M scripts/psl2CGFF.pl
M scripts/cgff2PSL.pl
M scripts/samGetSEQfast.pl
M scripts/SSDAcompare_chisqr.pl
M scripts/RPKMcorrelation.pl
M scripts/SSDAcompare_Splice1.pl
M scripts/psl2sam.pl
M scripts/consistentBlocks.pl
M scripts/model2GFF3.pl
M scripts/SSDAcompare_chisqr_Splice1.pl
M scripts/MappingBowtieBlat2.pl
M scripts/cgff2GFF3.pl
M scripts/MappingBowtie.pl
M scripts/mergeSpliceCount.pl
M scripts/SSGEcompare.pl
M scripts/MappingBowtieBlat.pl
M scripts/SamReverse.pl
M scripts/Interval2igv.pl
M scripts/RPKMnormalization.pl
M scripts/CGFFjoin.pl
M scripts/MD2XM.pl
M scripts/samGetSEQ.pl
M scripts/consistentSAM.pl
M scripts/MappingBlat.pl
M scripts/VariantAnnotateWrapper.pl
M scripts/SNPapply.pl
M scripts/blast2psl.pl
M scripts/mergeCoverage.pl
M scripts/MastAnnotationAS.pl
M scripts/Mapping_auto.pl
M scripts/PTCdetection.pl
M scripts/MastPairCompare.pl
M scripts/SamMultiplier.pl
M scripts/MutationAnnotation.pl
M scripts/sam2fas.pl
M scripts/translate.pl
M scripts/SamPointize.pl
M scripts/mergeExonCount.pl
M scripts/qMonitor.pl
M scripts/MastCompare.pl
M scripts/SNPsummary.pl
M scripts/SamBootstrap.pl
M scripts/preindex.pl
M scripts/SplitDO.pl
M scripts/reheaderSAM.pl
M scripts/RNAseq_auto.pl
M scripts/SNPMappingScan.pl
M scripts/MergeSam2.pl
M scripts/sam_filter.pl
M scripts/geneCoverageTransform.pl
M scripts/intronExonAvgDepth.pl
M scripts/mergeGeneRPKM.pl
M scripts/SeqSelector.pl
M scripts/SNPannotation.pl
M scripts/SplitSelector.pl
M scripts/MergeSam.pl
M scripts/SSDAcompare.pl
M scripts/consistentIterator.pl
M scripts/fixFasta.pl