[go: up one dir, main page]

File: utils.h

package info (click to toggle)
lighter 1.1.2-7
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 5,052 kB
  • sloc: cpp: 4,103; sh: 35; makefile: 19
file content (23 lines) | stat: -rw-r--r-- 529 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
#ifndef _MOURISL_CORRECTOR_UTIL_HEADER
#define _MOURISL_CORRECTOR_UTIL_HEADER

#include <stdint.h>


#define MAX_READ_LENGTH 1024
#define MAX_ID_LENGTH 512

// By changing this definition, the user can use longer kmer length.
// Using longer kmer does NOT mean better accuracy!!
#define MAX_KMER_LENGTH 32

#define READ_BUFFER_PER_THREAD 1024
/*char nucToNum[26] = { 0, -1, 1, -1, -1, -1, 2, 
	-1, -1, -1, -1, -1, -1, -1,
	-1, -1, -1, -1, -1, 3,
	-1, -1, -1, -1, -1, -1 } ;

char numToNuc[26] = {'A', 'C', 'G', 'T'} ;*/


#endif