MSP-HTPrimer

A high-throughput primer design tool for DNA methylation analysis

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Last Update: 2016-09-13

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MSP-HTPrimer is an open source, web-based high-throughput and genome-wide primer design pipeline for bisulfite-based assays (MSP, BSP and COBRA) and MSRE-PCR assay and capable of simultaneously processing hundreds to thousands of target sequences. MSP-HTPrimer takes genome-wide annotations of SNPs and repeats into consideration to design primer pairs for higher success rate. MSP-HTPrimer enables hierarchical filtering and visualisation of designed primers in UCSC genome browser for efficient selection of assays.

Features

BSP
MSP
DNA methylation
BSP-COBRA
MSRE

Project Samples

MSP-HTPrimer BS conversion

MSP-HTPrimer benchmark

MSP-HTPrimer workflow

MSP-HTPrimer query page

MSP-HTPrimer result page for MSP

MSP-HTPrimer result page for PyroSeq primers

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2015-10-26

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