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cmake_minimum_required(VERSION 3.2)
project(racon)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -pedantic")
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
option(racon_build_tests "Build racon unit tests" OFF)
option(racon_build_wrapper "Build racon wrapper" OFF)
add_executable(racon
src/main.cpp
src/polisher.cpp
src/overlap.cpp
src/sequence.cpp
src/window.cpp)
target_link_libraries(racon spoa thread_pool pthread edlib z)
install(TARGETS racon DESTINATION bin)
if (racon_build_tests)
set(racon_test_data_path ${PROJECT_SOURCE_DIR}/test/data/)
configure_file("${PROJECT_SOURCE_DIR}/test/racon_test_config.h.in"
"${PROJECT_BINARY_DIR}/config/racon_test_config.h")
include_directories(${PROJECT_BINARY_DIR}/config)
include_directories(${PROJECT_SOURCE_DIR}/src)
add_executable(racon_test
test/racon_test.cpp
src/polisher.cpp
src/overlap.cpp
src/sequence.cpp
src/window.cpp)
target_link_libraries(racon_test spoa thread_pool pthread
edlib gtest_main gtest z)
endif(racon_build_tests)
if (racon_build_wrapper)
set(racon_path ${PROJECT_BINARY_DIR}/bin/racon)
set(rampler_path ${PROJECT_BINARY_DIR}/vendor/rampler/bin/rampler)
configure_file(${PROJECT_SOURCE_DIR}/scripts/racon_wrapper.py
${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper)
file(COPY ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper
DESTINATION ${PROJECT_BINARY_DIR}/bin
FILE_PERMISSIONS OWNER_READ OWNER_EXECUTE GROUP_READ GROUP_EXECUTE
WORLD_READ WORLD_EXECUTE)
add_subdirectory(vendor/rampler)
endif(racon_build_wrapper)
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