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#17 Support GO via GOtcha

open
Benjamin Landsteiner
New Programs (5)
7
2005-06-08
2004-06-28
Mike Olson
No

Evaluate, and if appropriate, implement the GOtcha
method to search for an appropriate Gene Ontology for
any unknown sequence.

Result name: *.GOT...?

See http://bio10846/local/MycoRefs/Gotcha.html for
details on this interesting program.

and www.geneontology.com for info on Gene Ontology.

R

Discussion

  • Benjamin Landsteiner

    Benjamin Landsteiner - 2004-07-15

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    www.geneontology.org

    Currently in the process of contacting GOtcha developers.

     

  • Mike Olson

    Mike Olson - 2005-06-02
    • priority: 5 --> 7
     

  • Benjamin Landsteiner

    Benjamin Landsteiner - 2005-06-08

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    user_id=1058673

    In the fall of 2004, the GOtcha developers released a public version of their
    software. I am currently in the process of investigating GOtcha, and will
    implement it into CCT if feasible.

    One issue of the top of my head is that it requires (to be useful) many
    third-party perl libraries (and binaries!). This makes making a Mac OS X
    easy installer a bit more difficult.

     

  • Benjamin Landsteiner

    Benjamin Landsteiner - 2005-06-08
    • labels: --> New Programs
    • assigned_to: nobody --> landstei
     

  • Nobody/Anonymous

    Nobody/Anonymous - 2005-07-25

    Logged In: NO

    OK, so here's the lowdown: GOtcha's databases aren't dynamic, which is
    one of the premises for creating CCT -- should we still consider
    implementing this?

     

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