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BED files uesd to annotate CpG according to its genomic positions. Only support human genome (hg19 and hg38). hg19_ENCODE_338TF_130Cell_E3.bed.gz hg19_ENCODE_DNaseI_125Cells_V3.bed.gz hg19_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz hg19_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz hg19_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz hg19_ENCODE_chromHMM_states_9Cells.merge.bed.gz hg19_FANTOM_enhancers_phase_1_and_2.bed.gz hg38_ENCODE_338TF_130Cell_E3.bed.gz hg38_ENCODE_DNaseI_125Cells_V3.bed.gz hg38_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz hg38_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz hg38_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz hg38_ENCODE_chromHMM_states_9Cells.merge.bed.gz hg38_FANTOM_enhancers_phase_1_and_2.bed.gz TSV file used to annotate CpG according to its ID: MethylationEPIC_CpGtools.tsv.gz MD5sum to check file integrity: MD5 (MethylationEPIC_CpGtools.tsv.gz) = b908d5d450fa6693427d17b16affaf68 MD5 (hg19_ENCODE_338TF_130Cell_E3.bed.gz) = 55578f8c01e8a26649d5b78d6904c4dc MD5 (hg19_ENCODE_DNaseI_125Cells_V3.bed.gz) = 18e79a2162050361efb1c9af5dcf7d80 MD5 (hg19_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz) = 33b57d950426dc91719ff9cf59bc9e8b MD5 (hg19_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz) = 48efb002f2a29c911b362edfb6da8ff1 MD5 (hg19_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz) = 160067f95e9e699665304e1154d82f5f MD5 (hg19_ENCODE_chromHMM_states_9Cells.merge.bed.gz) = f2b5b7d45ff63c6aa4c48ed61f2e80a5 MD5 (hg19_FANTOM_enhancers_phase_1_and_2.bed.gz) = 8f08b810b8de0a5cd8026fed74d67eed MD5 (hg38_ENCODE_338TF_130Cell_E3.bed.gz) = f31d3e338458c109e688aaaa324cf4dc MD5 (hg38_ENCODE_DNaseI_125Cells_V3.bed.gz) = 5e048e09044755944f6e14916abf2568 MD5 (hg38_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz) = 011e0de535fd0972ab00c3d25dbf1aa0 MD5 (hg38_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz) = 65985c3afa1214a88c33dd1d5ccfd9bc MD5 (hg38_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz) = 075221cb22b271dcd07de46a11f03feb MD5 (hg38_ENCODE_chromHMM_states_9Cells.merge.bed.gz) = eadb3538954c4c5678de2785a026306d MD5 (hg38_FANTOM_enhancers_phase_1_and_2.bed.gz) = 8e0d48e1f0fec987581ea51bb28dd5c1