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#include <glib.h>
#include "global.h"
#include <stdio.h>
#include <string.h>
#include "sequence.h"
double ANCHOR_P_VALUE = 0.025;
int FLAGS = F_NONE;
void test_seq_basic(){
seq_t S;
seq_init( &S, "ACGT", "name");
g_assert_cmpstr(S.S, ==, "ACGT");
g_assert_cmpstr(S.name, ==, "name");
g_assert_cmpuint(S.len, ==, 4);
seq_free( &S);
}
void test_seq_full(){
seq_t S;
seq_subject subject;
seq_init( &S, "ACGTTGCA", "name");
int check = seq_subject_init( &subject, &S);
g_assert_cmpint(check, ==, 0);
g_assert_cmpstr(subject.RS, ==, "TGCAACGT#ACGTTGCA");
g_assert_cmpuint(subject.RSlen, ==, 8*2+1);
g_assert( subject.gc == 0.5);
seq_subject_free( &subject);
seq_free( &S);
}
void test_seq_nonacgt(){
seq_t S;
seq_subject subject;
seq_init( &S, "11ACGTNN7682394689NNTGCA11", "name");
seq_subject_init( &subject, &S);
g_assert_cmpstr(S.S, ==, "ACGTTGCA");
g_assert_cmpuint(S.len, ==, 8 );
g_assert( FLAGS & F_NON_ACGT);
g_assert_cmpstr(subject.RS, ==, "TGCAACGT#ACGTTGCA");
g_assert_cmpuint(subject.RSlen, ==, 8*2+1);
g_assert( subject.gc == 0.5);
seq_subject_free( &subject);
seq_free( &S);
FLAGS = F_NONE;
seq_init( &S, "@ACGT_!0TGCA ", "name");
seq_subject_init( &subject, &S);
g_assert_cmpstr(S.S, ==, "ACGT!TGCA");
g_assert_cmpuint(S.len, ==, 9 );
g_assert( FLAGS & F_NON_ACGT);
g_assert_cmpstr(subject.RS, ==, "TGCA;ACGT#ACGT!TGCA");
g_assert_cmpuint(subject.RSlen, ==, 9*2+1);
seq_subject_free( &subject);
seq_free( &S);
FLAGS = F_NONE;
}
int main(int argc, char *argv[])
{
g_test_init( &argc, &argv, NULL);
g_test_add_func("/seq/basic", test_seq_basic);
g_test_add_func("/seq/full", test_seq_full);
g_test_add_func("/seq/non acgt", test_seq_nonacgt);
return g_test_run();
}
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