1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
#ifndef _MOURI_ERROR_CORRECTION
#define _MOURI_ERROR_CORRECTION
#include <stdio.h>
#include "Store.h"
#include "KmerCode.h"
#include "Reads.h"
struct _ErrorCorrectionThreadArg
{
int kmerLength ;
Store *trustedKmers ;
struct _Read *readBatch ;
int batchSize ;
int batchUsed ;
int batchFinished ;
char badQuality ;
pthread_mutex_t *lock ;
} ;
void *ErrorCorrection_Thread( void *arg ) ;
//@ return:0: this read is correct. -1-this read is unfixable. Otherwise, return the number
// of corrected positions.
int ErrorCorrection_Wrapper( char *read, char *qual, KmerCode& kmerCode, char badQuality, Store *kmers, int &badPrefix, int &badSuffix, int &info ) ;
#endif
|