Build: upgrade to irmin.3.7

This MR aims to bump various dependencies, see opam-repository!412 (merged), and to upgrade irmin to version 3.7.

This is just a library version bump, the new features proposed by irmin.3.7 (layered store for archive nodes) is not implemented yet, see !8399 (closed) for the layered store implementation. Only a minor API change is addressed in this MR.

Irmin.3.7 aims to improve the overall performances (by ~2% and drastically reduces the blocking time by a factor of ~7) of irmin without introducing any incompatibility nor disk format changes. However, it comes with a small ram usage regression of ~3%.

Performance improvements

Detailed stats

stats.txt

Manually testing the MR

• Green CI
• Successful mainnet bootstrap (ongoing) https://machine1.nomadic-labs.com/d/ffov8jbVz/octez-full-dashboard?orgId=1&from=1682581273000&to=now

Checklist

• Document the interface of any function added or modified (see the coding guidelines)
• Document any change to the user interface, including configuration parameters (see node configuration)
• Provide automatic testing (see the testing guide).
• For new features and bug fixes, add an item in the appropriate changelog (docs/protocols/alpha.rst for the protocol and the environment, CHANGES.rst at the root of the repository for everything else).
• Select suitable reviewers using the Reviewers field below.
• Select as Assignee the next person who should take action on that MR