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localrepo: Refactor and improvements to tree functions

John Cairequested to merge
jc/tree-improvements into master

This MR is a slew of improvements to tree functions in the localrepo package. Namely, it adds an Entries member to the TreeEntry struct so it creates a new data structure that we can operate on in memory before we write the changes to the tree into Git.

This is broken out from !5567 (merged)

Edited by John Cai

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