1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23
|
#ifndef _MOURISL_CORRECTOR_UTIL_HEADER
#define _MOURISL_CORRECTOR_UTIL_HEADER
#include <stdint.h>
#define MAX_READ_LENGTH 1024
#define MAX_ID_LENGTH 512
// By changing this definition, the user can use longer kmer length.
// Using longer kmer does NOT mean better accuracy!!
#define MAX_KMER_LENGTH 32
#define READ_BUFFER_PER_THREAD 1024
/*char nucToNum[26] = { 0, -1, 1, -1, -1, -1, 2,
-1, -1, -1, -1, -1, -1, -1,
-1, -1, -1, -1, -1, 3,
-1, -1, -1, -1, -1, -1 } ;
char numToNuc[26] = {'A', 'C', 'G', 'T'} ;*/
#endif
|