Jmol Code

bonds do not use java.awt.Color

labels no longer use java.awt.Color

eliminated java.awt.Color from selection halo

Dealing with viewer.getDisplayModelIndex() returning -1

next step in eliminating java.awt.Color

Minor step in eliminating use of java.awt.Color object

Fah

Fah

Fah

draw support for animation:

(1) absolute [x,y,z] coordinates are "fixed" in space
in all frames.

(2) (atom sets) are calculated freshly for EACH frame
unless the FIXED keyword is present. In that case,
what is displayed is an average value for all frames.

(3) [objectID] references are fixed or free to move, as
defined in the initial "draw objectID" specification.

(4) fixed coordinates and free (atom sets) can be mixed.

Examples:

load cyclohexane_movie.xyz
draw axis1 250 (atomno=2) (atomno=5)
#between two atoms

draw axis2 200 (atomno=4 or atomno=3) (atomno=1 or atomno=6)
#between two bonds

draw axis2 200 FIXED (atomno=4 or atomno=3) (atomno=1 or atomno=6)
#average position shown throughout animation

draw axis2 200 [0.,0.,0.] (atomno=4 or atomno=3) (atomno=1 or atomno=6)
# one fixed point and two moving points forming a triangle.

animation on



see http://www.stolaf.edu/people/hansonr/jmol/test/json/pmesh.htm