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#4 Possible bug - dels called as dups?

1.0
open
nobody
None
2025-09-29
2025-09-29
Pauline Ng
No

I ran Mitosalt on a sample with a deletion, and it was mistakenly called as a dup.

In delplot.R, should lines 269-275 change from:
OLD:
if(dloop == 'yes'){
Ds<-res$del.start.median[i]
De<-res$del.end.median[i]
Dsr<-res$del.start.range[i]
Der<-res$del.end.range[i]

        }

NEW:
if(dloop == 'yes'){
# BUG / Pauline fxed on Sep 29, 2025, need to switch coordinates, like OriH below
Ds<-res$del.end.median[i]
De<-res$del.start.median[i]
Dsr<-res$del.end.range[i]
Der<-res$del.start.range[i]

        }

Otherwise, the dloop if statement has no effect because Ds, De, Dsr, Der were assigned in the previous lines.

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