David Fange committed [r756]

Fixed bug where machine epsilon difference lead to situations where no event was selected in eventDiffusion() although the eventDiffusion function had been selected to run. Inadvertently, this lead the eventDiffusion function to return NULL, which is interpreted as a reaction event happened. This lead to core dumps in the later molecule tracking code since it was trying to execute a reaction without any reactants being specified.

David Fange committed [r755]

Fixed major bug in how the diffusion propensitites are calculated. Affected subvolumes on the edge of the geomtry.

David Fange committed [r754]

Minor buildscript modifications

David Fange committed [r753]

Added missing file

David Fange committed [r752]

Added functionality to the CMake script to comp...

David Fange committed [r751]

Ensuring that the ubuntu package pass the quali...

David Fange committed [r750]

Molecule trackng updates to manual

David Fange committed [r749]

Bugfix

David Fange committed [r748]

Bug in molecule tracking log

David Fange committed [r747]

Re-organized the CMakeList.txt

David Fange committed [r745]

Fixed case-sensitivitiness problems.

David Fange committed [r744]

Adding missing file.

David Fange committed [r743]

More work on the cmake build script. Primarly r...

David Fange committed [r746]

Tweaking the build scripts on win32

David Fange committed [r742]

Making sure that libSBML is required in the cma...

David Fange committed [r741]

More work on the documentation

David Fange committed [r740]

Fixed equidistant checkpoints for molecule trac...

David Fange committed [r739]

Added support for starting from old checkpoints...

David Fange committed [r738]

Aha, this was the spelling error that was fixed!

David Fange committed [r737]

Fixed spelling error

David Fange committed [r736]

First attempt to make MesoRD build on windows a...

David Fange committed [r733]

Fixed bugs in the output.

David Fange committed [r735]

A bit to efficient in getting a warning-less co...

David Fange committed [r734]

Added back time in trajectory time-pointing.

David Fange committed [r732]

Cmake fix

David Fange committed [r731]

Warning-less compile on Ubuntu

David Fange committed [r730]

Fixed linking problems on ubuntu

David Fange committed [r729]

Made sure that the unittests were up to date wi...

David Fange committed [r728]

Bugfix

David Fange committed [r727]

Name-change for sbml defintion of tracked molec...

David Fange committed [r726]

David Fange committed [r725]

Some work on getting the unittests online toget...

David Fange committed [r724]

More work on the manual for the new release.

David Fange committed [r723]

trying to make the scale dependent reaction rat...

David Fange committed [r722]

Work on the manual to reflect the addition of t...

David Fange committed [r721]

Worked on code-documentation and some clean-up.

David Fange committed [r717]

Fixed spelling error

David Fange committed [r716]

Further tweaks of the buildscripts for user doc...

David Fange committed [r718]

Bug fixes in build-scripts

David Fange committed [r720]

Big fix in build script

David Fange committed [r719]

buildscript bug-fixing

David Fange committed [r715]

Continued work on the user documentation toolch...

David Fange committed [r714]

First effort in getting the toolchain for build...

David Fange committed [r713]

Worked on the buildscripts on linux

David Fange committed [r712]

Addition of molecule-tracking for reaction in n...

David Fange committed [r711]

Adding forgotten files

David Fange committed [r710]

completed the cmake build script such that it w...

David Fange committed [r709]

Primarily work on microscopic homodimerization ...

David Fange committed [r708]

Tagging of the code used for MesoRD release 1.1...