Commits · v.2.beta.3 · E.L.Cortegano / metapop2 · GitLab

Sep 22, 2018
- Release version 2.beta.3 · e32634e4
  E.L.Cortegano authored Sep 22, 2018
  
  View commits for tag v.2.beta.3 v.2.beta.3
  
  e32634e4
- Merge branch 'release-v2.beta.3' into develop that updates version numbers · 977d0a1b
  E.L.Cortegano authored Sep 22, 2018
  
  977d0a1b
- Change version numbers to v.2.beta.3 · 63b45763
  E.L.Cortegano authored Sep 22, 2018
  
  63b45763
- Merge branch 'issue-59' into develop that fix #59 that fix #59 · befe15a7
  E.L.Cortegano authored Sep 22, 2018
  
  befe15a7
- Updated CI/CD pipeline · 819a86f6
  E.L.Cortegano authored Sep 22, 2018
  
  819a86f6
- Clean information printed when using bootstrap methods · 2293b149
  E.L.Cortegano authored Sep 22, 2018
  
  2293b149
- Checking if populations are mixed for management · 4204d506
  E.L.Cortegano authored Sep 22, 2018
  
  4204d506
- Return error if management has individuals with unknown gender · 1938cf4f
  E.L.Cortegano authored Sep 22, 2018
  
  1938cf4f
- Improved examples in README file · 559ffefe
  E.L.Cortegano authored Sep 22, 2018
  
  559ffefe
- Individuals are automatically reorder by gender · 23a16ee8
  E.L.Cortegano authored Sep 22, 2018
  
  23a16ee8
- Improved control error over management file · aa6fe371
  E.L.Cortegano authored Sep 22, 2018
  
  aa6fe371
- Improved error report when input file format is wrong · b68dce82
  E.L.Cortegano authored Sep 22, 2018
  
  b68dce82
- Prevent users from using individual labels and not ID in the forbidden and restriction matrix · 29119abc
  E.L.Cortegano authored Sep 22, 2018
  
  29119abc
- Management file can contain other additional matrix (coancestry,forbidden,restrictions) · ba6d69ff
  E.L.Cortegano authored Sep 22, 2018
  
  ba6d69ff
- Improved checks on the declaration of individuals for next generation for management · 569d5a0a
  E.L.Cortegano authored Sep 22, 2018
  
  569d5a0a
- Default values of replicates and generations are always declared · 94997c80
  E.L.Cortegano authored Sep 22, 2018
  
  94997c80
- Prevent users from enabling input for next generation without calling a management method · dfa8893f
  E.L.Cortegano authored Sep 22, 2018
  
  dfa8893f
- Genepop format cannot be used for management · 743b1ba2
  E.L.Cortegano authored Sep 22, 2018
  
  743b1ba2
- Removed verbose mode · 37fd6ebd
  E.L.Cortegano authored Sep 22, 2018
  
  37fd6ebd
- Update options documentation · 6130a413
  E.L.Cortegano authored Sep 22, 2018
  
  6130a413
- Added example management file · 80970c94
  E.L.Cortegano authored Sep 22, 2018
  
  80970c94
Sep 21, 2018
- Added options and functions to read a management file · cb60bc42
  E.L.Cortegano authored Sep 22, 2018
  
  cb60bc42
- Small changes in the CI/CD pipeline · b70a7b33
  E.L.Cortegano authored Sep 21, 2018
  
  b70a7b33
- Prevent users from specifying more than one input format · 84998193
  E.L.Cortegano authored Sep 21, 2018
  
  84998193
- plink PED file is the default input format · 78676318
  E.L.Cortegano authored Sep 21, 2018
  
  78676318
- Changed options to specify input datafile format · 5ac2e426
  E.L.Cortegano authored Sep 21, 2018
  
  5ac2e426
- Prevent users to run simulation without metapop input format · bf383fda
  E.L.Cortegano authored Sep 21, 2018
  
  bf383fda
Sep 20, 2018
- Uniformized variable type for alleles · b09be9fa
  E.L.Cortegano authored Sep 20, 2018
  
  b09be9fa
Sep 17, 2018
- Fixed typos in README file · 787cec2b
  E.L.Cortegano authored Sep 18, 2018
  
  787cec2b
- Management method can be used with haploid data · 834dc260
  E.L.Cortegano authored Sep 18, 2018
  
  834dc260
Sep 16, 2018
- Fixed typos in README file · a781c82f
  E.L.Cortegano authored Sep 17, 2018
  
  a781c82f
- Merge branch 'issue-58' into develop that fix #58 · f533d709
  E.L.Cortegano authored Sep 17, 2018
  
  f533d709
- Fixed use of boostrap confidence intervals with haploid data · 3d0a5df7
  E.L.Cortegano authored Sep 16, 2018
  
  3d0a5df7
- Fixed calculation of gene frequencies for haploid genomes · 7fd1ef38
  E.L.Cortegano authored Sep 16, 2018
  
  7fd1ef38
- Improved conversion of unknown gender type from Metapop to PED files · 40d19a74
  E.L.Cortegano authored Sep 16, 2018
  
  40d19a74
- Fixed error when converting PED haploid files into metapop format · 75217b68
  E.L.Cortegano authored Sep 16, 2018
  
  75217b68
- Fixed conversion of format types with haploid data · 12c81f7a
  E.L.Cortegano authored Sep 16, 2018
  
  12c81f7a
- In the simplified metapop format, gender is declared with the individual label · 09fc1af9
  E.L.Cortegano authored Sep 16, 2018
  
  09fc1af9
- When using haploid genomes, alleles are read one to one · cc52de27
  E.L.Cortegano authored Sep 16, 2018
  
  cc52de27
- Prevents users from mixing haploid data with genepop format · b180821f
  E.L.Cortegano authored Sep 16, 2018
  
  b180821f