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#!/bin/sh -f
./src/andi --help > /dev/null || exit 1
SEED=${RANDOM_SEED:-0}
SEED2=0
SEED3=0
if test $SEED -ne 0; then
SEED=$((SEED + 1))
SEED2=$((SEED + 2))
SEED3=$((SEED + 3))
fi
# Simple join test
./test/test_fasta -s $SEED -l 1000 -L 1000 -d 0.1 > p1_join.fasta
./test/test_fasta -s $SEED2 -l 1000 -L 1000 -d 0.1 > p2_join.fasta
./test/test_fasta -s $SEED3 -l 10000 -L 10000 -d 0.1 > p3_join.fasta
head -qn 2 p1_join.fasta p2_join.fasta p3_join.fasta > S0_join.fasta
tail -qn 2 p1_join.fasta p2_join.fasta p3_join.fasta > S1_join.fasta
rm p1_join.fasta p2_join.fasta p3_join.fasta;
RES=$(./src/andi -m RAW -t 1 -j S0_join.fasta S1_join.fasta |
tail -n 1 |
awk '{print ($2 - 0.1)}' |
awk 'function abs(x){return ((x < 0.0) ? -x : x)} {print abs($1-$2) < 0.03}'
)
if test $RES -ne 1; then
echo "The last test computed a distance deviating more than three percent from its intended value."
echo "See S0_join.fasta and S1_join.fasta for the used sequences."
exit 1;
fi
SEED=${RANDOM_SEED:-0}
SEED2=0
if test $SEED -ne 0; then
SEED=$((SEED + 5))
SEED2=$((SEED + 6))
fi
#unbalanced number of contigs
./test/test_fasta -s $SEED -l 1000 -L 1000 -d 0.1 > p2_join.fasta
./test/test_fasta -s $SEED2 -l 10000 -L 10000 -d 0.1 > p3_join.fasta
head -qn 2 p3_join.fasta > S0_join.fasta
tail -qn 2 p2_join.fasta p3_join.fasta > S1_join.fasta
rm p2_join.fasta p3_join.fasta;
RES=$(./src/andi -m RAW -t1 -j S0_join.fasta S1_join.fasta |
tail -n 1 |
awk '{print ($2 - 0.1)}' |
awk 'function abs(x){return ((x < 0.0) ? -x : x)} {print abs($1-$2) < 0.03}'
)
if test $RES -ne 1; then
echo "The last test computed a distance deviating more than three percent from its intended value."
echo "See S0_join.fasta and S1_join.fasta for the used sequences."
exit 1;
fi
SEED=${RANDOM_SEED:-0}
SEED2=0
SEED3=0
if test $SEED -ne 0; then
SEED=$((SEED + 11))
SEED2=$((SEED + 12))
SEED3=$((SEED + 13))
fi
#unbalanced number of contigs 2
./test/test_fasta -s $SEED -l 1000 -L 1000 -d 0.1 > p1_join.fasta
./test/test_fasta -s $SEED2 -l 1000 -L 1000 -d 0.1 > p2_join.fasta
./test/test_fasta -s $SEED3 -l 10000 -L 10000 -d 0.1 > p3_join.fasta
head -qn 2 p1_join.fasta p3_join.fasta > S0_join.fasta
tail -qn 2 p1_join.fasta p2_join.fasta p3_join.fasta > S1_join.fasta
rm p1_join.fasta p2_join.fasta p3_join.fasta;
RES=$(./src/andi -mRAW -t 1 -j S0_join.fasta S1_join.fasta |
tail -n 1 |
awk '{print ($2 - 0.1)}' |
awk 'function abs(x){return ((x < 0.0) ? -x : x)} {print abs($1-$2) < 0.03}'
)
if test $RES -ne 1; then
echo "The last test computed a distance deviating more than three percent from its intended value."
echo "See S0_join.fasta and S1_join.fasta for the used sequences."
exit 1;
fi
rm S0_join.fasta S1_join.fasta
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