guisdap Code

64 lines (54 with data), 1.9 kB

#! /bin/bash -e
### Madrigal upload script
### Translated from csh  Carl-Fredrik Enell 20190917

## Tasks
# (1) Prepare analyzed data (guisdap result files) for loading to madrigal.
# (2) Transfer the prepared files to the central "madrigalstage" directory.


### Syntax: mad RESULT_DIRECTORY
if [ $# != 1 ]; then
   echo "Usage: $0 RESULT_DIRECTORY";
   exit 1;
fi   

### Create stage directory
echo "Reading input from $1"
TMPDIR=$(mktemp -d)
GDIR=$(basename $1)
MDIR="${TMPDIR}/${GDIR}-stage"
mkdir ${MDIR}
echo "Copying $1 to ${MDIR}"
cp -rp $1 ${MDIR}

### Format for Madrigal: results and tarball of mat files
echo "Formatting ${MDIR} for Madrigal"
pushd ${MDIR} >& /dev/null
# Move result files up one level
[ ! -f ${GDIR}/*.eps ] || mv -f ${GDIR}/*.eps .
[ ! -f ${GDIR}/*.png ] || mv -f ${GDIR}/*.png .
[ ! -f ${GDIR}/*.pdf ] || mv -f ${GDIR}/*.pdf .
[ ! -f ${GDIR}/NCAR_*.asc ] || mv -f ${GDIR}/NCAR_*.asc .
[ ! -f ${GDIR}/NCAR_*.bin ] || mv -f ${GDIR}/NCAR_*.bin .
[ ! -f ${GDIR}/NCAR_*.hdf5 ] || mv -f ${GDIR}/NCAR_*.hdf5 .
[ ! -f ${GDIR}/*.txt ] || mv -f ${GDIR}/*.txt .

# create tarball of $MDIR/$GDIR: now contains only .mat and gfd_setup.m files
tar cf ${GDIR}.tar ${GDIR}
rm -rf ${GDIR}
# Replace @ signs in names
##for F in *\@*; do mv ${F} ${F/\@/_}; done
# Compress any big files
BIGFILES=(eps asc tar)
for FTYP in ${BIGFILES[@]}; do
 if [ -f *.${FTYP} ]; then gzip -9 *.${FTYP} ; fi
done

### Done formatting
echo "${MDIR} now contains: "
ls -l
popd >& /dev/null

### Copy to HQ stage area and clean up
echo "Transferring ${MDIR} to HQ madrigalstage directory"
scp -rqp ${MDIR} kstdev@eiscathq.eiscat.se:~/madrigalstage/ 
echo "Deleting temporary directory ${MDIR}"
rm -rf ${MDIR}
echo "Moving $1 to madrigalstaged"
[ -d ${HOME}/madrigalstaged ] || mkdir ${HOME}/madrigalstaged
mv $1 ${HOME}/madrigalstaged
echo "Done!"

### EOF