Commits · v2.2.0 · ezlab / Lemmi V2

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Jan 10, 2024
- debug wrong field name · 6939ab6f
  matsepp authored Jan 10, 2024
  
  View commits for tag v2.2.0 v2.2.0
  
  6939ab6f
- always use species_ncbi_taxid as taxid · 0f42f843
  matsepp authored Jan 10, 2024
  
  0f42f843
- fix the sampling method for the best ref with gtdb · 4ff012e3
  matsepp authored Jan 10, 2024
  
  4ff012e3
Dec 30, 2023
- Update LICENSE · b07696b8
  Mathieu authored Dec 30, 2023
  
  b07696b8
- Update README.md · e8f78774
  Mathieu authored Dec 30, 2023
  
  e8f78774
- Update LICENSE · bc5c31e0
  Mathieu authored Dec 30, 2023
  
  bc5c31e0
Dec 28, 2023
- source for tools that do not run conta and host · d1c94748
  Mathieu authored Dec 28, 2023
  
  d1c94748
Dec 20, 2023
- debug · b294237f
  Mathieu authored Dec 20, 2023
  
  b294237f
- debug · fb139bf8
  Mathieu authored Dec 20, 2023
  
  fb139bf8
- debug · 322f2068
  Mathieu authored Dec 20, 2023
  
  322f2068
- now can disable contaminant and host · 284ee60e
  Mathieu authored Dec 20, 2023
  
  284ee60e
- metabuli 102 [skip ci] · d5ce541c
  Mathieu authored Dec 20, 2023
  
  d5ce541c
Dec 10, 2023
- debugged source for centrifuge-r [skip ci] · 3578e7ac
  Mathieu authored Dec 10, 2023
  
  3578e7ac
Dec 06, 2023
- stop the run if the value for the date is unclear · aa0bfca7
  Mathieu authored Dec 06, 2023
  
  aa0bfca7
- add ganon_160 [skip ci] · fccc1013
  Mathieu authored Dec 06, 2023
  
  fccc1013
- fuse all pairwise ranks in a single json · 53745b7b
  Mathieu authored Dec 06, 2023
  
  53745b7b
- source of all tools [skip ci] · de22b4f9
  Mathieu authored Dec 06, 2023
  
  de22b4f9
Dec 05, 2023
- all source of containers to uploa [skip ci] · 60ae3acf
  Mathieu authored Dec 05, 2023
  
  60ae3acf
Dec 04, 2023
- centrifuger [ci skip] · 160ebf49
  Mathieu authored Dec 04, 2023
  
  160ebf49
- source of kraken · e945e2d1
  Mathieu authored Dec 04, 2023
  
  e945e2d1
Nov 29, 2023
- restore a change that caused a bug · ac77454f
  Mathieu authored Nov 29, 2023
  
  ac77454f
Nov 28, 2023
- deal with pandas warning · 8f44818d
  Mathieu authored Nov 28, 2023
  
  8f44818d
Nov 25, 2023
- Merge branch 'main' of gitlab.com:ezlab/lemmi-v2 · a6d8ca8c
  Mathieu authored Nov 25, 2023
  
  a6d8ca8c
- ancient dna, deamin step only · 2d3817d5
  Mathieu authored Nov 25, 2023
  
  2d3817d5
Nov 20, 2023
- Update kraken_212.demo.yaml · 2b2b6986
  Mathieu authored Nov 20, 2023
  
  2b2b6986
Nov 19, 2023
- add the ancient keyword, remain unused for now · f2304ed5
  Mathieu authored Nov 19, 2023
  
  f2304ed5
Nov 16, 2023
- Merge branch '2.2.0' into 'main' · 163ce62f
  Mathieu authored Nov 16, 2023
  163ce62f
- Update instance.definition.smk · 0145eccc
  Mathieu authored Nov 16, 2023
  
  0145eccc
Nov 06, 2023
- debug the filtering process based on the date · 4767adb2
  Mathieu authored Nov 06, 2023
  
  4767adb2
Oct 31, 2023
- Update README.md · 0a40fe27
  Mathieu authored Oct 31, 2023
  
  0a40fe27
- Update README.md · 0f8e4da1
  Mathieu authored Oct 31, 2023
  
  0f8e4da1
- Update README.md · c54af0fd
  Mathieu authored Oct 31, 2023
  
  c54af0fd
- Update README.md · 23e18c84
  Mathieu authored Oct 31, 2023
  
  23e18c84
- Update README.md · bf3d2514
  Mathieu authored Oct 31, 2023
  
  bf3d2514
- Update config.yaml.default · c2e300fe
  Mathieu authored Oct 31, 2023
  
  c2e300fe
- add iptable support · 5fff2db5
  Mathieu authored Oct 31, 2023
  
  5fff2db5
- Merge branch '2.2.0' into 'main' · e8848a26
  Mathieu authored Oct 31, 2023
  e8848a26
- Update config.yaml.default · b3ad0625
  Mathieu authored Oct 31, 2023
  
  b3ad0625
- add other_params in the config · 087dedd9
  matsepp authored Oct 31, 2023
  
  087dedd9
Oct 27, 2023
- change the way l2 is computed · c08a0aa0
  matsepp authored Oct 27, 2023
  
  c08a0aa0