2SO4. After concentration, the crude was used directly in the next step.
Step 3
“x0H Cbz LN
Cbz\ N COOMe \N / COOMe
DDQ H /
A solution of DDQ (12.8 g, 56.25 mmol, 2.5 eq.) in THF (500 ml) was added to the
refluxing solution of the compound synthesized in Step 2 above (22.5 mmol) in THF (250
ml) and the dark solution was kept in reflux in an oil bath at 85 °C for l h. After cooling, the
solvent was removed on a rotary evaporator. The residue was dissolved in ethyl acetate (600
ml), and NaHCO3 (13 g) was added. The e was d for l h followed by filtration
h a fritted funnel. The filtrate was washed by water (200 ml), aqueous saturated
NaHCO3 (2 x 200 ml), water (2 x 200 ml), brine (100 ml) and dried over Na2SO4. After
concentration, the mixture was purified by flash column chromatography (5% EtOAc in
CH2Cl2). This yielded 4.63 g (44.2% yield) of product.
] Step 4
Pd/C
To a 250—ml flask containing material synthesized in Step 3 above (4.63 g, 9.94
mmol) was added methanol (50 ml) and Pd/C (10%) (530 mg, 0.497 mmol, 0.05 eq.) under
N2. H2 balloon was added and the flask was purged with H2 for 4 times. Then H2 balloon
was opened to the reaction system. After 1 h stirring almost no starting material ed.
The reaction was stopped. The reaction mixture was filtered through a pad of Celite and the
black cake was washed with methanol (3 x 15 ml). The filtrate was concentrated and the
residue was used in next step directly without further purification.
Step 5
OH F
To a dry 100—ml flask with magnetic stir bar was added the amine synthesized in
step 4 (9.94 mmol), tyrosine (3.45 g, 10.93 mmol, 1.1 eq.), HOBt (1.48 g, 10.93
mmol, 1.1 eq.), anhydrous DMF (30 ml). The reaction mixture was cooled to 0 °C followed
by addition of EDC‘HCl (2.10 g, 10.93 mmol, 1.1 eq.). The resulting reaction mixture was
stirred at RT for 16 h. The reaction was monitored by LCMS. The reaction mixture was
diluted with EtOAc (400 ml)/water (150 ml). The organic phase was separated and the
aqueous phase was ted by EtOAc (2x100 ml). The combined organic layers were
washed by water (200 ml), 10% aqueous NaHSO4 (150 ml), water (150 ml), saturated
NaHCO3 (150 ml), and brine (2 x 100 ml), and then dried over NaZSO4. After concentration,
the crude (6.58 g) was used directly in the next step.
Step 6
COOMe
H HRIV/ ,
K2C03, Et4N+BF4'
/ 1.6 v
An ochemical cell was assembled using a glass cylinder (6 cm diameter x 11
cm height) and a custom rack (polypropylene and nylon) which supported 9 vertical te
rods (6.15 mm diameter x 12 cm length). The rods were arranged in a n of a ring with 6
anodes and 3 cathodes. Electrodes were immersed to a depth of 6.5 cm. The phenolic
material synthesized in Step 5 above (2.00 g, 3.18 mmol), Et4NBF4 (2.00 g, 9.2 mmol, 3 eq.),
2012/033715
K2C03(0.44 g, 3.18 mmol, 1.0 eq.) and ID water (4 ml) were added in DMF (200 ml). The
solution was stirred vigorously in a stir plate (approx. 600 rpm). The electrochemical
reaction was carried out at a potential of 1.5—1.6 volts. After 3 days, most of the original SM
was consumed as ined by HPLC integration at 220 nM. The electrochemistry reaction
was ed for 4 times to consume all phenolic material synthesized in step 5. The
combined reaction mixtures were concentrated on a rotary evaporator (bath temp. g 35 OC)
and dried further on a vacuum manifold. The e was diluted with EtOAc (500 ml)
followed by filtration through a fritted funnel. The filtrate was washed by water (2 x 200 ml),
brine (200 ml). The aqueous layers were extracted in succession with EtOAc (2x50 ml). The
combined organic layers were dried (NaZSO4) and trated. This material was purified
by flash column chromatography with 15% MeCN in CH2C12. This yielded 900 mg of desired
product with 14 % yield in three steps.
Step 7
.,,,I
O H o N
The compound synthesized in Step 6 (900 mg, 1.43 mmol) was dissolved in
methanol (28 ml) and the solution was cooled in an ice bath. A solution of LiOH (344 mg,
14.3 mmol, 10 eq.) in water (4.5 ml) was added over 5 min. The ice bath was removed and
the mixture was stirred at RT for 18 h. The mixture was cooled in an ice bath and water (40
ml) was added ed by 1 N aqueous HCl (14.5 ml), keeping the reaction temperature
below 10 OC. The mixture was partitioned between water (25 ml) and EtOAc (200 ml), and
the organic layer was washed with saturated aqueous NaCl. The aqueous layers were
extracted in succession with EtOAc (50 ml). The combined c layers were dried
(NaZSO4), ed, and evaporated to give the acid product as fine white crystals.
Step 8
COOMe
/ COOH 2—0H
F EDC,HOBt
DIPEA, DMF
.n‘ ,m
..,,I ”MN
O H O H
To a dry 50—ml flask with magnetic stir bar was added the carboxylic acid
synthesized in step 7 above (1.43 mmol), L—serine methyl ester hydrochloride (268 mg, 1.72
mmol, 12 eq.), HOBt (232 mg, 1.72 mmol, 12 eq.), anhydrous DMF (15 ml) and
isopropylethylamine (0.624 ml, 3.58 mmol, 2.5 eq.). The reaction mixture was cooled
to 0 °C followed by addition of EDC‘HCl (330 mg, 1.72 mmol, 12 eq.). The resulting
reaction mixture was stirred at RT for 16 h. The reaction was monitored by LCMS. Most of
ts were evaporated under reduced pressure. The e was diluted with EtOAc (l50
ml)/water (50 ml). The organic phase was separated and the aqueous phase was extracted by
EtOAc (2x30 ml). The combined organic layers were washed by water (60 ml), 10%
aqueous NaHSO4 (60 ml), water (60 ml), saturated NaHCO3 (60 ml), and brine (2 x 60 ml),
and then dried over NaZSO4. After concentration, the crude was used directly in the next
step.
] Step 9
HRLN COOMe
HN—fi HEN N COOMe
Z—OH /:]/
O Csz N,,,
F Deoxo-Fluor
"'l/ "1,,
o H o N
To a dry flask were added the crude product from Step 8 above (1.43 mmol) and
anhydrous CHZClz (25 ml). The reaction solution became cloudy as it was cooled to —20°C in
a dry ice/acetone/water bath. A freshly made stock solution of Bis(2—
methoxyethyl)aminosulfur trifluoride (0.395 ml, 2.15 mmol, 15 eq.) in CH2C12 (4 ml) was
added dropwise. The resulting reaction e was stirred at —20 °C for l h, and warmed to
2012/033715
room temperature. The reaction mixture was quenched by addition of saturated aqueous
NaHCO3 (15 ml), diluted with EtOAc (100 ml), washed with water (2 x 20 ml) as well as
brine (30 ml), and dried over NagSO4. After concentration the residue was used in next step.
Step 10
CBrCIs, DBU
To a dry flask containing the crude product from step 9 above (1.43 mmol) were
added anhydrous CHZClz (25 ml). The mixture was cooled to 0°C. Then CBrCl3 (0.211 ml,
2.15 mmol, 1.5 eq.) and DBU (0.321 ml, 2.15 mmol, 1.5 eq.) were added respectively. The
resulting e was allowed to warm to room temperature and was stirred for 1 h. The
reaction was monitored by LCMS. The reaction e was diluted with EtOAc (100 ml),
washed by 10% NaHSO4 (30 ml), water (2 x 30 ml), saturated aqueous NaHCO3 (15 ml),
water (30 ml) and brine (30 ml), dried over NazSO4. After concentration the residue was
used in next step.
Step 11
CszN,,, 0
F H2
Pd/C
o N
To a 100—ml flask containing material synthesized in Step 10 above (1.43 mmol)
were added methanol (20 ml), t—butylamine (0.226 ml, 2.15 mmol, 1.5 eq.) and Pd/C (10%)
(152 mg, 0.143 mmol, 0.1 eq.) under N2. H2 balloon was added and the flask was purged
with Hz for 4 times. Then H2 balloon was opened to the on system. After 4 h stirring
almost no starting material remained. The reaction was stopped. The reaction mixture was
filtered through a pad of Celite and the black cake was washed with ol (3 x 15 ml).
The filtrate was trated and the residue was used in next step directly without further
purification.
Step 12
EDC, HOBt
DIPEA, DMF
To a dry 25—ml flask containing the amine synthesized in Step 11 above (1.43 mmol)
were added (S)—(+)—2—hydroxy—3—methylbutanoic acid (203 mg, 1.72 mmol, 1.2 eq.), HOBt
(232 mg, 1.72 mmol, 1.2 eq.), anhydrous DMF (15 ml) and N,N—diisopropylethylamine
(0.374 ml, 2.15 mmol, 1.5 eq.). The on mixture was cooled to 0 °C followed by
addition of l (330 mg, 1.72 mmol, 1.2 eq.). The resulting reaction mixture was
stirred at room temperature for 16 h. The reaction was monitored by LCMS. The on
mixture was diluted with EtOAc (150 ml)/water (50 ml). The organic phase was separated
and the aqueous phase was extracted by EtOAc (2x30 ml). The combined organic layers
were washed by water (50 ml), 10% aqueous NaHSO4 (50 ml), water (30 ml), saturated
NaHCO3 (50 ml), and brine (2 x 50 ml), and then dried over NaZSO4. After concentration,
the crude was used directly in the next step.
Step 13
LiBH4
THF/i-PrOH
] To a dry flask were added crude material synthesized in Step 12 (1.43 mmol), THF
(13 ml) and 2—propanol (40 ml). This solution was cooled to 0 °C followed by addition of
solid lithium borohydride (467 mg, 21.45 mmol, 15 eq.). The ing mixture was allowed
to warm to room temperature and stirred for 18 h. The reaction was monitored with LCMS.
Almost no starting material remained. The reaction mixture was cooled to 0 OC. anol
(40 ml) and water (80 ml) were added followed by addition of NH4Cl (7.6 g, 143 mmol, 100
eq.). The reaction mixture was stirred for 1 h and diluted with EtOAc (400 ml)/water (100
ml). The organic phase was separated and the aqueous phase was ted by EtOAc (2 x
100 ml). The combined organic layers were washed by water (3x100 ml), 10% NaHSO4
(2x100 ml), water (2x100 ml), saturated NaHCO3 (100 ml), and brine (2 x 100ml), and then
dried over NagSO4. After concentration the residue was purified by flash column
chromatography (Pure EtOAc to 7% MeCN/EtOAc) to afford desired product as an off—white
solid (215mg, 0.340 mmol, 24% for seven steps).
Synthesis of Compound 85
] Step 1
H2N H3N CI
COOH COOMe
TMSCI
F F
/ MeOH /
N N
H H
To a dry 250—ml flask were added 5—fluoro—DL—tryptophane (6.0 g, 27.0 mmol), and
anhydrous methanol (120 ml). The sion was cooled to 0°C followed by addition of
chlorotrimethyl silane (15.4 ml, 121.5 mmol, 4.5 eq.) in such a rate to keep the reaction
temperature below 6°C. The resulting reaction mixture was d at room temperature for 20
h. The reaction was monitored by TLC. Most volatile substances were evaporated under
reduced re. The crude was used in next step.
Step 2
e e H
HsN CI Cbz\N N COOMe
COOMe H
Cbz‘N OH
+ /
F peptide coupling NH
H /
To a dry 250—ml flask with magnetic stir bar was added the amine salt synthesized in
step 1 above (27 mmol.), Cbz—L—(x—t—butylglycine DCHA salt (13.26 g, 29.7 mmol, l.l eq.),
HOBt (4.01 g, 29.7 mmol, l.l eq.), anhydrous DMF (100 ml) and N,N—diisopropylethylamine
(14.1 ml, 81 mmol, 3.0 eq.). The reaction mixture was cooled to 0 °C followed by addition
of EDC‘HCl (5.69 g, 29.7 mmol, l.l eq.). The resulting reaction mixture was stirred at RT
for 16 h. The reaction was monitored by LCMS. Most of solvents were evaporated under
reduced pressure. Then the residue was diluted with EtOAc (700 ml)/water (200 ml). The
organic phase was separated and the aqueous phase was ted by EtOAc (2x50 ml). The
combined organic layers were washed by water (100 ml), 10% aqueous NaHSO4 (100 ml),
water (100 ml), saturated NaHCO3 (100 ml), and brine (2 x 100 ml), and then dried over
NaZSO4. After concentration, the crude was used directly in the next step.
] Step 3
Cbz\ N COOMe CbZ\N /N COOMe
H DDQ H /
o THF 0
NH reflux
A solution of DDQ (15.32 g, 67.5 mmol, 2.5 eq.) in THF (100 ml) was added to the
ng solution of the compound sized in Step 2 above (27 mmol) in THF (300 ml)
and the dark solution was kept in reflux in an oil bath at 85 °C for l h. After cooling, the
WO 45255
solvent was removed on a rotary evaporator. The residue was dissolved in ethyl acetate (700
ml), and NaHCO3 (15 g) was added. The mixture was stirred for 1 h followed by filtration
through a fritted funnel. The filtrate was washed by water (200 ml), aqueous saturated
NaHCO3 (2x200 ml), water (2x200 ml), brine (100 ml) and dried over NagSO4. After
concentration, the mixture was purified by flash column chromatography (5% EtOAc in
). This yielded 6.42 g (50% yield) of t.
Step 4
CbZ \
N /N COOMe /N
H H2N COOMe
O / 2
Pd/C
\ \
NH NH
F F
To a 250—ml flask containing material synthesized in Step 3 above (6.42 g, 13.4
mmol) was added methanol (60 ml) and Pd/C (10%) (1.43 g, 1.34 mmol, 0.1 eq.) under N2.
H2 n was added and the flask was purged with Hg for 4 times. Then H2 balloon was
opened to the reaction system. After 1 h stirring almost no starting material remained. The
reaction was stopped. The reaction mixture was filtered through a pad of Celite and the black
cake was washed with methanol (3 x 15 ml). The filtrate was trated and the residue
was used in next step directly without further purification.
Step 5
To a dry 100—ml flask with magnetic stir bar was added the amine synthesized in
step 4 (13.4 mmol), tyrosine (4.65 g, 14.74 mmol, 1.1 eq.), HOBt (2.0 g, 14.74 mmol,
1.1 eq.), anhydrous DMF (40 ml). The reaction mixture was cooled to 0 °C followed by
addition of EDC‘HCl (2.83 g, 14.74 mmol, 1.1 eq.). The resulting reaction mixture was
stirred at RT for 16 h. The reaction was monitored by LCMS. The reaction mixture was
2012/033715
d with EtOAc (500 ml)/water (150 ml). The organic phase was separated and the
aqueous phase was extracted by EtOAc (2X100 n11). The combined organic layers were
washed by water (200 ml), 10% aqueous NaHSO4 (150 ml), water (150 ml), saturated
NaHCO3 (150 ml), and brine (2 X 100 ml), and then dried over NagSO4. After concentration,
the crude was used directly in the next step.
Step 6
/ C ZH
: F ’1,
K2CO3: Et4N B 4—
/ 1.6V
o N
] An electrochemical cell was assembled using a glass cylinder (6 cm diameter X 11
cm height) and a custom rack (polypropylene and nylon) which supported 9 vertical graphite
rods (6.15 mm diameter X 12 cm length). The rods were arranged in a pattern of a ring with 6
anodes and 3 cathodes. Electrodes were immersed to a depth of 6.5 cm. The ic
material synthesized in Step 5 above (2.00 g, 3.11 mmol), 4 (2.00 g, 9.2 mmol, 3 eq.),
0.409 g, 2.96 mmol, 0.95 eq.) and ID water (4 ml) were added in DMF (200 ml). The
solution was d vigorously in a stir plate (appr0X. 600 rpm). The electrochemical
reaction was carried out at a potential of 1.5—1.6 volts. After 3 days, most of the original SM
was consumed as determined by HPLC integration at 220 nM. The electrochemistry reaction
was repeated for 4 times to consume all phenolic material synthesized in step 5. The
combined reaction miXtures were concentrated on a rotary evaporator (bath temp. g 35 OC)
and dried further on a vacuum manifold. The residue was diluted with EtOAc (500 ml)
followed by filtration through a fritted funnel. The filtrate was washed by water (2 X 200 ml)
brine (200 ml). The aqueous layers were eXtracted in succession with EtOAc (2X50 ml). The
combined organic layers were dried (NazSO4) and concentrated. This material was purified
by flash column chromatography with 15% MeCN in . This yielded 553 mg of desired
product with 6.4 % yield in three steps.
Step 7
"II/N
The compound synthesized in Step 6 (553 mg, 0.863 mmol) was dissolved in
methanol (17 ml) and the solution was cooled in an ice bath. A on of LiOH (207 mg,
8.63 mmol, 10 eq.) in water (2.7 ml) was added over 5 min. The ice bath was removed and
the mixture was stirred at RT for 18 h. The mixture was cooled in an ice bath and water (20
ml) was added followed by 1 N aqueous HCl (8.8 ml), keeping the on temperature
below 10 OC. The mixture was partitioned between water (15 ml) and EtOAc (100 ml), and
the organic layer was washed with saturated aqueous NaCl. The aqueous layers were
extracted in sion with EtOAc (30 ml). The combined organic layers were dried
(NaZSO4), decanted, and evaporated to give the acid product as fine white crystals.
Step 8
COOMe
N N HN
HN / HN —,
/ COOH ’—OH
CbZHN,,, CbZHNI,, O
F EDC, HOBt F
DIPEA, DMF
.H‘ ”u
"1,, "I”
o H o N
To a dry 50—ml flask with magnetic stir bar was added the ylic acid
synthesized in step 7 above (0.863 mmol), L—serine methyl ester hydrochloride (161 mg,
1.036 mmol, 1.2 eq.), HOBt (140 mg, 1.036 mmol, 1.2 eq.), anhydrous DMF (15 ml) and
N,N—diisopropylethylamine (0.346 ml, 1.99 mmol, 2.3 eq.). The reaction mixture was cooled
to 0 °C followed by addition of EDC‘HCl (199 mg, 1.036 mmol, 1.3 eq.). The resulting
reaction e was stirred at RT for 16 h. The reaction was monitored by LCMS. Most of
solvents were evaporated under reduced pressure. The residue was diluted with EtOAc (100
ml)/water (30 ml). The organic phase was separated and the aqueous phase was ted by
EtOAc (2x20 ml). The combined organic layers were washed by water (40 ml), 10%
aqueous NaHSO4 (40 ml), water (40 ml), saturated NaHCO3 (40 ml), and brine (2 x 40 ml),
and then dried over NaZSO4. After concentration, the crude was used directly in the next
step.
Step 9
COOMe
CszN,,,
Deoxo-Fluor
To a dry flask were added the crude t from Step 8 above (0.863 mmol) and
anhydrous CHzClz (15 n11). The reaction solution became cloudy as it was cooled to —20°C in
a dry ice/acetone/water bath. A freshly made stock solution of Bis(2—
methoxyethyl)aminosulfur trifluoride (0.239 ml, 1.29 mmol, 1.5 eq.) in CHZClz (2 ml) was
added dropwise. The resulting reaction mixture was stirred at —20 °C for 1 h, and warmed to
room temperature. The reaction mixture was quenched by addition of saturated aqueous
NaHCO3 (10 ml), diluted with EtOAc (50 ml), washed with water (2 x 15 ml) as well as brine
(20 ml), and dried over NaZSO4. After concentration the residue was used in next step.
] Step 10
CBrCIs, DBU
] To a dry flask containing the crude product from step 9 above (0.866 mmol) were
added anhydrous CHZClz (15 ml). The mixture was cooled to 0°C. Then CBrCl3 (0.128 ml,
1.29 mmol, 1.5 eq.) and DBU (0.193 ml, 1.29 mmol, 1.5 eq.) were added respectively. The
resulting mixture was d to warm to room temperature and was stirred for 1 h. The
reaction was monitored by LCMS. The reaction mixture was diluted with EtOAc (50 ml),
washed by 10% NaHSO4 (15 ml), water (2 x 15 n11), saturated aqueous NaHCO3 (15 ml),
water (15 ml) and brine (15 ml), dried over NagSO4. After concentration the e was
used in next step.
Step 11
HN /N]/COOMe N
HN /N]/COOMe
CszN,,, 0 H2N, o
F H2 F
Pd/C
"'II "'II
o H o H
To a 50—ml flask containing material synthesized in Step 10 above (0.863 mmol)
were added methanol (12 ml), t—butylamine (0.137 ml, 1.3 mmol, 1.5 eq.) and Pd/C (10%)
(91 mg, 0.0863 mmol, 0.1 eq.) under N2. H2 balloon was added and the flask was purged
with H2 for 4 times. Then H2 balloon was opened to the reaction system. After 4 h stirring
almost no starting material ed. The reaction was stopped. The reaction mixture was
filtered through a pad of Celite and the black cake was washed with methanol (3 x 10 ml).
The filtrate was concentrated and the residue was used in next step directly t further
purification.
] Step 12
EDC, HOBt
DIPEA, DMF
To a dry 25—ml flask containing the amine synthesized in Step 11 above (0.863
mmol) were added (S)—(+)—2—hydroxy—3—methylbutanoic acid (122 mg, 1.036 mmol, 1.2 eq.),
HOBt (140 mg, 1.036 mmol, 1.2 eq.), anhydrous DMF (10 ml) and
WO 45255
N,N—diisopropylethylamine (0.225 ml, 1.29 mmol, 1.5 eq.). The reaction mixture was cooled
to 0 °C followed by addition of EDC‘HCl (199 mg, 1.036 mmol, 1.2 eq.). The resulting
reaction mixture was stirred at room temperature for 16 h. The reaction was monitored by
LCMS. The reaction e was diluted with EtOAc (100 ml)/water (30 ml). The organic
phase was separated and the s phase was extracted by EtOAc (2x20 ml). The
combined organic layers were washed by water (30 ml), 10% aqueous NaHSO4 (30 ml),
water (30 ml), ted NaHCO3 (30 ml), and brine (2 x 30 ml), and then dried over NagSO4.
After concentration, the crude was used ly in the next step.
Step 13
UBH4
THF/i-PrOH
To a dry flask were added crude material synthesized in Step 12 (0.863 mmol), THF
(10 ml) and 2—propanol (30 ml). This solution was cooled to 0 °C followed by addition of
solid lithium borohydride (282 mg, 12.95 mmol, 15 eq.). The resulting mixture was allowed
to warm to room temperature and stirred for 22 h. The reaction was monitored with LCMS.
Almost no starting material remained. The reaction mixture was cooled to 0 OC. 2—Propanol
(24 ml) and water (40 ml) were added followed by addition of NH4Cl (4.6 g, 86.3 mmol, 100
eq.). The reaction mixture was stirred for 1 h and diluted with EtOAc (250 ml)/water (50 ml).
The organic phase was separated and the aqueous phase was extracted by EtOAc (2 x 50 ml).
The combined c layers were washed by water (3x100 ml), 10% NaHSO4 (2x100 ml),
water (2x100 ml), saturated NaHCO3 (100 ml), and brine (2 x 100ml), and then dried over
NagSO4. After concentration the residue was purified by flash column chromatography (70%
EtOAc/DCM) to afford desired product as an off—white solid (124mg, 0.192 mmol, 22% for
seven .
Synthesis of Compound 86
Step 1
H2N H3N CI
COOH COOMe
TMSCI
F F
/ MeOH /
N N
H H
To a dry 250—ml flask were added 5—fluoro—DL—tryptophane (5.0 g, 22.5 mmol), and
anhydrous methanol (120 ml). The suspension was cooled to 0°C followed by addition of
chlorotrimethyl silane (12.8 ml, 101.3 mmol, 4.5 eq.) in such a rate to keep the reaction
temperature below 6°C. The resulting reaction e was stirred at room temperature for 20
h. The reaction was monitored by TLC. Most volatile substances were evaporated under
reduced re. The crude was used in next step.
Step 2
e e H
HsN CI Cbz\N N COOMe
Cbz\Hx(OH COOMe H
—, O
+ /
F peptidecoupling NH
To a dry 250—ml flask with magnetic stir bar was added the amine salt synthesized in
step 1 above (22.5 mmol.), Cbz—L—valine (6.22 g, 24.75 mmol, l.l eq.), HOBt (3.34 g, 24.75
mmol, l.l eq.), anhydrous DMF (80 ml) and N,N—diisopropylethylamine (l 1.8 ml, 67.5
mmol, 3.0 eq.). The reaction mixture was cooled to 0 OC followed by addition of EDC‘HCl
(4.74 g, 24.75 mmol, l.l eq.). The ing reaction mixture was stirred at RT for 16 h. The
reaction was monitored by LCMS. Most of solvents were evaporated under d
pressure. Then the residue was d with EtOAc (600 ml)/water (200 ml). The organic
phase was separated and the aqueous phase was extracted by EtOAc (2x50 ml). The
combined organic layers were washed by water (100 ml), 10% aqueous NaHSO4 (100 ml),
water (100 ml), ted NaHCO3 (100 ml), and brine (2 x 100 ml), and then dried over
Na2SO4. After concentration, the crude was used directly in the next step.
Step 3
H Cbz LN
v N COOMe \N / COOMe
DDQ H /
A solution of DDQ (12.8 g, 56.25 mmol, 2.5 eq.) in THF (500 ml) was added to the
refluxing solution of the compound synthesized in Step 2 above (22.5 mmol) in THF (250
ml) and the dark solution was kept in reflux in an oil bath at 85 °C for l h. After cooling, the
solvent was removed on a rotary evaporator. The residue was dissolved in ethyl acetate (600
ml), and NaHCO3 (13 g) was added. The mixture was stirred for l h followed by filtration
h a fritted funnel. The filtrate was washed by water (200 ml), aqueous ted
NaHCO3 (2 x 200 ml), water (2 x 200 ml), brine (100 ml) and dried over Na2SO4. After
concentration, the e was purified by flash column chromatography (5% EtOAc in
CH2Cl2). This yielded 4.63 g (44.2% yield) of product.
Step 4
CbZ Nj:(/N\
COOMe HgNrr/N COOMe
H H2
O / /
\ \
NH NH
To a 250—ml flask containing material synthesized in Step 3 above (4.63 g, 9.94
mmol) was added ol (50 ml) and Pd/C (10%) (530 mg, 0.497 mmol, 0.05 eq.) under
N2. H2 balloon was added and the flask was purged with H2 for 4 times. Then H2 balloon
was opened to the reaction system. After 1 h stirring almost no starting material remained.
The reaction was stopped. The reaction mixture was filtered through a pad of Celite and the
black cake was washed with methanol (3 x 15 ml). The filtrate was concentrated and the
residue was used in next step directly without further purification.
Step 5
OH F
To a dry 100—ml flask with magnetic stir bar was added the amine synthesized in
step 4 (9.94 mmol), tyrosine (3.45 g, 10.93 mmol, 1.1 eq.), HOBt (1.48 g, 10.93
mmol, 1.1 eq.), anhydrous DMF (30 ml). The reaction mixture was cooled to 0 °C followed
by addition of EDC‘HCl (2.10 g, 10.93 mmol, 1.1 eq.). The resulting reaction mixture was
stirred at RT for 16 h. The on was monitored by LCMS. The reaction mixture was
diluted with EtOAc (400 ml)/water (150 ml). The c phase was separated and the
aqueous phase was extracted by EtOAc (2x100 ml). The combined organic layers were
washed by water (200 ml), 10% aqueous NaHSO4 (150 ml), water (150 ml), saturated
NaHCO3 (150 ml), and brine (2 x 100 ml), and then dried over NaZSO4. After concentration,
the crude (6.58 g) was used directly in the next step.
Step 6
H HRIV/ COOMGF CszN,,,
K2C03, Et4N+BF4'
/ 1.6 v
An electrochemical cell was assembled using a glass cylinder (6 cm diameter x 11
cm height) and a custom rack (polypropylene and nylon) which supported 9 al graphite
rods (6.15 mm diameter x 12 cm length). The rods were ed in a pattern of a ring with 6
anodes and 3 cathodes. Electrodes were immersed to a depth of 6.5 cm. The phenolic
material sized in Step 5 above (2.00 g, 3.18 mmol), Et4NBF4 (2.00 g, 9.2 mmol, 3 eq.),
K2C03(0.44 g, 3.18 mmol, 1.0 eq.) and ID water (4 ml) were added in DMF (200 ml). The
on was stirred vigorously in a stir plate (approx. 600 rpm). The electrochemical
reaction was carried out at a potential of 1.5—1.6 volts. After 3 days, most of the original SM
was consumed as determined by HPLC integration at 220 nM. The electrochemistry reaction
was repeated for 4 times to consume all phenolic material synthesized in step 5. The
combined reaction mixtures were concentrated on a rotary evaporator (bath temp. g 35 OC)
and dried r on a vacuum manifold. The residue was diluted with EtOAc (500 ml)
ed by filtration through a fritted funnel. The te was washed by water (2 x 200 ml),
brine (200 ml). The s layers were extracted in succession with EtOAc (2x50 ml). The
combined organic layers were dried (NaZSO4) and concentrated. This material was purified
by flash column chromatography with 15% MeCN in CH2C12. This yielded 900 mg of desired
product with 14 % yield in three steps.
Step 7
.,,,I
O H o N
] The compound synthesized in Step 6 (900 mg, 1.43 mmol) was ved in
methanol (28 ml) and the solution was cooled in an ice bath. A solution of LiOH (344 mg,
14.3 mmol, 10 eq.) in water (4.5 ml) was added over 5 min. The ice bath was removed and
the mixture was stirred at RT for 18 h. The e was cooled in an ice bath and water (40
ml) was added followed by 1 N aqueous HCl (14.5 ml), keeping the reaction temperature
below 10 OC. The mixture was partitioned between water (25 ml) and EtOAc (200 ml), and
the organic layer was washed with saturated aqueous NaCl. The aqueous layers were
extracted in succession with EtOAc (50 ml). The combined organic layers were dried
(NaZSO4), decanted, and evaporated to give the acid product as fine white crystals.
Step 8
COOMe
/ COOH ¢_OH
CszN,,, CszN,,, 0
F EDC,HOBt F
DIPEA, DMF
.n‘ ,m
"'I] "I,
o H o 'H
To a dry 50—ml flask with ic stir bar was added the carboxylic acid
synthesized in step 7 above (1.43 mmol), L—serine methyl ester hydrochloride (268 mg, 1.72
mmol, 1.2 eq.), HOBt (232 mg, 1.72 mmol, 1.2 eq.), anhydrous DMF (15 ml) and
N,N—diisopropylethylamine (0.624 ml, 3.58 mmol, 2.5 eq.). The reaction e was cooled
to 0 °C followed by addition of EDC‘HCl (330 mg, 1.72 mmol, 1.2 eq.). The resulting
reaction mixture was stirred at RT for 16 h. The reaction was monitored by LCMS. Most of
solvents were evaporated under reduced pressure. The residue was d with EtOAc (150
ml)/water (50 ml). The organic phase was separated and the aqueous phase was extracted by
EtOAc (2x30 ml). The ed c layers were washed by water (60 ml), 10%
aqueous NaHSO4 (60 ml), water (60 ml), saturated NaHCO3 (60 ml), and brine (2 x 60 ml),
and then dried over NaZSO4. After concentration, the crude was used directly in the next
step.
Step 9
Hé:[;¢N COOMe
HN—{ H;:[;¢N N COOMe
Z—OH /:]/
O Csz N,,,
F Deoxo-Fluor
"'l/ "1,,
o H o N
To a dry flask were added the crude product from Step 8 above (1.43 mmol) and
anhydrous CHzClz (25 ml). The reaction on became cloudy as it was cooled to —20°C in
a dry ice/acetone/water bath. A freshly made stock solution of Bis(2—
methoxyethyl)aminosulfur trifluoride (0.395 ml, 2.15 mmol, 1.5 eq.) in CHZClz (4 ml) was
added dropwise. The resulting reaction mixture was stirred at —20 °C for 1 h, and warmed to
room temperature. The reaction mixture was quenched by addition of saturated aqueous
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NaHCO3 (15 ml), diluted with EtOAc (100 ml), washed with water (2 x 20 ml) as well as
brine (30 ml), and dried over NaZSO4. After concentration the residue was used in next step.
Step 10
CBrCIs, DBU
To a dry flask ning the crude product from step 9 above (1.43 mmol) were
added anhydrous CHzClz (25 ml). The mixture was cooled to 0°C. Then CBrCl3 (0.211 ml,
2.15 mmol, 1.5 eq.) and DBU (0.321 ml, 2.15 mmol, 1.5 eq.) were added tively. The
ing mixture was allowed to warm to room temperature and was stirred for 1 h. The
reaction was monitored by LCMS. The reaction mixture was diluted with EtOAc (100 ml),
washed by 10% NaHSO4 (30 ml), water (2 x 30 ml), saturated aqueous NaHCO3 (15 ml),
water (30 ml) and brine (30 ml), dried over NaZSO4. After concentration the residue was
used in next step.
Step 11
To a flask were added the product from step 10 (0.735 mmol), methanol (30 ml),
aqueous ammonia solution (28%, 15 ml). The resulting reaction mixture was stirred at room
temperature for 24 hrs. The reaction was monitored by TLC. Most of ol was
evaporated under reduced pressure. The residue was extracted by ethyl acetate (3 x 30 ml),
washed with 2% NaHSO4 (30 ml), water (30 ml), 5% NaHCO3 (30 ml), brine (30 ml). The
organic phase was dried over NaZSO4. After concentration, the crude was used in next step.
Step 12
CszN,,, 0 H2N, o
F H2 F
Pd/C
”I” '11,,
o H o H
To a 100—ml flask containing material synthesized in Step 11 above (0.735 mmol)
were added methanol (20 ml), t—butylamine (0.116 ml, 1.1 mmol, 1.5 eq.) and Pd/C (10%)
(78 mg, 0.052 mmol, 0.1 eq.) under N2. H2 balloon was added and the flask was purged with
Hz for 4 times. Then H2 balloon was opened to the reaction system. After 4 h stirring almost
no starting material remained. The reaction was d. The on mixture was filtered
through a pad of Celite and the black cake was washed with methanol (3 x 15 ml). The
filtrate was concentrated and the residue was used in next step directly without r
purification.
Step 13
EDC, HOBt
DIPEA, DMF
To a dry 25—ml flask containing the amine synthesized in Step 12 above (0.735
mmol) were added (S)—(+)—2—hydroxy—3—methylbutanoic acid (104 mg, 0.882 mmol, 1.2 eq.),
HOBt (119 mg, 0.882 mmol, 1.2 eq.), anhydrous DMF (10 ml) and
N,N—diisopropylethylamine (0.192 ml, 1.1 mmol, 1.5 eq.). The on mixture was cooled
to 0 °C followed by addition of EDC‘HCl (169 mg, 0.882 mmol, 1.2 eq.). The resulting
on mixture was stirred at room temperature for 16 h. The reaction was monitored by
LCMS. The reaction mixture was diluted with EtOAc (100 ml)/water (30 ml). The organic
phase was separated and the aqueous phase was extracted by EtOAc (2 x 30 ml). The
combined organic layers were washed by water (50 ml), 10% aqueous NaHSO4 (50 ml),
water (30 ml), saturated NaHCO3 (50 ml), and brine (2 x 50 ml), and then dried over Na2SO4.
After tration, the crude was used directly in the next step.
] Step 14
1) (CF3CO)ZO
Dioxane/DCM
2) NH3/HZO
To a dry flask were added crude material synthesized in Step 13 (0.735 mmol),
dioxane (10 ml) and CH2C12 (10 ml) and pyridine (1.2 ml, 14.7 mmol). This solution was
cooled to —17°C followed by addition of trifluoroacetic anhydride (1.5 ml, 11 mmol) at —10 to
—17 0C. After addition, the resulting mixture was stirred at —15°C for 1 h. Then aqueous NH3
solution (28% 10 ml) was added dropwise at —15°C followed by warming to room
temperature and stirred for 1 h. The reaction was red with LCMS. Most of t
was moved under reduced pressure. The residue was extracted by ethyl acetate (3 x 20 ml),
washed with water (2 x 20 ml), 5% NaHSO4 (20 ml), water (20 ml), sat. NaHCO3 (20 ml),
water (20 ml) and brine (20ml). The organic phase was dried over Na2SO4. After
concentration the residue was purified by flash column chromatography (30% MeCN/DCM
to 40% MeCN/DCM) to afford desired product as an ite solid , 0.184 mmol,
% for eight steps).
Synthesis of Compound 87
Step 1
H2N H3N CI
COOH COOMe
TMSCI
F F
/ MeOH /
N N
H H
] To a dry 250—ml flask were added 5—fluoro—DL—tryptophane (6.0 g, 27.0 mmol), and
anhydrous methanol (120 ml). The suspension was cooled to 0°C followed by addition of
chlorotrimethyl silane (15.4 ml, 121.5 mmol, 4.5 eq.) in such a rate to keep the reaction
temperature below 6°C. The resulting reaction mixture was stirred at room ature for 20
h. The reaction was monitored by TLC. Most volatile substances were evaporated under
reduced re. The crude was used in next step.
Step 2
o e H
HsN CI Cbz\N N COOMe
COOMe H
Cbz‘N OH
+ /
F peptide coupling NH
H /
To a dry 250—ml flask with magnetic stir bar was added the amine salt synthesized in
step 1 above (27 mmol.), Cbz—L—(x—t—butylglycine DCHA salt (13.26 g, 29.7 mmol, 1.1 eq.),
HOBt (4.01 g, 29.7 mmol, 1.1 eq.), anhydrous DMF (100 ml) and N,N—diisopropylethylamine
(14.1 ml, 81 mmol, 3.0 eq.). The reaction mixture was cooled to 0 °C followed by addition
of l (5.69 g, 29.7 mmol, 1.1 eq.). The resulting reaction mixture was stirred at RT
for 16 h. The reaction was monitored by LCMS. Most of solvents were evaporated under
reduced pressure. Then the residue was diluted with EtOAc (700 ml)/water (200 ml). The
organic phase was separated and the aqueous phase was extracted by EtOAc (2x50 ml). The
combined organic layers were washed by water (100 ml), 10% s NaHSO4 (100 ml),
water (100 ml), saturated NaHCO3 (100 ml), and brine (2 x 100 ml), and then dried over
NagSO4. After concentration, the crude was used directly in the next step.
] Step 3
Cbz\ N COOMe CbZ‘N /N COOMe
H DDQ H /
o THF 0
/ —>
NH reflux
A solution of DDQ (15.32 g, 67.5 mmol, 2.5 eq.) in THF (100 ml) was added to the
refluxing solution of the compound synthesized in Step 2 above (27 mmol) in THF (300 ml)
and the dark solution was kept in reflux in an oil bath at 85 °C for l h. After g, the
solvent was removed on a rotary evaporator. The residue was dissolved in ethyl acetate (700
ml), and NaHCO3 (15 g) was added. The mixture was stirred for l h followed by tion
through a fritted funnel. The filtrate was washed by water (200 ml), aqueous saturated
NaHCO3 (2x200 ml), water (2x200 ml), brine (100 ml) and dried over NagSO4. After
concentration, the mixture was purified by flash column chromatography (5% EtOAc in
CHzClz). This yielded 6.42 g (50% yield) of t.
Step 4
N /N /N
COOMe H2N COOMe
H H
O / _2, O /
Pd/C
\ \
NH NH
F F
To a 250—ml flask containing material synthesized in Step 3 above (6.42 g, 13.4
mmol) was added methanol (60 ml) and Pd/C (10%) (1.43 g, 1.34 mmol, 01 eq.) under N2.
H2 balloon was added and the flask was purged with Hg for 4 times. Then H2 balloon was
opened to the reaction system. After 1 h stirring almost no starting al remained. The
reaction was stopped. The reaction mixture was filtered through a pad of Celite and the black
cake was washed with methanol (3 x 15 ml). The filtrate was concentrated and the residue
was used in next step directly without r purification.
Step 5
HN /
2 COOM EDC
O / HOBt
To a dry 100—ml flask with magnetic stir bar was added the amine synthesized in
step 4 (13.4 mmol), Cbz—L—tyrosine (4.65 g, 14.74 mmol, 1.1 eq.), HOBt (2.0 g, 14.74 mmol,
1.1 eq.), ous DMF (40 ml). The reaction mixture was cooled to 0 °C followed by
addition of EDC‘HCl (2.83 g, 14.74 mmol, 1.1 eq.). The resulting reaction mixture was
stirred at RT for 16 h. The reaction was red by LCMS. The reaction mixture was
diluted with EtOAc (500 ml)/water (150 ml). The organic phase was separated and the
aqueous phase was ted by EtOAc (2x100 ml). The ed organic layers were
washed by water (200 ml), 10% aqueous NaHSO4 (150 ml), water (150 ml), saturated
NaHCO3 (150 ml), and brine (2 x 100 ml), and then dried over NaZSO4. After concentration,
the crude was used directly in the next step.
Step 6
H // COOMeF CszN,,I
Chm/No. O
o K2C03,Et4N+BF4'
/ 1.6V
An electrochemical cell was led using a glass cylinder (6 cm diameter x 11
cm height) and a custom rack (polypropylene and nylon) which supported 9 vertical graphite
rods (6.15 mm diameter x 12 cm length). The rods were arranged in a pattern of a ring with 6
2012/033715
anodes and 3 cathodes. Electrodes were immersed to a depth of 6.5 cm. The phenolic
material synthesized in Step 5 above (2.00 g, 3.11 mmol), Et4NBF4 (2.00 g, 9.2 mmol, 3 eq.),
K2CO3(0.409 g, 2.96 mmol, 0.95 eq.) and ID water (4 ml) were added in DMF (200 ml). The
solution was stirred vigorously in a stir plate (approx. 600 rpm). The electrochemical
reaction was carried out at a potential of 1.5—1.6 volts. After 3 days, most of the original SM
was consumed as determined by HPLC integration at 220 nM. The electrochemistry reaction
was ed for 4 times to consume all phenolic material synthesized in step 5. The
ed reaction mixtures were concentrated on a rotary evaporator (bath temp. g 35 OC)
and dried further on a vacuum manifold. The residue was diluted with EtOAc (500 ml)
followed by filtration through a fritted funnel. The filtrate was washed by water (2 x 200 ml)
brine (200 ml). The aqueous layers were extracted in succession with EtOAc (2x50 ml). The
ed organic layers were dried (NaZSO4) and concentrated. This material was purified
by flash column chromatography with 15% MeCN in CHZClz. This yielded 553 mg of desired
product with 6.4 % yield in three steps.
] Step 7
"II/N
The compound synthesized in Step 6 (553 mg, 0.863 mmol) was dissolved in
methanol (17 ml) and the solution was cooled in an ice bath. A solution of LiOH (207 mg,
8.63 mmol, 10 eq.) in water (2.7 ml) was added over 5 min. The ice bath was d and
the mixture was stirred at RT for 18 h. The mixture was cooled in an ice bath and water (20
ml) was added ed by l N aqueous HCl (8.8 ml), keeping the reaction temperature
below 10 OC. The mixture was partitioned between water (15 ml) and EtOAc (100 ml), and
the organic layer was washed with saturated s NaCl. The aqueous layers were
extracted in succession with EtOAc (30 ml). The combined organic layers were dried
(NaZSO4), decanted, and evaporated to give the acid t as fine white crystals.
Step 8
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COOMe
/ COOH
CszN,,, CszN,,, 0
F EDC, HOBt F
DIPEA, DMF
.H‘ ”u
"1,, "I”
o H o H
To a dry 50—ml flask with magnetic stir bar was added the carboxylic acid
synthesized in step 7 above (0.863 mmol), ne methyl ester hydrochloride (161 mg,
1.036 mmol, 1.2 eq.), HOBt (140 mg, 1.036 mmol, 1.2 eq.), anhydrous DMF (15 ml) and
N,N—diisopropylethylamine (0.346 ml, 1.99 mmol, 2.3 eq.). The reaction mixture was cooled
to 0 °C followed by addition of EDC‘HCl (199 mg, 1.036 mmol, 1.3 eq.). The resulting
reaction mixture was d at RT for 16 h. The reaction was monitored by LCMS. Most of
solvents were evaporated under d pressure. The residue was diluted with EtOAc (100
ml)/water (30 ml). The organic phase was separated and the aqueous phase was ted by
EtOAc (2x20 ml). The combined organic layers were washed by water (40 ml), 10%
aqueous NaHSO4 (40 ml), water (40 ml), saturated NaHCO3 (40 ml), and brine (2 x 40 ml),
and then dried over NaZSO4. After concentration, the crude was used directly in the next
step.
Step 9
COOMe
N HN N N COOMe
HN HN
”—OH / j
CszN,,, 0 CszN,” 0
F Deoxo-Fluor F
"'I/ "1,,
o H o H
To a dry flask were added the crude product from Step 8 above (0.863 mmol) and
anhydrous CHZClz (15 ml). The reaction solution became cloudy as it was cooled to —20°C in
a dry ice/acetone/water bath. A freshly made stock solution of Bis(2—
methoxyethyl)aminosulfur trifluoride (0.239 ml, 1.29 mmol, 1.5 eq.) in CH2C12 (2 ml) was
added dropwise. The resulting reaction mixture was stirred at —20 °C for 1 h, and warmed to
room temperature. The reaction mixture was quenched by addition of saturated aqueous
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NaHCO3 (10 ml), diluted with EtOAc (50 ml), washed with water (2 x 15 ml) as well as brine
(20 ml), and dried over NaZSO4. After concentration the residue was used in next step.
Step 10
CBrCIs, DBU
To a dry flask containing the crude product from step 9 above (0.866 mmol) were
added anhydrous CHZClz (15 ml). The mixture was cooled to 0°C. Then CBrCl3 (0.128 ml,
1.29 mmol, 1.5 eq.) and DBU (0.193 ml, 1.29 mmol, 1.5 eq.) were added respectively. The
resulting mixture was allowed to warm to room temperature and was stirred for 1 h. The
reaction was monitored by LCMS. The reaction mixture was diluted with EtOAc (50 ml),
washed by 10% NaHSO4 (15 ml), water (2 x 15 ml), ted aqueous NaHCO3 (15 ml),
water (15 ml) and brine (15 ml), dried over NaZSO4. After concentration the residue was
used in next step.
Step 11
To a flask were added the product from step 10 (0.52 mmol), methanol (25 ml),
aqueous ammonia solution (28%, 10 ml). The resulting reaction mixture was stirred at room
temperature for 24 hrs. The reaction was monitored by TLC. Most of methanol was
evaporated under d re. The residue was extracted by ethyl acetate (3 x 30 ml),
washed with 2% NaHSO4 (30 ml), water (30 ml), 5% NaHCO3 (30 ml), brine (30 ml). The
organic phase was dried over NaZSO4. After concentration, the crude was used in next step.
Step 12
CszN,,, 0 H2N,, o
F H2 F
Pd/C
"'l/ ‘11,,
o H o N
To a 100—ml flask ning material synthesized in Step 11 above (0.52 mmol)
were added methanol (10 ml), t—butylamine (0.082 ml, 0.78 mmol, 1.5 eq.) and Pd/C (10%)
(55 mg, 0.052 mmol, 0.1 eq.) under N2. H2 balloon was added and the flask was purged with
Hz for 4 times. Then H2 n was opened to the reaction system. After 4 h stirring almost
no starting material remained. The reaction was stopped. The reaction mixture was filtered
through a pad of Celite and the black cake was washed with methanol (3 x 15 ml). The
filtrate was concentrated and the residue was used in next step directly without further
purification.
] Step 13
EDC, HOBt
DIPEA, DMF
To a dry 25—ml flask containing the amine synthesized in Step 12 above (0.52 mmol)
were added )—2—hydroxy—3—methylbutanoic acid (74 mg, 0.624 mmol, 12 eq.), HOBt
(85 mg, 0.624 mmol, 12 eq.), anhydrous DMF (10 ml) and N,N—diisopropylethylamine
(0.136 ml, 0.78 mmol, 15 eq.). The reaction mixture was cooled to 0 °C followed by
addition of EDC‘HCl (120 mg, 0.624 mmol, 12 eq.). The resulting reaction mixture was
stirred at room temperature for 16 h. The reaction was monitored by LCMS. The reaction
mixture was diluted with EtOAc (100 ml)/water (30 ml). The organic phase was ted
and the aqueous phase was extracted by EtOAc (2 x 30 ml). The combined organic layers
were washed by water (50 ml), 10% aqueous NaHSO4 (50 ml), water (30 ml), saturated
NaHCO3 (50 ml), and brine (2 x 50 ml), and then dried over NaZSO4. After concentration,
the crude was used directly in the next step.
Step 14
1) (CFSCO)20
Dioxane/DCM
2) O
] To a dry flask were added crude material synthesized in Step 13 (0.52 mmol),
dioxane (7 ml) and CH2C12 (7 ml) and pyridine (0.841 ml, 14.7 mmol). This solution was
cooled to —l7°C followed by addition of trifluoroacetic anhydride (1.1 ml, 7.8 mmol) at —10 to
—17 0C. After addition, the resulting mixture was stirred at —15°C for 1 h. Then aqueous NH3
on (28% 7 ml) was added dropwise at —15°C followed by warming to room temperature
and stirred for 1 h. The reaction was monitored with LCMS. Most of solvent was moved
under reduced pressure. The residue was extracted by ethyl acetate (3 x 20 ml), washed with
water (2 x 20 ml), 5% NaHSO4 (20 ml), water (20 ml), sat. NaHCO3 (20 ml), water (20 ml)
and brine (20ml). The organic phase was dried over NaZSO4. After concentration the residue
was purified by flash column chromatography (20% MeCN/DCM to 30% CM) to
afford desired product as an off—white solid (51mg, 0.080 mmol, 16% for eight steps).
Cell Viability Assay ol
Cell viability assays were run using rd protocols known to those of skill in
art. Cells were plated in 96 well plates at the density of 3,000—10,000 cells per well. Twenty
four hours later, cells were treated with increasing concentration of test compounds (1 nM to
1 uM). After another 48 hour, cell survival was ed using Cell—Titer—Glo® reagent
(Promega) following the protocol provided by the manufacture. The IC50 value was
ined as the concentration of test compound that kills 50% of the cell population.
entative Biological Data
Cell Viability data generated according to the protocol described above was
generated for representative compounds in A2058 and U937 cells. The compounds shown in
Table l were prepared by the s described herein for structurally similar compounds.
The reference compound was a synthetic diazonamide analog haVing the structure:
Table 1. Cell ity data in A2058 and U937 cells
Compound # Structure IC50 (nM) in IC50 (nM)
cell Viability in cell
assay in Viability
A2058 assay in
U937
I. Oxazole, 4 oxazoyl analogs with esters other than methyl ester in position 4.
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57 21
.99 19.68
70.81 36.91
3. 3 2.88
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IV. e, 4 oxazoyl analogs with cyano—group in position 4
V. Oxazole, 4 oxazoyl analogs with heterocycles in position 4
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>1000 223
53 12
>1000 >1000
257 71
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2012/033715
X. Oxazole, 4—ary1 (non—oxazole) analogs
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11. Oxazole, 4 oxazoyl analogs
] Xenograft Tumor Models
The compounds were tested in HCC461 human lung carcinoma xenograft and
a pancreatic cancer xenograft tumor models in 5— to 6—week—old Harlan Athymic
Nude—Foxnlnu mice.
Protocol:
Preparation of tumor cells
Tumor cells were cultured in complete RPMI medium and excluded any
contamination. When cells are 70—80% confluent, medium was removed and cells were
washed with serum free media, trypsinized, ted and washed with serum free media for
three times by centrifuge. After final washing, cells were d and mixed with matrigel at
1:1 ration in volume. Cells were suspended in a volume that 200 pl contains required number
of cells per injection.
Preparation of the injection
Clean and sterilize the inoculation area of the mice with iodine solutions and
ethanol. Take cells withl—cc syringe. Inject tumor cells (1 X 107) subcutaneously (s.c.) into
the lower flank of the mice. When tumors reached 200—300 mm3 in size, mice were
randomized into treatment groups of five mice per group. Mice were weighed and tumors
measured using vemier rs two times per week. Tumor volume in mm3 is calculated by
the formula: Volume (mm3) = (length x width2)/2.
Treatment
The compounds were dissolved in cremophor/ethanol (l: l) at 20 mg/mL as the stock
solution and then diluted in saline to 2.5 mg/mL. The nds and the vehicle (6.25%
cremophor/6.25% ethanol in saline) were administered enously in a total volume of 0.2
mL three times a week for total siX treatments.
In the HCC46l lung cancer xenograft model, animals were injected on days 7, ll,
14 and 18 post tumor—cell injection.
In the Miapaca pancreatic cancer aft model, s were injected on days 6,
l3, and 20 post tumor—cell injection.
Results
The activities of exemplary compounds and dosages are shown in Figures 1 and 2.
>I< >I< >I<
] The entirety of each patent, patent application, publication and document referenced
herein hereby is incorporated by reference. Citation of the above patents, patent applications,
publications and documents is not an admission that any of the foregoing is pertinent prior
art, nor does it constitute any admission as to the contents or date of these publications or
documents.
Modifications may be made to the ing without departing from the basic
aspects of the invention. Although the invention has been described in substantial detail with
reference to one or more specific embodiments, those of ordinary skill in the art will
ize that changes may be made to the embodiments specifically disclosed in this
application, and yet these modifications and improvements are within the scope and spirit of
the invention.
Claims (20)
- I. Oxazole, 4 oxazoyl analogs with esters other than methyl ester in position 4. 21 Me Me 22 Me Me O O HN N N N OH O OH HN O H H N O O O N O O O O O N N O H O H 23 Me Me 24 Me Me H2 O O N C N N OH HN N O H OH HN O OMe H H N O N O O O O O N O H O H 25 Me Me 26 O O N N P N N OH HN O ONa OH HN O OMe H OH N O H O O N O O O O O N N O H O H II. Oxazole, 4 oxazoyl analogs with alcohol or ketone in position 4 27 Me Me 28 Me Me HN N N OH HN N N OH OH OH H H N O O O O N O O O O N N O O H H 206447NZ_claims_20150813_PLH 29 OH 30 O N N N N OH HN OH HN H H N O O N O O O O O O NH NH 31 OH N N OH HN N O O III. Oxazole, 4 oxazoyl analogs with amide, amine, carbamate or sulfonamide in on 4 32 Me Me 33 Me Me HN N N CH2NHMe HN N N CH2NH2 OH OH H H N O O O O N O O O O N N O H O H 34 Me Me 35 Me Me SO2Me HN N N N N OH HN N OH N OMe H H H H N O N O O O O O O O N N O H O H 36 37 Me Me N N O HN N N O O O O H IV. Oxazole, 4 oxazoyl analogs with cyano-group in position 4 206447NZ_claims_20150813_PLH 38 Me Me 39 Me Me CN CN OH HN N N N N OH HN O H N O O N O O NHAc O O O N N O H O H HN N N CN N O O O Me O H V. e, 4 oxazoyl analogs with heterocycles in position 4 41 Me Me 42 Me Me O O N N N N OH HN O OH HN O H H N O N O O O O O O O N N O H O H 43 Me Me N 44 N N N N N N N OH HN O OH HN H H H N O N O O O O O O O N N O H O H 45 N 46 OH HN N N N N N H H OH HN N N O H O O N O O O O O N N O H O H 206447NZ_claims_20150813_PLH 47 N 48 N N OH HN O N O O O O H VI. Oxazole, 4 oxazoyl analogs with substituents ing isopropyl group 49 50 COOMe COOMe N N OH HN N N H OH HN N O O O N O O O NH O NH 51 52 COOMe COOMe N N N N OH HN OH HN H H N O O N O O O O O O O NH O NH HN N N COOMe 54 N COOMe OH O N N O H O N N O O O O O O H N O H 55 56 N N N N COOMe OH HN OH OH HN N O H O O O N O O O O N N O H O H 206447NZ_claims_20150813_PLH 57 58 N N OH HN OH N N COOMe N O OH HN O O H N O O O O H N O H 59 60 N N COOMe OH HN H HN N N OH OH N O O O H N O O O N N O H O H 61 CO2Me 62 OH N N N N CN H OH HN N O O H O N O O O O O O H O H 63 64 N N COOMe OH HN N O O O O H 65 66 N N CN HN N N CN OH HN H H N O O O O N O O O O N N O H O H NZ_claims_20150813_PLH 67 68 N N CN N N CN OH HN HN H HO H N O O O N O O O O O N N O H O H HN N N CN N O O O O H VII. Oxazole, 4 oxazoyl s with variations in tyrosine moiety 70 71 COOMe COOMe OH HN N N HN N N H H N O O O O N O O O O N N Cl O H F O H 72 O 73 N N OH HN OMe N N H OH HN OMe N O H O O N O O O O O N N O H O H 74 75 N N OMe OH HN N N OH HN OH O H N O O N O O O O O O H N O H VIII. Oxazole, 4 oxazoyl analogs with variations in indoline moiety 206447NZ_claims_20150813_PLH 76 77 Me Me N N OH HN OH N O O O SO2Me 78 79 Me Me N N COOMe HN N N COOMe OH HN H OH N O H O O N O O O O O N N O O H 80 Me Me 81 Me Me OMe OH OH N OH HN N N HN H H O N O N O O O O F F O O N N O H O H 82 Me Me 83 Me Me N N N N OH HN OMe OH HN OH H H N O N O O O O O O O F F N N O O H H 84 85 N HN N N OH HN N OMe OH OH H H N O O O N O O O Cl F O O N N O H O H NZ_claims_20150813_PLH 86 87 IX. Oxazole, 4 oxazoyl s with N-Methyl group in side chain and/or macrocyclic moiety 88 89 COOMe OH HN N N Me HN N N OH OH N O Me O O N O O O O H N O H 90 91 COOMe HN N N CN OH HN N N OH Me O N O N O O O N N O H O H 92 93 COOMe OH MeN N N N N COOMe H OH MeN N O Me O O N O O O O O N N O H O H X. Oxazole, 4-aryl (non-oxazole) analogs 206447NZ_claims_20150813_PLH 95 Me Me 96 N N HN N OH HN N OH H H N O O N O O O O O N N O H O H 97 Me Me 98 Me Me N COOMe CH2OH OH HN N OH HN N N O H N S N O O O S O O O H N O H XI. Oxazole, 4 oxazoyl analogs 99 Me Me 100 HN N N COOMe N N CF3 OH OH HN H H N O O N O O O O O O H 101 102 Me Me N N N OH OH HN N HN OH H H N O O N O O O O O O O N OH H ive 103 104 N N COOMe OH HN H HN N N OMe N O OH O O H N O O O 105 H OH HN N OMe N O O O 206447NZ_claims_20150813_PLH
- 2. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt thereof: I. Oxazole, 4 oxazoyl analogs with esters other than methyl ester in position 4. 21 Me Me 22 Me Me O O N N OH HN O OH HN N N O H H N O O O O N O O O O O N H O H 23 Me Me 24 Me Me H2 O O N N C HN N N HN O H OH O OMe H H N O N O O O O O N O H O H 25 Me Me 26 O O N N P N N OH HN O ONa HN O OMe H OH OH N O H O O N O O O O O N N O H O H
- 3. A compound of claim 1 and of the following table, or a pharmaceutically able salt thereof: II. Oxazole, 4 oxazoyl analogs with alcohol or ketone in on 4 206447NZ_claims_20150813_PLH 27 Me Me 28 Me Me N N OH HN N N OH OH HN OH H H N O N O O O O O O O N N O O H H 29 OH 30 O N N N N OH HN OH HN H H N O O N O O O O O O NH NH 31 OH N N OH HN N O O
- 4. A compound of claim 1 and of the following table, or a pharmaceutically able salt thereof: 32 Me Me 33 Me Me N CH2NH2 HN N N CH2NHMe OH HN N H H N O O N O O O O O O N N O H O H 34 Me Me 35 Me Me N N SO2Me HN N N OH HN N OH N OMe H H H H N O O N O O O O O O N N O H O H 206447NZ_claims_20150813_PLH 36 37 Me Me N O OH HN N N N O O O O H
- 5. A compound of claim 1 and of the following table, or a pharmaceutically able salt thereof: IV. Oxazole, 4 l analogs with cyano-group in position 4 38 Me Me 39 Me Me N N CN CN OH HN OH HN N N N O H O N O O O O NHAc O O N N O H O H N N CN OH HN N O O O Me O H
- 6. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt thereof: V. Oxazole, 4 oxazoyl analogs with heterocycles in position 4 41 Me Me Me Me O 42 O N N OH HN N N O OH HN O H H N O N O O O O O O O N N O H O H 206447NZ_claims_20150813_PLH 43 Me Me N 44 N N HN N N O HN N OH N H H H N O N O O O O O O O N N O H O H 45 N 46 N N OH HN N H OH HN N N N N O H O O N O O O O O N N O H O H 47 N 48 N N OH HN O N O O O O H
- 7. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt VI. Oxazole, 4 oxazoyl analogs with substituents replacing isopropyl group 49 50 COOMe COOMe N N OH N N H OH HN N O O O N O O O NH O NH 51 52 COOMe COOMe N N N N OH HN OH HN H H N O O N O O O O O O O NH O NH 206447NZ_claims_20150813_PLH 53 COOMe 54 COOMe OH HN N N N OH O N N O H O N N O O O O O O H N O H 55 56 N COOMe OH HN N N HN N OH OH N O H O O N O O O O O N N O H O H 57 58 OH HN N N OH N N COOMe N O OH HN O O H N O O O O H N O H 59 60 N N COOMe OH HN H N N O OH HN OH N O O H N O O O N N O H O H 61 CO2Me 62 OH N N N N H OH HN N O O H O N O O O O O O H O H NZ_claims_20150813_PLH 63 64 N N COOMe OH HN N O O O O H 65 66 CN CN OH HN N N HN N N H H N O O O N O O O O O N N O H O H 67 68 CN CN OH HN N N HN N N H HO H N O O O O N O O O O N N O H O H N N CN N O O O O H
- 8. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt thereof: VII. Oxazole, 4 oxazoyl analogs with variations in ne moiety 70 71 N N COOMe N N COOMe OH HN OH HN H H N O O O O N O O O O N N Cl O H F O H 206447NZ_claims_20150813_PLH 72 O 73 N N OH HN OMe N N OH HN OMe N O H O O N O O O O O N N O H O H 74 75 OH HN N N OMe HN N N OH OH H H N O O O O N O O O O O H N O H
- 9. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt VIII. Oxazole, 4 oxazoyl analogs with variations in indoline moiety 76 77 Me Me HN N N OH OH N O O O SO2Me 78 79 Me Me N COOMe OH HN N N N COOMe H OH HN N O H O O N O O O O O N N O O H 206447NZ_claims_20150813_PLH 80 Me Me 81 Me Me N N OH HN N N OMe OH HN OH H H N O N O O O O O F F O O N N O H O H 82 Me Me 83 Me Me N N N N OH HN OMe OH HN OH H H N O O O O N O O O O F F N N O O H H 84 85 N N N N OH HN OMe OH HN OH H H N O O N O O O O Cl F O O N N O H O H 86 87
- 10. A nd of claim 1 and of the following table, or a pharmaceutically acceptable salt thereof: IX. Oxazole, 4 oxazoyl analogs with N-Methyl group in side chain and/or macrocyclic moiety 88 89 HN N N COOMe OH HN N N Me OH OH N O O O Me N O O O O H N O H 206447NZ_claims_20150813_PLH 90 91 N N CN COOMe HN N N OH HN OH Me Me O O N N O O O O O O N N O H O H 92 93 MeN N N COOMe COOMe OH MeN N N H OH N O O O N O O O O O N N O H O H
- 11. A compound of claim 1 and of the following table, or a ceutically acceptable salt thereof: X. Oxazole, 4-aryl (non-oxazole) analogs 95 Me Me 96 N N HN N OH HN N OH H H O N O N O O O O O N N O H O H 97 Me Me 98 Me Me N COOMe N N CH2OH OH HN N OH HN H H N O O S N O O S O O O H N O H 206447NZ_claims_20150813_PLH
- 12. A compound of claim 1 and of the following table, or a pharmaceutically acceptable salt thereof: XI. Oxazole, 4 l analogs 99 Me Me 100 N N COOMe N N CF3 OH HN OH HN H H N O O N O O O O O O H 101 102 Me Me N N HN N N OH HN OH H OH N O O N O O O O O O O N OH H Tentative 103 104 N N COOMe OH HN H N N O OH HN OMe N O O H N O O O 105 H N N OH HN OMe N O O O 206447NZ_claims_20150813_PLH
- 13. A compound of claim 1 and of the following table, or a pharmaceutically able salt thereof: Me Me HN N N OH OH N O O O 86; 81; O H OH HN N N OH N O O O 87; 85; O H COOMe HN N N CN N N OH OH HN H H N O O O N O O O O 62; O H 50; O NH N COOMe N N OH HN N OH HN OH H H N O O O O N O O O O N N 63; O H 57. O H 206447NZ_claims_20150813_PLH
- 14. A compound of claim 1 having the following formula, or a pharmaceutically acceptable salt thereof: HN N N OH OH N O O O 57. N O H
- 15. A nd of claim 1 having the following formula, or a pharmaceutically able salt thereof: Me Me HN N N OH OH N O O O 81. O H
- 16. A compound of claim 1 having the following formula, or a pharmaceutically acceptable salt thereof: OH HN N N OH N O O O 85. H
- 17. A compound of claim 1 having the following formula, or a pharmaceutically acceptable salt thereof: 206447NZ_claims_20150813_PLH
- 18. A compound of claim 1 having the following a, or a pharmaceutically acceptable salt thereof:
- 19. A pharmaceutical composition comprising the compound of claim 1 in unit dosage form with at least one pharmaceutically acceptable excipient and a second, different chemotherapeutic drug.
- 20. A pharmaceutical composition comprising the compound of claim 1 in unit dosage form with at least one pharmaceutically acceptable excipient and a second, different chemotherapeutic drug selected from antimetabolites, DNA active agents, intercalating agents, n synthesis inhibitors, topoisomerase type I inhibitors, topoisomerase type II inhibitors, microtubule inhibitors, kinase inhibitors, drugs that affect Hsp90, TRAIL, a TRAIL or dy, TNF-α or TNF-β.
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161478059P | 2011-04-22 | 2011-04-22 | |
| US61/478,059 | 2011-04-22 | ||
| PCT/US2012/033715 WO2012145255A2 (en) | 2011-04-22 | 2012-04-15 | Diazonamide analogs |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| NZ616926A NZ616926A (en) | 2015-09-25 |
| NZ616926B2 true NZ616926B2 (en) | 2016-01-06 |
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