softwares for phylogenetic trees - Browse Files at SourceForge.net

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Name	Modified	InfoDownloads / Week
TreeFam-Perl-API	2009-02-13	0
treebest	2007-10-19	1
njtree-devel	2007-04-22	0
atvEditor	2007-04-20	0
OldFiles	2007-04-17	2
Totals: 5 Items		3

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PhyloPattern
PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
kSNP
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as...
PhyRe: PHYlogenetic REpresentativeness
Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
Newick Utils
Shell tools for Newick-fromatted trees
FFP-Feature Frequency Profile Phylogeny
FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

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