1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
|
/*==========================================================================
SeqAn - The Library for Sequence Analysis
http://www.seqan.de
============================================================================
Copyright (C) 2007
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
============================================================================
$Id: blast.h 4714 2009-08-24 13:38:02Z weese@PCPOOL.MI.FU-BERLIN.DE $
==========================================================================*/
#ifndef SEQAN_HEADER_BLAST_H
#define SEQAN_HEADER_BLAST_H
//____________________________________________________________________________
// prerequisites
#include <iostream>
#include <fstream>
#include <seqan/align.h>
#include <seqan/graph_types.h>
#include <seqan/misc/misc_parsing.h>
#include <seqan/graph_algorithms.h>
#ifdef SEQAN_SWITCH_USE_FORWARDS
#include <seqan/blast/blast_generated_forwards.h>
#endif
#include <seqan/blast/blast_base.h>
#include <seqan/blast/blast_hsp.h>
#include <seqan/blast/blast_hit.h>
#include <seqan/blast/blast_report.h>
#include <seqan/blast/blast_parsing.h>
#include <seqan/blast/blast_iterator.h>
#include <seqan/blast/blast_hit_iterator.h>
#include <seqan/blast/blast_hsp_iterator.h>
#include <seqan/blast/blast_stream_report.h>
#include <seqan/blast/blast_stream_hit.h>
#include <seqan/blast/blast_stream_hit_iterator.h>
#include <seqan/blast/blast_stream_hsp_iterator.h>
#include <seqan/blast/blast_run.h>
#endif //#ifndef SEQAN_HEADER_...
|