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File Date Author Commit
 HMMEd 2013-05-31 ejb177 [r2304] fixed background distribution parsing, and writ...
 WWW 2014-01-07 ejb177 [r2333] added sampleing for hmm from hyperparameters, a...
 cmake 2008-04-02 grunau [r2215] add preliminary cmake support
 doc 2009-06-10 grunau [r2280] move states to distinct points
 ghmm 2015-09-26 ejb177 [r2341] removed commits that broke test
 ghmmwrapper 2015-09-26 ejb177 [r2341] removed commits that broke test
 tests 2013-08-01 ejb177 [r2325] Added support for sequence sets for gibbs. Fix...
 tools 2009-04-24 grunau [r2267] remove broken windows build system remains
 AUTHORS 2005-10-11 grunau [r1429] removed nasty PHI_DATA_FILE dependency
 CMakeLists.txt 2011-03-17 pavelmahmud [r2289] checking if i can commit with dummy modification
 COPYRIGHT.txt 2005-10-12 grunau [r1437] changed to LGPL and added Suns copyrights
 ChangeLog 2001-04-04 achim [r2] Initial revision
 GPL.txt 2001-04-20 achim [r23] added LGPL licences and framework in makefile
 LGPL.txt 2001-04-20 achim [r23] added LGPL licences and framework in makefile
 Makefile.am 2009-04-27 grunau [r2270] add xml examples to EXTRA_DIST
 NEWS 2001-04-04 achim [r2] Initial revision
 README 2007-11-16 grunau [r1977] move essential configuration from unistallable ...
 README.svn 2009-04-24 grunau [r2268] move README.cvs to README.svn and update
 ToDo 2006-05-03 schliep [r1633] test
 acinclude.m4 2009-04-20 grunau [r2254] quote AM_PATH_GSL to avoid aclocal warning
 autogen-mpi.sh 2006-09-07 grunau [r1696] restored autogen.sh and created autogen-mpi.sh
 autogen.sh 2013-08-05 ejb177 [r2327] fixed bug for macports
 config.h.cmake 2008-04-02 grunau [r2215] add preliminary cmake support
 configure.in 2013-07-29 ejb177 [r2322] update configure, version for release r3
 dist_hook.mak 2008-10-10 grunau [r2240] commit forgotten dist-hook macro
 version.m4 2013-07-29 ejb177 [r2322] update configure, version for release r3

Read Me

normal build instructions:
==========================

The generic build instructions can be found at INSTALL.

Some mathematic features are included from gsl, the GNU scientific library,
it is available at sources.redhat.com/gsl . All versions until gsl-0.7 are
supported now.

gsl and expat are distributed with Redhat 7.1 Linux.

so, configure is called with:

./configure --prefix=/as/you/like/it --with-gsl=/alternative/gsl/installation

build from svn:
===============

0. you need automake, autoconf and m4 from ftp://ftp.gnu.org

1. call autogen.sh
   (ignore messages like:
    automake: configure.in: installing `./mkinstalldirs'
        error while copying
   )

2. continue with normal build instructions as written in INSTALL

3. tests require DejaGNU (and this requires expect, a tcl based language)

Contents of this package:
=========================

ghmm
The hidden markov model library

doc
Documentation generated with doc++

tools
executables that provide usefull functions

tests
testsuite driven by DejaGNU, some tests are programming examples