Activity for Wout De Nolf
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Wout De Nolf committed [956fe4] on Code
fix pyproject.toml
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adapt CI to pyproject.toml
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CI: install source package
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remove setuptools version bounds
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remove bare exceptions
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requirements before pip install
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unused import
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iterating the HDF5 root can cause segfaults
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hdf5 segfault utilities
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Undefined variables in SNIPModule methods
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[fastfit] add peak profiles to diagnostics
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[rgb] allow image shape to be set when no no image is loaded
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[rgb] add `image_shape` argument to `RGBCorrelatorWidget`
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[rgb] open RGB correlator window even when no images are specified
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[batchfit] recursive mkdir
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[nexusutils] auxiliary signals bug
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[nxutils] preserve timezone
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[nexus] fix small bug in markDefault
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[roibatch] create legacy with tests
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[roibatch] add more cli options
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[mcastackview] fix bug
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[roibatch] add outputbuffer to script and gui
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[outputbuffer] create base class for the generic part
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[mcastackview] move to core for general use
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[roibatch] use McaStackView
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[batchfit] EDFviewer as independent process + bug in single process edf file detection
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[nexus] typo in NXdetector
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[roibatch] small change
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[roibatch] forgot to reshape min/max images
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[h5py] always specify file mode
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Handle broken NXentry links
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[nexus] add utils for writing
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[fastfit] refactor fastfit for multiple output format
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[fastfit] implement h5 output
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[fastfit] adapt gui to new output API
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[fastfit] bug in NXprocess overwriting
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[nexus] modify nxdata saving
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[fastfit] add residuals and model to H5 output
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[nexus] modify tests
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[nexus] signal and axes as dict
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Allow working on source or develop install.
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[fastfit] add data and axes to Nexus output, fit background bug (subtract on copy).
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[fastfit] concentrations bug
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[fastfit] refactor for readability
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[fastfit] split parameters and uncertainties
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[nexus] py3 bug
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[dev] add bootstrap
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[fastfit] refactor memory usage and MCA stack slicing
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[fastfit] move MCA stack view and output buffer to separate files. Temporary fix unit test by conversion to float32.
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[fastfit] small modifications to HDF5 output and add more GUI options
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[fastfit] allow iteration over MCA with any dimension
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[fastfit] address PR comments
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[Nexus] extended ASCII byte strings will be saved as bytes
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[fastfit] nxprocess default name fast_xrf_fit
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[Nexus] unused unicode in tests
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[fastfit] concentrations were not shown when GUI fitting
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[gui] disable "diagnostics" when H5 output unchecked
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[bootstrap] allow running bootstrap from source directory
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[gui] disable HDF5 options in Fast Fitting Widget when h5py is not installed
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[Nexus] do not use data from fixed-length decoding attempt
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[fastfit] add tests for 2D and 4D MCA stacks
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[Nexus] handle string conversion differently
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[Nexus] asNxChar option to allow extended ASCII
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[Nexus] add more unicode test cases
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[fastfit] allow >3D stacks for MaskedView
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[ci] enable Qt tests
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[ci] use pyside2 on travis
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Rename to share OutputBuffer between fast and normal batch fitting.
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[batchfit] add output buffer (not used yet) and corresponding script options
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[batchfit] parameters, uncertainties and concentrations saved through OutputBuffer
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[batchfit] add units to HDF5 output
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[batchfit] refactor spaghetti code (not done)
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[batchfit] refactored
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[batchfit] save diagnostics
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[batchfit] bootstrap subprocess
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[batchfit] allow output names to be tuples
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[batchfit] add spec ASCII output
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[batchfit] encoding error HTML output
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[batchfit] refactor merge part (H5 merging tbd)
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[batchfit] outputroot from input list
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[batchfit] disable old output routines
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[batchfit] refactor merging (not done)
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[batchfit] merge partial results using nan's instead of summation
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[batchfit] add single-image edf option to OutputBuffer and refactor saveContext
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[batchfit] same extension options in GUI as for fast fitting
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[batchfit] merge .h5 results
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[batchfit] bug on windows
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[batchfit] bug in h5 merging
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Merge branch 'master' of github.com:vasole/pymca into batchfit-hdf5
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[batchfit] legacy classes instead of flag
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[batchfit] remove units from hdf5 output
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[batchfit] add multi-page edf/tif option to GUI
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[batchfit] re-introduce nosave batch fitting (not done)
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[batchfit] save concentrations.txt by default
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[batchfit] more label format tests for OutputBuffer
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[batchfit] deterministic multi-page order, allocate buffers on first 'valid' file
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[batchfit] allow csv in multi processing
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[batchfit] bug
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Merge branch 'batchfit-hdf5' of github.com:woutdenolf/pymca into batchfit-hdf5
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[batchfit] PyMcaBatch cli arguments for GUI
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