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CXX?= g++
CXXFLAGS+= -Wall -O3
LINKFLAGS = -lpthread -lz
DEBUG=
OBJECTS = ErrorCorrection.o GetKmers.o
# For Windows pthreads library: http://www.sourceware.org/pthreads-win32/
ifneq (,$(findstring MINGW,$(shell uname)))
LINKFLAGS = -L. -lpthreadGC2
endif
all: lighter
lighter: main.o $(OBJECTS)
$(CXX) -o $@ $(CXXFLAGS) $(OBJECTS) main.o $(LINKFLAGS) $(LDFLAGS)
main.o: main.cpp utils.h Reads.h Store.h File.h KmerCode.h bloom_filter.hpp
ErrorCorrection.o: ErrorCorrection.cpp ErrorCorrection.h utils.h
GetKmers.o: GetKmers.cpp GetKmers.h utils.h
clean:
rm -f *.o *.gch lighter
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