MesoRD Code

Adding forgotten files

completed the cmake build script such that it works on unix like platforms. Made minor modifications to the code

Primarily work on microscopic homodimerization (which hopefully leads to a new release)

Tagging of the code used for MesoRD release 1.1 (from branch 1.0.1)

The molecule tracking module now provides a log file with the following information:

- length of a voxel (-q option)
- timestep between position outputs in trajectory.txt files (-w option)
- list of pairs of speciesnames and diffusion constants, in the same length & time units as used for the voxels and timesteps

More changes for allowing compilation on Unix systems via CMake.

Change of several files, especially the CMakeLists.txt files to allow compilation on Unix systems via CMake.

Creation of the molecule tracking version of tutorials.xml, called tutorial_molecule_tracking.xml

Tested MesoRD on tutorial_molecule_tracking.xml and everything seemed to work.

Modified the XML files to have MesoRD:species instead of MesoRD:species_diffusion in the species field.

Added more flags HAVE_MOLECULE_TRACKING where there was molecule tracking specific code.