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#compdef andi
# This file allows zsh to complete arguments for andi. As the syntax is
# totally non-obvious, I'll explain the basics here. For details see
# http://zsh.sourceforge.net/Doc/Release/Completion-System.html
# Each line consists of three parts: (A){B}[C]
# The B part performs brace expansion as on the commandline. Thus each
# line with braces gets translated into multiple arguments! Also the
# B part lists the relevant argument for which we are trying to set
# the completion rules. The A part simply states that B shall not be
# completed if A is already present. i.e. Most flags only make sense once,
# with the exception of -v. The string C is simply the message that is
# displayed to the user.
local info="-h --help --version"
local ret=1
local -a args
args+=(
"($info -b --bootstrap)"{-b+,--bootstrap=}'[Print additional bootstrap matrices]:int:'
"($info)*--file-of-filenames=[Read additional filenames from file; one per line]:file:_files"
"($info -j --join)"{-j,--join}'[Treat all sequences from one file as a single genome]'
"($info -l --low-memory)"{-l,--low-memory}'[Use less memory at the cost of speed]'
"($info -m --model)"{-m+,--model=}'[Pick an evolutionary model]:model:((
Raw\:Uncorrected\ distances
JC\:Jukes\-Cantor\ corrected
Kimura\:Kimura\-two\-parameter
LogDet\:Logarithmic\ determinant
))'
"($info)-p+[Significance of an anchor; default\: 0.025]:float:"
"($info)--progress=[Show progress bar]:when:(always auto never)"
"($info -t --threads)"{-t+,--threads=}'[The number of threads to be used; by default, all available processors are used]:num_threads:'
"($info)--truncate-names[Print only the first ten characters of each name]"
"($info)*"{-v,--verbose}'[Prints additional information]'
'(- *)'{-h,--help}'[Display help and exit]'
'(- *)--version[Output version information and acknowledgments]'
'*:file:_files'
)
_arguments -w -s -S $args[@] && ret=0
return ret
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