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/*==========================================================================
SeqAn - The Library for Sequence Analysis
http://www.seqan.de
============================================================================
Copyright (C) 2007
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 3 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
============================================================================
$Id: align.h 2619 2008-08-30 20:00:10Z doering@PCPOOL.MI.FU-BERLIN.DE $
==========================================================================*/
#ifndef SEQAN_HEADER_ALIGN_H
#define SEQAN_HEADER_ALIGN_H
//____________________________________________________________________________
// prerequisites
#include <cmath>
#include <stack>
#include <seqan/sequence.h>
#include <seqan/score.h>
#include <seqan/map.h>
#include <seqan/graph_align.h>
#include <seqan/modifier.h>
//____________________________________________________________________________
#ifdef SEQAN_SWITCH_USE_FORWARDS
#include <seqan/align/align_generated_forwards.h>
#endif
#include <seqan/align/gaps_base.h>
#include <seqan/align/gaps_iterator_base.h>
#include <seqan/align/gaps_array.h>
#include <seqan/align/gaps_sumlist.h>
#include <seqan/align/gaps_simple.h>
#include <seqan/align/align_base.h>
#include <seqan/align/align_cols_base.h>
#include <seqan/align/align_iterator_base.h>
#include <seqan/align/matrix_base.h>
#include <seqan/misc/priority_type_base.h>
#include <seqan/misc/priority_type_heap.h>
#include <seqan/align/align_algorithms.h>
#include <seqan/align/align_dynprog.h>
#include <seqan/align/align_local_dynprog.h>
#include <seqan/align/hirschberg_set.h>
#include <seqan/align/align_myers.h>
#include <seqan/align/align_hirschberg.h>
#endif //#ifndef SEQAN_HEADER_...
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