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SEQAN_BASE = ..
# Link against runtime library on Linux systems
OS_NAME=$(shell uname)
ifeq ($(OS_NAME),Linux)
LDFLAGS += -lrt
endif
tbb_root?=../extra/tbb
#check, if tbb_root is not absolute path (the filter keeps only /* paths)
ifeq ($(filter /% $(SLASH)%, $(subst :, ,$(tbb_root)) ),)
# also changes related variables like work_dir
override tbb_root := $(CWD)$(SLASH)..
export TBB21_INSTALL_DIR := $(tbb_root)
endif
# explicitly compile for a 32 or 64 bit platform
#CXXFLAGS += -m32
#CXXFLAGS += -m64
CXXFLAGS += -I$(SEQAN_BASE)
CXXFLAGS += -O9
#CXXFLAGS += -O0 -g
CXXFLAGS += -pedantic -W -Wall
CXXFLAGS += -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 ${CXXEXTRAFLAGS}
# Intel Threading Building Blocks
#CXXFLAGS += -I$(SEQAN_BASE)/extra/tbb/include/
#LDFLAGS += -L$(SEQAN_BASE)/extra/tbb/build/macos_em64t_gcc_cc4.0.1_os10.5.5_debug/ -ltbb_debug -lpthread
TARGETS = dfi/dfi seqan_tcoffee/seqan_tcoffee seqcons/seqcons razers/paramChooser razers/razers pair_align/pair_align micro_razers/micro_razers tree_recon/tree_recon
all: check_seqan_base $(TARGETS)
dfi: check_seqan_base dfi/dfi
razers: check_seqan_base razers/razers razers/paramChooser
micro_razers: check_seqan_base micro_razers/micro_razers
seqan_tcoffee: check_seqan_base seqan_tcoffee/seqan_tcoffee
seqcons: check_seqan_base seqcons/seqcons
pair_align: check_seqan_base pair_align/pair_align
tree_recon: check_seqan_base tree_recon/tree_recon
check_seqan_base:
@if [ ! -d "$(SEQAN_BASE)/seqan" ]; then \
echo "The directory $(SEQAN_BASE)/seqan could not be found!"; \
exit 1; \
fi
clean:
rm -f $(TARGETS) $(TARGETS:=.o)
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