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/*==========================================================================
SeqAn - The Library for Sequence Analysis
http://www.seqan.de
============================================================================
Copyright (C) 2007
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
============================================================================
$Id: chaining.h 3038 2008-11-12 21:07:25Z doering@PCPOOL.MI.FU-BERLIN.DE $
==========================================================================*/
#ifndef SEQAN_HEADER_CHAINING_H
#define SEQAN_HEADER_CHAINING_H
#include <seqan/basic.h>
#include <seqan/score.h>
#include <seqan/sequence.h>
#include <seqan/seeds.h>
#include <seqan/misc/misc_random.h>
#ifdef SEQAN_SWITCH_USE_FORWARDS
#include <seqan/chaining/chaining_generated_forwards.h>
#endif
#include <seqan/chaining/score_chain.h>
#include <seqan/chaining/score_manhattan.h>
#include <seqan/chaining/score_zero.h>
#include <seqan/chaining/score_chain_sop.h>
#include <algorithm>
#include <vector>
#include <seqan/chaining/range_max_tree.h>
#include <seqan/chaining/chain_base.h>
#include <seqan/chaining/fragment.h>
#include <seqan/chaining/chain_point.h>
#include <seqan/chaining/chain_wrapper_point.h>
#include <seqan/chaining/chain_meta_fragment.h>
#include <seqan/chaining/tree_chain_utils.h>
#include <seqan/chaining/tree_chain.h>
#include <seqan/chaining/tree_chain_sop.h>
#include <seqan/chaining/chain_generic.h>
namespace seqan{
}
#endif
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