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SCORU/Node: move configuration outside of protocol dir

Alain Mebsoutrequested to merge
alain@functori@single-rollup-node-1 into master

Context

This MR moves the configuration module and structure outside of the protocol specific directories. It is one of the first steps for the protocol agnostic rollup node (#2901 (closed)).

Depends on !8562 (merged).

Manually testing the MR

This refactoring should be transparent from the outside (CI).

Edited by Alain Mebsout

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