File: Rsamtools.mk

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r-bioc-rsamtools 1.16.1-2

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sloc: ansic: 15,758; cpp: 435; sh: 40; makefile: 7

file content (8 lines) | stat: -rw-r--r-- 386 bytes

SAMTOOLS_PATH=\
    `echo 'cat(system.file("usrlib", .Platform[["r_arch"]],\
                         package="Rsamtools", mustWork=TRUE))' |\
                 "${R_HOME}/bin/R" --vanilla --slave`
PKG_LIBS+="$(SAMTOOLS_PATH)/libbam.a" "$(SAMTOOLS_PATH)/libbcf.a"\
	"$(SAMTOOLS_PATH)/libtabix.a" -lz -pthread
PKG_CPPFLAGS+=-D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 \
	-D_LARGEFILE64_SOURCE