Activity for Iris
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heinmatt committed [r1895] on Calliope
rd: added fixed limits of color showing the magnitude of arrows
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rd: added custom color limits
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Roman Doronin committed [r635] on Auxiliary Code
Takahiro settings
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rd: is needed for WF_imageROIvelocityField to color arrows proportionally to their magnitude
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rd: now the color of the arrows is proportional to their length
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ES: bug fix of not moving ROis in eeg template Fixed issue
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rd: small bug with indexing stacks
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rd: added deleting ROIs if they existed before
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LL - Fixed a bug in wfAddRois.m
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rd: .mat files for plotting values in grid ROIs (whole cortex and cranial window)
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rd: added code making .mat file for plotting grid ROIs (both whole cortex and cranial window)
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Allen structures necessary for creating ROI templates and plotting templates
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rd: removed path to tungsten for the Allen structures, now points to C:/Code
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rd: added possibility to also plot cranial window data (inferred by the number of values provided)
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excluded folders from showing on the list
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rd: fixed the bug with assigning 'FAILED' status to the first ExpID instead of the failed one,
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ES: increased circle sizes in Only_EEG_Electrodes_grid_template.mat
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ES: increased circles for EEG_electrode_positions_based_on_lambda-bregma.mat
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ES: increased circle size for ROItemplate_generate_only_eeg_electrode_positions_lambda_bregma.m
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LL - Adata 1.4.2 - Improved the documentation of add_variable()
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Eduard Stroukov committed [r1874] on Calliope
adding a "verbose" optional argument to plotBSTRP.m to monitor function progress - HL
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LL - Adata.m 1.4.1 bugfix in Adata.create()
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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rd: added possibility for Adata.create to create a new folder for the mouse if it doesn't exist
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LL Adata.m (1.4.0) Adata.create() allows creation of new folders.
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rd: fixed the bug of not providing .mat extension as the path to Adata, and the bug where matlab was trying to create structure array when it saw cell array as the field value - wrapped cell arrays into {}
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Updating a comment field in register_multilayer.m - HL
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Fixed for the case of no lab notes found (when the paths search gives no result), with initializing an empty variable that was otherwise not initialized if no page is found.
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Georg committed [r1865] on Calliope
mark point feature added to view_stack - GK
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LL - Better error message in Adata.m
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bugfixes to meta documentation - GK
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updated the way set_lab_paths works (you define which path you want as input argument - no argument returns adata_path) - could have unexpected consequences - GK
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minor bufix GK
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added lab note extract to proj_meta in generate_proj_meta.m - GK
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bugfix for tpi delete pipeline - GK
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2 major updates:
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schitris: median act was computed twice, instead of only once.
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rd: updated arguments passed to list_file_types as the arguments structure of list_file_types changed
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bugfix to accomodate 2c WF data - GK
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LL - solved a bug in the creation of the adata file in register_wid.m
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updated adata saving to use adata class - GK
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MAJOR:
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LL - Adata.m now checks if raw data has been deleted before saving for all recording types (including 2P)
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LL - Adata.m now can create new files (1.3.0)
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added PLS setting
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Added 4 matplotlib colormaps, related GNU license, and a divergent colormap function - HL
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HM - renamed the function from 'powerInRange.m' to 'AvgPsdInRange.m' for clarity. updated to accept matrices or N-D arrays as signal as well. added usb_dB_averaging linear conversion.
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HM - added arguments to control PSD average across animals, to average over time, and to adjust color lim. Set the minimum frame length across animals for each timepoint.
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LL - solved small bug in plotBSTRP.m in the baseline subtraction
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LL - plotBSTRP now performs bootstrapping by complete traces instead of by individual timepoints
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LL - added nbstrp.m as the new standard function and included a deprecation warning in nbstrp_clean.m
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LL - Updated nbstrp.m to have the same functionality of the previously tested nbstrp_clean.m
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LL- Updated plotBSTRP.m to return optionally the bootstrapped data and accept x_values as arguments
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HL: testing an update for register_widefield to handle _ch525.wid single channel wf recording
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threshold was too low
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Hugo Ladret committed [r629] on Auxiliary Code
added kanataka to the auxmain UserConfig.ini
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ES: added another argument to control y position of scale bar
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ES: changed last three arguments in plotERP.m to optional ones
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LL - Solved a bug in WF_corrmat.m
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ES: plotERP does not automatically create figure object anymore
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updated the file selection instruction to not load the .bin file.
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fixed parsing of the NaN paradigm fields in the old data (when paradigm field was not introduced yet) based on comment fields.
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updating plotBSTRP to default to mean +- sd, instead of mean +- prctile - HL
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fixed sec bug
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Leonardo Lupori committed [r623] on Auxiliary Code
Updating GK_RIG01_WID1.ini
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UserConfig.ini: fixing a conflict between EEG and ECT AuxMain vars
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added ANT project DD
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cleanup commmit
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bugfix for wfSaveRois.m
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ES: added channel exclusion to EEG_check_spectrum.m