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/*==========================================================================
SeqAn - The Library for Sequence Analysis
http://www.seqan.de
============================================================================
Copyright (C) 2007
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
============================================================================
$Id: find.h 2619 2008-08-30 20:00:10Z doering@PCPOOL.MI.FU-BERLIN.DE $
==========================================================================*/
#ifndef SEQAN_HEADER_FIND_H
#define SEQAN_HEADER_FIND_H
//____________________________________________________________________________
// prerequisites
#include <cmath>
#include <deque>
#include <seqan/sequence.h>
#include <seqan/modifier.h>
#include <seqan/score.h>
#include <seqan/graph_types.h>
#include <seqan/graph_algorithms.h>
#include <seqan/map.h>
//____________________________________________________________________________
#ifdef SEQAN_SWITCH_USE_FORWARDS
#include <seqan/find/find_generated_forwards.h>
#endif
#include <seqan/find/find_base.h>
#include <seqan/find/find_pattern_base.h>
//____________________________________________________________________________
// exact pattern matching
#include <seqan/find/find_simple.h>
#include <seqan/find/find_horspool.h>
#include <seqan/find/find_shiftand.h>
#include <seqan/find/find_shiftor.h>
#include <seqan/find/find_bndm.h>
#include <seqan/find/find_bom.h>
//____________________________________________________________________________
//complex pattern matching
#include <seqan/find/find_wild_shiftand.h>
//____________________________________________________________________________
//multiple pattern search
#include <seqan/find/find_ahocorasick.h>
#include <seqan/find/find_multiple_shiftand.h>
#include <seqan/find/find_set_horspool.h>
//#include <seqan/find/find_multi.h> //wegwerfen
#include <seqan/find/find_wumanber.h>
#include <seqan/find/find_multiple_bfam.h>
//____________________________________________________________________________
// approximate pattern matching
#include <seqan/find/find_begin.h>
#include <seqan/find/find_score.h>
#include <seqan/find/find_myers_ukkonen.h>
#include <seqan/find/find_abndm.h>
#include <seqan/find/find_pex.h>
//#include <seqan/find/find_hamming_horspool.h>
//____________________________________________________________________________
//filtering
#include <seqan/find/find_quasar.h>
//____________________________________________________________________________
#endif //#ifndef SEQAN_HEADER_...
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